LOC110508042 (LOC106613262)


Basic Information

Item Value
gene id LOC110508042
gene name LOC106613262
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 40840706 ~ 40847141 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021588488.2
AATACACTCCCTTATCCTCCACTGGGCCAGATCAGAGGAGGCTGCTGCCAGACCAAGAGACTGATAGAGACTGGTCGACTACCCAAGCTTGTCTTCACCTGACGAAGAACCACTGAGGCTGATCTGTGCTACATAAAACATCTGGGAGCAAAGTCCATTAACTTTCCCCCACCAGGCTGGATGTAAAGACTGGGAGAATTTCTGATCATAATCTTTACACTCTTTTTGACTCATCTGTATGTTTCATCATTACAACTGTGgtgtagtttttcatgttttaTTCAGTATTTAGAAATTACATTGGGACAggttttggtctggtctggtcaactgccttcctgtctgtgtgtccagAGGAGCTCCCCCATGTCCCCCTGGTTCACCTGGCTGACACCGGCCATTCCCCTGCTACTGCCCTGGCTGGTCAGGGATGGGTCAGGGATGGGTCAGGCAACTGTGTGTTCACGGTGGGATCGTTCGGTTGGTCTGGATGACCGTGGTCTCTTCCAGGAAGGTGAAGTCGTGATCGGTGGTCTCATCCCCTTCCATAACCTCCCTCCTGCTCCAGACCTGAGCTTCAGCCAACCCCCTGACCTGCAGGCCTGTGTCAATTTCCAAGAGGAACCATTGCAATGGGCACATGCGCTGGTGTTTGCGGTGGACGAGATTAACCGCAACCCCTTCCTGCTGCCGGGGGTTCAGCTGGGCTACCGTATCCTGGACAGCTGTAATCAGCACCCCTGGAGCCTGCGAGGGGCACTGTCCCTGTTGTCAGGGGGGAACATCAGATCACGGCCATCTAGTGACTGCCCTGTTCCTCTGGTCATTGGTGATGCATCGTCCACTCAGACCATCATCCTGTCCAGGACCCTGGGgcctctctctgtgcctgtgATCAGTTACCAGGCCAGCTGTGGCTGTCTCAGTGACAAACAGGAGTTCCCTAACTTCTTCAGGACTATCCCCAGTGATGTCTACCAGGCCCTCACCATGGCCCGGCTCACCTGGCTCTTGGGATGGACCTGGGTCGGGGCTATTGCTGTAGACAACGACTACGGTCGTCTGGCCATACAgGTGTTTGAGGAGGAGATTCGGGGGACGGGGGTGTGCCTGGCGTTCTTTGAGACCCTCAACCGGGCAAACCTGGTGAGGGATGTGAAGCGAGCAGCAGACACGGTCCAGGCCTCGACAGCGCGGGTGATCCTGGTCTTCCTCTGGTACACTGACATGGGGGCGTTACTACTGGAGCTGGGGAGGAGAAACGTGACGGACAGGCAGTTTCTGGCCAGTGAGGCATGGAGCACCAGCGGACAACTCCTACGAAACCCCGCCCTCTTTAACGTCGCTCAGGGCGTCGTGGGTGTGGCTATCCGCAGTGCACCTATTCCTGGCTTTGAGGCCCACCTTCGAAGTCTCAACCCCTCTCGTCGTCCCGGAGATGTCCTGTTGAAGGAACTCTGGGAAACGGTGTTTGGGTGTAGCCCTGGAGCAGCACATGGACACGGCACgtctctgctcccctctccccttcctccaacCCCCTCTGTGTCACtaccacacacccctcctcccacctccagTTCCCCTCATCCACGCCTGGCCTCCTGCAGTGGGGCAGAGACTCTGGAGGGGATACAGAGCCCCTTCACAGACACCTCCCAGCTGAGAATAACCTATAACGTGTACCTGGCTGTGTATTCTGCAGCCCACGCCCTCCACAGCCTGCTGTCCTGCCCCCAGAGAGACAGCCCTACCTGGGGCAGCAGCTTCACCTGCTCCCTTCCTTACAACATCAGCCCAGCGGAGCTGTTGCAGCACCTGAACCAGGTTAACTTCACCACTCCACTTGGGGAGCCGTTCTACTTCCGGGGCGCGGACGTCCCTGCTGTGTACGACCTTGTGAACTGGCAGGCCACGCCCCAGGGGTTGCTCAAACTTGTCACAATTGGCCGTGTAGACGGGTCTAATCTCCTCATCAACCAATCAGCCATCCAGTGGAACACAGGATCTAATATGGTGCCTGTGTCAGTGTGCAGTGACAGCTGTCCCCCAGGCACCCGTGTAGCCAGGAAGAAGGGGGAGCCTGTCTGCTGCTTCGACTGCATATCCTGTGCTGAGGGAGAGGTCAGCAACACAACAGGCTCTTTGCAATGTGACCGGTGTCCTCTGGAGTTCTGGTCCAACAGCCATCGGACCGCCTGCATCCCTCGTCAGCTCGAGTTCCTCTCCTTCAATGACGTGATGGGCGTCACCCTGACCACTGTTGCCGTGTGCGGCGCTGTGGCAACAGTGGCTGTGTTTATGTTCTTTGTGTACCACCGCCACACCCCTCTGGTGCGGGCCAACAACTCGGAGCTGAGCTTCCTGCTTCTCCTGTCACTCAAGCTCTGCTTCCTGTGTTCATTGGTGTTCATTGGCCGTCCCTCTGTGTGGGCGTGTCGGATCCGCCAGGCAGCATTTGGGGTCATCTTCGTGCTCTGCCTCTCCTGCCTCCTGGTCAAGACCATCGTGGTTCTGGCTGCGTTCCGCTCAGCCAGGCCCGGTGCAGGGCAGCTGATGAGGTGTTTTGGACCCGTTCAGCAGAGAGGGAGTGTCTTCCTCTTTACCAGTGTTCAGGTGATCATCTGTGCCGTGTGGCTGTCCACGAGCCCTCCCCTGCCTTACCGTGACCTAGGCCTCAAGGGGTCAAAGGTCATCCTGGAGTGTGAGGTTGGCTCTGTGGTCGGCTTCTCTCTGGTGCTGGGCTACATTGGCCTGctggcctccctctgtctcctcttagCCTTCCTGGCCAGGAAACTCCCAGACAACTTCAACGAGGCCAAGCTCATCACCTTCAGCATGCTGATCTTCTGTGCTGTGTGGATTTCATTTGTCCCTGCCTACATCAGCTCTCCTGGGAAGTACGCAGACGCTGTGGAGATATTCGCCATCTTAGCTTCCAGCTTTGGGTTACTGCTATGCATCTTCGCTCCGAAGTGTTACATCATCCTCCTGAGACCAGAGAGAAACACCAAGAAACACATGATGTCCAAATAGAAACCACCAAGAAAGACATGATGTCCAATTAGAAACCACCAAGAAAAACATGATGTCCAATTAGAAACCAGCAGGAAACACATGATGTCCAAATAGgaaccaccaagaaacacatgaTGTCCAATTAGAAACCAGCAGGAAACACATGTCCAATTAGAAACCACCAAGAAAGACATGATGTCAAATTagaaaccaccaagaaacacatgaTGTCCAATTAGAAACCACCAAGAAATACCTGATGTCCAATTagaaaccaccaagaaacacatgaTGTCCAAATATAGTCTTCAATGTGTTTAGTTAATCACACCATCTCACTGTTGTTTTGTATGGTAAAACCTTAACAAGGAATTACATGATACATTGTATAATACTTACCGGCAAGTTACATATTTACCAGTCAATACCTAAAGTTGATGGACACAAATGAACAGGACTTTTCTACCCTGCTGGGAGTGTATGTTTCTAATGATTCAAAAGTGAGTCAGCAGTGACTCATAGTTGAGTCAAGTGAATCAATAGTTAGTCAACAGTGAATCAACACTTAGTAAGTCTTCCTCTGAATCACAATATGACTCTTCTTTTCATTAGATTTTAATGACATCCATTTCTCCCCTGAATGTCAGTTCTGAAAACAAATCAGTTCAATTAGATATGGTTAATGAAAAATGTTGTTTTCTCCTTTCACATTTTATGAGGTGTGTAATTCTCTATTCCAATATGACACAGTTTCCTGAAATTTTAATAAAATATATCGCTAAATTTCAACTGTTCAATAAAAACACATTCAAGCAA
>TU2381753
ATCCTGGACAGCTGTAATCAGCACCCCTGGAGCCTGCGAGGGGCACTGTCCCTGTTGTCAGGGGGGAACATCAGATGTGAAACTACAGAGATTTCTAACCTCAAATGTGATTTtaaccactaacctcaacctcatCTTTACCTAAAATTAAAACGTAATGAAATGTATTTGCCAAATAGCCACTAATATTGTGGATATCCTACACTAAAT
>TU2381755
