RNA id: LOC110507226


Basic Information

Item Value
RNA id LOC110507226
length 3089
RNA type mRNA
GC content 0.56
exon number 14
gene id LOC110507226
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 40857130 ~ 40878102 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGACACCACGTTCCCATAAcgtgaaggcagacgcactgtcccggctgaATGACACAGAGGAGCGTTCCATGGATCCCACCCCTATACTCCCGGCCACCTgcctggtggcgccggtagtgtgggagctggacgcagaCATTGAGCAGagtcagaccaaGACTCCTGCGGGGGATGACTGGTTCCGGCGTGCGGAGGAAACATGGGACGCCGCCCATGTTCACCTTCAGCGTGCCGTGCTGCGCCAGAAAGCCTgcgcagaccgtcaccgcagtgaggccctgGAGGACccggtctggctctcgaccccaAACATGccactccgcctgccctgccggaagctgtgTCAGCGGTTTGTGGGGCAATTCAAAGttctgaggagactgaacgaggatGGTGGTAGTCATAGACGTAACCCCTTCCTGCTGCCTGGGGTCCGGCTGGGCTACCGTATCCTGGACAGCTGTAATCAGCACCACCGGAGCCTGCGAGGGGCACTGTCCCTGGTGTCAGGGGGGAACATCAGATCACGGCCATCTAGTGACTGCCCTGTTCCTCTGGTCATTGGTGATGCATCGTCCACTCAGACCATCATCCTGGCCAGGACCCTGGGgcctctctctgtgcctgtgATCAGTTACCAGGCCAGCTGTGGCTGTCTCAGTGACAGACAGGAGTTCCCTAACTTCTTCAGGACCATCCCCAGTGATGTCTACCAGGCCCTCACCATGGCCCGGCTCACCTGGCTCTTGGGATGGACCTAGGTGGGGGCTATTGCTATAGACAATGACTACGGTCGTCTGGCCATACAGGTGTTTGAGGAGGAGATTCGGGGGACGGGGGTGTGCCTGGCGTTCTTTGAGACCCTCAACCGGGCGAACCTGGTGAGGGATGTGAAGCGAGCAGCAGACACGGTCCAGGCCTCGACAGCGCGGGTGATCCTGGTCTTCCTCTGGTACACTGACATGGGGGCGTTACTGCACCAGCGGACAACTCCTACGAAACCCCGCCCTCCTTAACATCGCTCAGGGCGTCGTGGGTGTGGCTATCTGCAGTGCACCTATTCCTGGCTTTGAGGTACACCTTCGAAGTCTCAACCCCTCTCATTGTCCCGGAGATGTCCTGTTGAAGGAACTCTGGGAAACGGTGTTTGGTGGGGCAGAGACTCTGGAGGGGATACAGAGCCCCTTCACAGACACCTCCCAGCTGAGAATAACCTATAACGTGTACCTGGCTGTGTATTCTGCACAGCCTGCTGTCCTGCCCCCAGAGACACAGCCCTACCTGGGGCAGCAGCTTCACCTGCTCCCTTCCTTACAACATCAGCCCAGCGGAGCTGTTGCAGCACCTGAACCAGGTTAACTTCACCACTCCACTTGGGGAGCTGTTCTACTTCCGGGGCGCGGACGTCCCTGCTGTGTACGACCTTGTGAACTGGCAGGCCACGCCCCAGGGGTTGCTCAAACTTGTCACAATTGGCCGTGTAGACGGGTCTAATCTCCTCATCAACCAATCAGCCATCCAGTGGAACACAGGATCTAATATGGTGCCTGTGTCAGTGTGCAGTGACAGCTGTCCCCCAGGCACCCGTGTAGCCAGGAAGAAGGGGGAGCCTGTCTGCTGCTTCGAATGCATCTCCTGTGCTGAGGGAGAGGTCAGCAACACCACAGGCTCTTTGCAATGTGACCGGTGTCCTCTGGAGTTCTGGTCCAACAGCCATTGGACCGCCTGCGTCCCTCGTCAGCTTGAGTTCCTGTCCTTCAATGACGTGATGGGCGTCACCCTGACCACTGTTGCCGTGTGCGGCGCTGTGGCAACAGTGGCTGTGTTTATGTTCTTTGTGTACCACCGCCACACCCCTCTGGTGTGGGCCAACAACTCGGAGCTGAGCTTCCTGCTTCTCCTGTCACTCAAGCTCTGCTTCCTGTGTTCATTGGTGTTCATTGGCCGTCCCTCTGTGTGGGCGTGTCGGATCCGCCAGGCAGCATTTGGGGTCATCTTCGTGCTCTGCCTCTCCTGCCTCCTGGTCAAGACCATCGTTGTTCTGGCTGCGTTCCGCTCAGCCAGGCCTGGTGCTGGGCAGCTGATGAGGTGTTTTGGACCCGTTCAGCAGAGAGGGAGTGTCTTCCTCTTTACCAGTGTTCAGGTGATCATCTGTGCCGTGTGGCTGTCCATGAGCTCTCTCCTGCCTTACCGTGACCTAGGCCTCAAGGGGTCAAAGGTCATCCTGGAGTGTGAAGTGGGCTCTGTGGTTGGCTTCTCTCTGGTGCTGGGCTACATTGGCCTGctggcctccctctgtctcctcttagCCTTCCTGGCCAGGAAACTCCCAGACAACTTCAACGAAACCAAGCTCATCACCTTCAGCATGCTGATCTTCTGTGCTGTGTGGATTTCATTTGTCCCTGCCTACATCAGCTCTCCTGGGAAGTACGCAGACGCTGTAGAGATATTCGCCATCTTAGCTTCCAGCTTTGGGTTACTGCTTTGCATCTTTGCTCCGGAGTGTTACATCATCCTCCTGAGACCAGAGAGAAACACCAAGAAACACATTATGTCCAAATAGgaaccaccaagaaacacatgaTGTCCAATTAGAAACCAGCAAGAAACACATGATGTCCAATTAGAAACCAGCAAGAAACATATGATGTCCAATTTAGAAACCACCAAGAAGTATATGATGTCCAAATATAGTCTTCAATGTGTTTAGTTAATCACACCATCTCACTATTGTTTTGTATGGTAAAACCTTAACAAGGAATTACATGATACATTGTATAATACTTACCAGCAAGTTACATATTTAACAGACAATACCTAAAGTTGATGGACACAAATGAACAGGACTTTTCTACCCTGCTGGTAGTGTATGTTTCTAATGATTCAAAAGTGAGTCAGCAGTGACTCATGGTTCAGTCAACAGTGAATCAATAGTTAGTCAACAGTGAATCAACACTTAATAAGTCTTCCTCTGAATCCCATCATCAATTTAATGACATCCATTTCTCCCCTGAATGTTAGTTCTGAAAACAAATCAGTTCAATTAGATATGGTTAATGAAAAATGTTGTTTTCTCCTTTCACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2381758 lncRNA upstream 11091 40845472 ~ 40846039 (+) True LOC110508042
TU2381754 lncRNA upstream 14023 40842828 ~ 40843107 (+) True G2082888
TU2381753 lncRNA upstream 14679 40842242 ~ 40842451 (+) False LOC110508042
TU2381411 lncRNA upstream 44779 40812095 ~ 40812351 (+) True G2082609
TU2381405 lncRNA upstream 51208 40805473 ~ 40805922 (+) False G2082604
TU2381792 lncRNA downstream 17314 40895416 ~ 40897545 (+) True G2082922
TU2381855 lncRNA downstream 54641 40932743 ~ 40933003 (+) True G2082974
TU2381866 lncRNA downstream 62659 40940761 ~ 40941063 (+) True G2082985
TU2381868 lncRNA downstream 64400 40942502 ~ 40942830 (+) True G2082987
TU2381886 lncRNA downstream 99051 40977153 ~ 40977372 (+) True G2083002
XM_021588488.2 mRNA upstream 9989 40840706 ~ 40847141 (+) False LOC110508042
XM_036964769.1 mRNA upstream 17066 40692403 ~ 40840064 (+) False LOC110507225
XM_036964771.1 mRNA upstream 17066 40692403 ~ 40840064 (+) False LOC110507225
XM_036964770.1 mRNA upstream 17066 40729015 ~ 40840064 (+) True LOC110507225
XM_036964772.1 mRNA upstream 20711 40692403 ~ 40836419 (+) False LOC110507225
LOC118944684 mRNA downstream 26412 40904514 ~ 40907313 (+) True LOC118944684
XM_021588491.2 mRNA downstream 113976 40992078 ~ 40996568 (+) True LOC110508044
XM_021587121.2 mRNA downstream 285141 41163243 ~ 41168484 (+) True LOC110507231
XM_036965615.1 mRNA downstream 302384 41180486 ~ 41185464 (+) True LOC110508049
XM_021588498.2 mRNA downstream 316698 41194800 ~ 41203695 (+) True LOC110508050
TU2381759 other upstream 11091 40844829 ~ 40846039 (+) False LOC110508042
TU2381755 other upstream 12350 40843514 ~ 40844780 (+) False LOC110508042
TU2380828 other upstream 899379 39957215 ~ 39957751 (+) True G2082162
TU2380578 other upstream 923295 39931874 ~ 39933835 (+) True G2081949
TU2380477 other upstream 944052 39895667 ~ 39913078 (+) False LOC110507223
TU2381889 other downstream 103268 40981370 ~ 40984854 (+) True G2083005
TU2382143 other downstream 334102 41212204 ~ 41212772 (+) True G2083239
TU2382447 other downstream 628257 41506359 ~ 41507173 (+) True LOC110507232
TU2382880 other downstream 1093157 41971259 ~ 42112036 (+) False G2083851
TU2382881 other downstream 1094726 41972828 ~ 42012992 (+) True G2083851

Expression Profile