RNA id: XM_021588488.2


Basic Information

Item Value
RNA id XM_021588488.2
length 3837
RNA type mRNA
GC content 0.52
exon number 10
gene id LOC110508042
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 40840706 ~ 40847141 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATACACTCCCTTATCCTCCACTGGGCCAGATCAGAGGAGGCTGCTGCCAGACCAAGAGACTGATAGAGACTGGTCGACTACCCAAGCTTGTCTTCACCTGACGAAGAACCACTGAGGCTGATCTGTGCTACATAAAACATCTGGGAGCAAAGTCCATTAACTTTCCCCCACCAGGCTGGATGTAAAGACTGGGAGAATTTCTGATCATAATCTTTACACTCTTTTTGACTCATCTGTATGTTTCATCATTACAACTGTGgtgtagtttttcatgttttaTTCAGTATTTAGAAATTACATTGGGACAggttttggtctggtctggtcaactgccttcctgtctgtgtgtccagAGGAGCTCCCCCATGTCCCCCTGGTTCACCTGGCTGACACCGGCCATTCCCCTGCTACTGCCCTGGCTGGTCAGGGATGGGTCAGGGATGGGTCAGGCAACTGTGTGTTCACGGTGGGATCGTTCGGTTGGTCTGGATGACCGTGGTCTCTTCCAGGAAGGTGAAGTCGTGATCGGTGGTCTCATCCCCTTCCATAACCTCCCTCCTGCTCCAGACCTGAGCTTCAGCCAACCCCCTGACCTGCAGGCCTGTGTCAATTTCCAAGAGGAACCATTGCAATGGGCACATGCGCTGGTGTTTGCGGTGGACGAGATTAACCGCAACCCCTTCCTGCTGCCGGGGGTTCAGCTGGGCTACCGTATCCTGGACAGCTGTAATCAGCACCCCTGGAGCCTGCGAGGGGCACTGTCCCTGTTGTCAGGGGGGAACATCAGATCACGGCCATCTAGTGACTGCCCTGTTCCTCTGGTCATTGGTGATGCATCGTCCACTCAGACCATCATCCTGTCCAGGACCCTGGGgcctctctctgtgcctgtgATCAGTTACCAGGCCAGCTGTGGCTGTCTCAGTGACAAACAGGAGTTCCCTAACTTCTTCAGGACTATCCCCAGTGATGTCTACCAGGCCCTCACCATGGCCCGGCTCACCTGGCTCTTGGGATGGACCTGGGTCGGGGCTATTGCTGTAGACAACGACTACGGTCGTCTGGCCATACAgGTGTTTGAGGAGGAGATTCGGGGGACGGGGGTGTGCCTGGCGTTCTTTGAGACCCTCAACCGGGCAAACCTGGTGAGGGATGTGAAGCGAGCAGCAGACACGGTCCAGGCCTCGACAGCGCGGGTGATCCTGGTCTTCCTCTGGTACACTGACATGGGGGCGTTACTACTGGAGCTGGGGAGGAGAAACGTGACGGACAGGCAGTTTCTGGCCAGTGAGGCATGGAGCACCAGCGGACAACTCCTACGAAACCCCGCCCTCTTTAACGTCGCTCAGGGCGTCGTGGGTGTGGCTATCCGCAGTGCACCTATTCCTGGCTTTGAGGCCCACCTTCGAAGTCTCAACCCCTCTCGTCGTCCCGGAGATGTCCTGTTGAAGGAACTCTGGGAAACGGTGTTTGGGTGTAGCCCTGGAGCAGCACATGGACACGGCACgtctctgctcccctctccccttcctccaacCCCCTCTGTGTCACtaccacacacccctcctcccacctccagTTCCCCTCATCCACGCCTGGCCTCCTGCAGTGGGGCAGAGACTCTGGAGGGGATACAGAGCCCCTTCACAGACACCTCCCAGCTGAGAATAACCTATAACGTGTACCTGGCTGTGTATTCTGCAGCCCACGCCCTCCACAGCCTGCTGTCCTGCCCCCAGAGAGACAGCCCTACCTGGGGCAGCAGCTTCACCTGCTCCCTTCCTTACAACATCAGCCCAGCGGAGCTGTTGCAGCACCTGAACCAGGTTAACTTCACCACTCCACTTGGGGAGCCGTTCTACTTCCGGGGCGCGGACGTCCCTGCTGTGTACGACCTTGTGAACTGGCAGGCCACGCCCCAGGGGTTGCTCAAACTTGTCACAATTGGCCGTGTAGACGGGTCTAATCTCCTCATCAACCAATCAGCCATCCAGTGGAACACAGGATCTAATATGGTGCCTGTGTCAGTGTGCAGTGACAGCTGTCCCCCAGGCACCCGTGTAGCCAGGAAGAAGGGGGAGCCTGTCTGCTGCTTCGACTGCATATCCTGTGCTGAGGGAGAGGTCAGCAACACAACAGGCTCTTTGCAATGTGACCGGTGTCCTCTGGAGTTCTGGTCCAACAGCCATCGGACCGCCTGCATCCCTCGTCAGCTCGAGTTCCTCTCCTTCAATGACGTGATGGGCGTCACCCTGACCACTGTTGCCGTGTGCGGCGCTGTGGCAACAGTGGCTGTGTTTATGTTCTTTGTGTACCACCGCCACACCCCTCTGGTGCGGGCCAACAACTCGGAGCTGAGCTTCCTGCTTCTCCTGTCACTCAAGCTCTGCTTCCTGTGTTCATTGGTGTTCATTGGCCGTCCCTCTGTGTGGGCGTGTCGGATCCGCCAGGCAGCATTTGGGGTCATCTTCGTGCTCTGCCTCTCCTGCCTCCTGGTCAAGACCATCGTGGTTCTGGCTGCGTTCCGCTCAGCCAGGCCCGGTGCAGGGCAGCTGATGAGGTGTTTTGGACCCGTTCAGCAGAGAGGGAGTGTCTTCCTCTTTACCAGTGTTCAGGTGATCATCTGTGCCGTGTGGCTGTCCACGAGCCCTCCCCTGCCTTACCGTGACCTAGGCCTCAAGGGGTCAAAGGTCATCCTGGAGTGTGAGGTTGGCTCTGTGGTCGGCTTCTCTCTGGTGCTGGGCTACATTGGCCTGctggcctccctctgtctcctcttagCCTTCCTGGCCAGGAAACTCCCAGACAACTTCAACGAGGCCAAGCTCATCACCTTCAGCATGCTGATCTTCTGTGCTGTGTGGATTTCATTTGTCCCTGCCTACATCAGCTCTCCTGGGAAGTACGCAGACGCTGTGGAGATATTCGCCATCTTAGCTTCCAGCTTTGGGTTACTGCTATGCATCTTCGCTCCGAAGTGTTACATCATCCTCCTGAGACCAGAGAGAAACACCAAGAAACACATGATGTCCAAATAGAAACCACCAAGAAAGACATGATGTCCAATTAGAAACCACCAAGAAAAACATGATGTCCAATTAGAAACCAGCAGGAAACACATGATGTCCAAATAGgaaccaccaagaaacacatgaTGTCCAATTAGAAACCAGCAGGAAACACATGTCCAATTAGAAACCACCAAGAAAGACATGATGTCAAATTagaaaccaccaagaaacacatgaTGTCCAATTAGAAACCACCAAGAAATACCTGATGTCCAATTagaaaccaccaagaaacacatgaTGTCCAAATATAGTCTTCAATGTGTTTAGTTAATCACACCATCTCACTGTTGTTTTGTATGGTAAAACCTTAACAAGGAATTACATGATACATTGTATAATACTTACCGGCAAGTTACATATTTACCAGTCAATACCTAAAGTTGATGGACACAAATGAACAGGACTTTTCTACCCTGCTGGGAGTGTATGTTTCTAATGATTCAAAAGTGAGTCAGCAGTGACTCATAGTTGAGTCAAGTGAATCAATAGTTAGTCAACAGTGAATCAACACTTAGTAAGTCTTCCTCTGAATCACAATATGACTCTTCTTTTCATTAGATTTTAATGACATCCATTTCTCCCCTGAATGTCAGTTCTGAAAACAAATCAGTTCAATTAGATATGGTTAATGAAAAATGTTGTTTTCTCCTTTCACATTTTATGAGGTGTGTAATTCTCTATTCCAATATGACACAGTTTCCTGAAATTTTAATAAAATATATCGCTAAATTTCAACTGTTCAATAAAAACACATTCAAGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2381411 lncRNA upstream 28355 40812095 ~ 40812351 (+) True G2082609
TU2381405 lncRNA upstream 34784 40805473 ~ 40805922 (+) False G2082604