GCTCTTGGGATGGACCTGGGTCGGGGCTATTGCTGTAGACAACGACTACGGTCGTCTGGCCATACAgGTGTTTGAGGAGGAGATTCGGGGGACGGGGGTGTGCCTGGCGTTCTTTGAGACCCTCAACCGGGCAAACCTGGTGAGGGATGTGAAGCGAGCAGCAGACACGGTCCAGGCCTCGACAGCGCGGGTGATCCTGGTCTTCCTCTGGTACACTGACATGGGGGCGTTACTACTGGAGCTGGGGAGGAGAAACGTGACGGACAGGCAGTTTCTGGCCAGTGAGGCATGGAGCACCAGCGGACAACTCCTACGAAACCCCGCCCTCTTTAACGTCGCTCAGGGCGTCGTGGGTGTGGCTATCCGCAGTGCACCTATTCCTGGCTTTGAGGCCCACCTTCGAAGTCTCAACCCCTCTCGTCGTCCCGGAGATGTCCTGTTGAAGGAACTCTGGGAAACGGTGTTTGGGTGTAGCCCTGGAGCAGCACATGGACACGGCACgtctctgctcccctctccccttcctccaacCCCCTCTGTGTCACtaccacacacccctcctcccacctccagTTCCCCTCATCCACGCCTGGCCTCCTGCAGTGGGGCAGAGACTCTGGAGGGGATACAGAGCCCCTTCACAGACACCTCCCAGCTGAGAATAACCTATAACGTGTACCTGGCTGTGTATTCTGCAGCCCACGCCCTCCACAGCCTGCTGTCCTGCCCCCAGAGAGACAGCCCTACCTGGGGCAGCAGCTTCACCTGCTCCCTTCCTTACAACATCAGCCCAGCGGAGCTGTTGCAGCACCTGAACCAGGTTAACTTCACCACTCCACTTGGGGAGCCG
>TU2381759
TGGCAGGCCACGCCCCAGGGGTTGCTCAAACTTGTCACAATTGGCCGTGTAGACGGGTCTAATCTCCTCATCAACCAATCAGCCATCCAGTGGAACACAGGATCTAATATGGTGCCTGTGTCAGTGTGCAGTGACAGCTGTCCCCCAGGCACCCGTGTAGCCAGGAAGAAGGGGGAGCCTGTCTGCTGCTTCGACTGCATATCCTGTGCTGAGGGAGAGGTCAGCAACACAACAGGCTCTTTGCAATGTGACCGGTGTCCTCTGGAGTTCTGGTCCAACAGCCATCGGACCGCCTGCATCCCTCGTCAGCTCGAGTTCCTCTCCTTCAATGACGTGATGGGCGTCACCCTGACCACTGTTGCCGTGTGCGGCGCTGTGGCAACAGTGGCTGTGTTTATGTTCTTTGTGTACCACCGCCACACCCCTCTGGTGCGGGCCAACAACTCGGAGCTGAGCTTCCTGCTTCTCCTGTCACTCAAGCTCTGCTTCCTGTGTTCATTGGTGTTCATTGGCCGTCCCTCTGTGTGGGCGTGTCGGATCCGCCAGGCAGCATTTGGGGTCATCTTCGTGCTCTGCCTCTCCTGCCTCCTGGTCAAGACCATCGTGGTTCTGGCTGCGTTCCGCTCAGCCAGGCCCGGTGCAGGGCAGCTGATGAGGTGTTTTGGACCCGTTCAGCAGAGAGGGAGTGTCTTCCTCTTTACCAGTGTTCAGGTGATCATCTGTGCCGTGTGGCTGTCCACGAGCCCTCCCCTGCCTTACCGTGACCTAGGCCTCAAGGGGTCAAAGGTCATCCTGGAGTGTGAGGTTGGCTCTGTGGTCGGCTTCTCTCT
>TU2381758
AAAGTGTTGAATGGGATCAAATTGAGAATTCTTATATGGTACCATGTGTGTGTAACCCTTCCAGGTGCGGGCCAACAACTCGGAGCTGAGCTTCCTGCTTCTCCTGTCACTCAAGCTCTGCTTCCTGTGTTCATTGGTGTTCATTGGCCGTCCCTCTGTGTGGGCGTGTCGGATCCGCCAGGCAGCATTTGGGGTCATCTTCGTGCTCTGCCTCTCCTGCCTCCTGGTCAAGACCATCGTGGTTCTGGCTGCGTTCCGCTCAGCCAGGCCCGGTGCAGGGCAGCTGATGAGGTGTTTTGGACCCGTTCAGCAGAGAGGGAGTGTCTTCCTCTTTACCAGTGTTCAGGTGATCATCTGTGCCGTGTGGCTGTCCACGAGCCCTCCCCTGCCTTACCGTGACCTAGGCCTCAAGGGGTCAAAGGTCATCCTGGAGTGTGAGGTTGGCTCTGTGGTCGGCTTCTCTCT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021588488.2 False 3837 mRNA 0.52 10 40840706 40847141
