RNA id: TU2381754


Basic Information

Item Value
RNA id TU2381754
length 280
lncRNA type intronic
GC content 0.38
exon number 1
gene id G2082888
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 40842828 ~ 40843107 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacaaaactttaggaacacctgctcttatatgacatagactgacccagtgaatccaagtgaaagataagatcctttattgatgttacttgttaaattcacttcagtcagtaaagatgaaggggaggagacaagttaaaggatttaaaatattttttttaagccttgagaaaattgagacatggattgtgtatattggccattcagagggtgaatgtgcaagacaaaagattgtgaacgtggtatggtagtaggtgccaggcacacaggtttgtgtcaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2381753 lncRNA upstream 377 40842242 ~ 40842451 (+) False LOC110508042
TU2381411 lncRNA upstream 30477 40812095 ~ 40812351 (+) True G2082609
TU2381405 lncRNA upstream 36906 40805473 ~ 40805922 (+) False G2082604
TU2381406 lncRNA upstream 36906 40805620 ~ 40805922 (+) True G2082604
TU2381352 lncRNA upstream 146294 40695608 ~ 40696534 (+) True G2082554
TU2381758 lncRNA downstream 2365 40845472 ~ 40846039 (+) True LOC110508042
TU2381767 lncRNA downstream 8692 40851799 ~ 40931560 (+) True G2082897
TU2381782 lncRNA downstream 30754 40873861 ~ 40874825 (+) False LOC110507226
TU2381784 lncRNA downstream 32919 40876026 ~ 40876430 (+) True LOC110507226
TU2381792 lncRNA downstream 52309 40895416 ~ 40897545 (+) True G2082922
XM_036964769.1 mRNA upstream 2764 40692403 ~ 40840064 (+) False LOC110507225
XM_036964771.1 mRNA upstream 2764 40692403 ~ 40840064 (+) False LOC110507225
XM_036964770.1 mRNA upstream 2764 40729015 ~ 40840064 (+) True LOC110507225
XM_036964772.1 mRNA upstream 6409 40692403 ~ 40836419 (+) False LOC110507225
XM_036965113.1 mRNA upstream 174196 40667017 ~ 40668632 (+) True LOC118944712
LOC110507226 mRNA downstream 14023 40857130 ~ 40878102 (+) False LOC110507226
LOC118944684 mRNA downstream 61407 40904514 ~ 40907313 (+) True LOC118944684
XM_021588491.2 mRNA downstream 148971 40992078 ~ 40996568 (+) True LOC110508044
XM_021587121.2 mRNA downstream 320136 41163243 ~ 41168484 (+) True LOC110507231
XM_036965615.1 mRNA downstream 337379 41180486 ~ 41185464 (+) True LOC110508049
TU2380828 other upstream 885077 39957215 ~ 39957751 (+) True G2082162
TU2380578 other upstream 908993 39931874 ~ 39933835 (+) True G2081949
TU2380477 other upstream 929750 39895667 ~ 39913078 (+) False LOC110507223
TU2380510 other upstream 1005445 39827658 ~ 39837383 (+) True G2081884
TU2378436 other upstream 2897677 37944932 ~ 37945151 (+) True G2080014
TU2381755 other downstream 407 40843514 ~ 40844780 (+) False LOC110508042
TU2381759 other downstream 1722 40844829 ~ 40846039 (+) False LOC110508042
TU2381889 other downstream 138263 40981370 ~ 40984854 (+) True G2083005
TU2382143 other downstream 369097 41212204 ~ 41212772 (+) True G2083239
TU2382447 other downstream 663252 41506359 ~ 41507173 (+) True LOC110507232

Expression Profile