TU2381406 lncRNA upstream 34784 40805620 ~ 40805922 (+) True G2082604
TU2381352 lncRNA upstream 144172 40695608 ~ 40696534 (+) True G2082554
TU2381291 lncRNA upstream 168179 40671690 ~ 40672527 (+) False G2082509
TU2381767 lncRNA downstream 4658 40851799 ~ 40931560 (+) True G2082897
TU2381782 lncRNA downstream 26720 40873861 ~ 40874825 (+) False LOC110507226
TU2381784 lncRNA downstream 28885 40876026 ~ 40876430 (+) True LOC110507226
TU2381792 lncRNA downstream 48275 40895416 ~ 40897545 (+) True G2082922
TU2381855 lncRNA downstream 85602 40932743 ~ 40933003 (+) True G2082974
XM_036964769.1 mRNA upstream 642 40692403 ~ 40840064 (+) False LOC110507225
XM_036964771.1 mRNA upstream 642 40692403 ~ 40840064 (+) False LOC110507225
XM_036964770.1 mRNA upstream 642 40729015 ~ 40840064 (+) True LOC110507225
XM_036964772.1 mRNA upstream 4287 40692403 ~ 40836419 (+) False LOC110507225
XM_036965107.1 mRNA upstream 170627 40661246 ~ 40670079 (+) False LOC110508037
LOC110507226 mRNA downstream 9989 40857130 ~ 40878102 (+) False LOC110507226
LOC118944684 mRNA downstream 57373 40904514 ~ 40907313 (+) True LOC118944684
XM_021588491.2 mRNA downstream 144937 40992078 ~ 40996568 (+) True LOC110508044
XM_021587121.2 mRNA downstream 316102 41163243 ~ 41168484 (+) True LOC110507231
XM_036965615.1 mRNA downstream 333345 41180486 ~ 41185464 (+) True LOC110508049
TU2380828 other upstream 882955 39957215 ~ 39957751 (+) True G2082162
TU2380578 other upstream 906871 39931874 ~ 39933835 (+) True G2081949
TU2380477 other upstream 927628 39895667 ~ 39913078 (+) False LOC110507223
TU2380510 other upstream 1003323 39827658 ~ 39837383 (+) True G2081884
TU2378436 other upstream 2895555 37944932 ~ 37945151 (+) True G2080014
TU2381889 other downstream 134229 40981370 ~ 40984854 (+) True G2083005
TU2382143 other downstream 365063 41212204 ~ 41212772 (+) True G2083239
TU2382447 other downstream 659218 41506359 ~ 41507173 (+) True LOC110507232
TU2382880 other downstream 1124118 41971259 ~ 42112036 (+) False G2083851
TU2382881 other downstream 1125687 41972828 ~ 42012992 (+) True G2083851

Expression Profile