TU2381753 False 210 lncRNA 0.41 1 40842242 40842451
TU2381755 False 850 TUCP 0.60 3 40843514 40844780
TU2381759 False 830 TUCP 0.58 5 40844829 40846039
TU2381758 True 465 lncRNA 0.56 2 40845472 40846039

Neighbor

gene id symbol gene type direction distance location
LOC110507225 LOC106581476 coding upstream 642 40692403 ~ 40840064 (+)
LOC110508037 LOC106581457 coding upstream 170627 40661246 ~ 40670079 (+)
LOC118944712 NA coding upstream 172074 40667017 ~ 40668632 (+)
ssr3 LOC106581450 coding upstream 543154 40294831 ~ 40297552 (+)
LOC110507223 LOC106613251 coding upstream 902627 39781189 ~ 39938079 (+)
LOC110507226 LOC106581479 coding downstream 9989 40857130 ~ 40878102 (+)
LOC118944684 LOC106613262 coding downstream 57373 40904514 ~ 40907313 (+)
LOC110508044 LOC106581474 coding downstream 144937 40992078 ~ 40996568 (+)
LOC110507231 LOC106581468 coding downstream 316102 41163243 ~ 41168484 (+)
LOC110508049 LOC106581477 coding downstream 333345 41180486 ~ 41185464 (+)
G2082609 NA non-coding upstream 28355 40812095 ~ 40812351 (+)
G2082604 NA non-coding upstream 34784 40805473 ~ 40805922 (+)
G2082554 NA non-coding upstream 144172 40695608 ~ 40696534 (+)
G2082509 NA non-coding upstream 168179 40671690 ~ 40672527 (+)
G2082525 NA non-coding upstream 200315 40636576 ~ 40640391 (+)
G2082897 NA non-coding downstream 4658 40851799 ~ 40931560 (+)
G2082922 NA non-coding downstream 48275 40895416 ~ 40897545 (+)
G2082974 NA non-coding downstream 85602 40932743 ~ 40933003 (+)
G2082985 NA non-coding downstream 93620 40940761 ~ 40941063 (+)
G2082162 NA other upstream 882955 39957215 ~ 39957751 (+)
G2081949 NA other upstream 906871 39931874 ~ 39933835 (+)
G2081884 LOC106581433 other upstream 1003323 39827658 ~ 39837383 (+)
G2080014 NA other upstream 2895555 37944932 ~ 37945151 (+)
G2083005 NA other downstream 134229 40981370 ~ 40984854 (+)
G2083239 NA other downstream 365063 41212204 ~ 41212772 (+)
LOC110507232 LOC106593204 other downstream 659218 41485189 ~ 41507173 (+)
G2083851 NA other downstream 1124118 41971259 ~ 42112036 (+)
G2084156 NA other downstream 1413382 42260523 ~ 42261637 (+)
G2082888 NA non-coding upstream 407 40842828 ~ 40843107 (+)

Expression


Co-expression Network