RNA id: XM_021587121.2


Basic Information

Item Value
RNA id XM_021587121.2
length 2457
RNA type mRNA
GC content 0.56
exon number 10
gene id LOC110507231
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 41163243 ~ 41168484 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGTGGGTCCCTCTGCCCTGCCTGTGCTACAGAGGGACGGGAATGTGATGCTAGGgggcctcttctccctccatgaCATGGTGATGCAGCCTGACTTCTCCTTCACCTCCAAACCAGCCCGCTCACGCTGCACCGGGTTTAACTTCCGGACATTCCGCTGGATGCGGACCATGATGTTTGCCATCGACGAGATCAACAGAGATGATCATCTGCTCCCCAACTTCACTCTGGGATATAAGATATATGATTCGTGCAGTACTCCTTACCACGCCCTGAGGGCTTCTGTGGAACTTATggggggagaaggggaaggagaggtggaggggggatCCTGTCATGGCCTGGTTCCAGTGGTCATCGGGGATGGAGGTTCCACTCTGTCTCTGGTGGTGGCTCGCTTCCTGGGAGTCTTCAAAGTACCTCAGgtcagtTATTTCTCTAGCTGTGCATGTCTCAGTAACAAGGCAGAGTTCCAAGCCTTCCTCAGGACCATGCCCAGTGACTTCTTCCAGGTGGATGCTCTGGTGCAGCTCGTCCAGCACTTCAGCTGGAAATGGGTGGGTGTGGTTGCCGGGGACGATGCATATGGTCGTGGGGGAGCACAACTATTTTCTGAGAAGGTGCAGAGGCTTGGTGCCTGCATGGCCCTCCATGAAATCATCCCCAAAAACCACGCGGAGGGGGCCATGGCCTCCATCGTTGCCCGTATTCGGTCCTCTGGGGCTGGCGTGGTTCTGGTGTTTGCCCTGGAGCAGGATGCTGGCGCTTTGTTTGACGAAGCCCTGCGGCAGGGTCTGACAGGGGGCTCCATGGGCTTCGCCATCCGCCGAGCTGTGCACATCCCTGGACTACAGGAGTTCCTGCTGCGTCTCCACCCCTCCAGCCCAGACGCCTCCGAGGACCCGTTCCTACGCCCTTTCTGGGAGGAGGTGTTTAGGTGTAGCCTGCAGGGTGATGGGGGTGGAGATAGTCAGGGGGGTAAACCTCTGTGCTCTGGGTCTGAGGACCTGGGCAGTGTCAGGAACATCTACTCTGACGTGTCTCAGTTGAGGATATCCTATAATGTGTACAAGGCTGTGTACGCCATCGCCCACGCGCTGCATGCTATGAggagctgtgagacagggagaggaccTTTCCCTCTGCATGCCTGCCCAAATACTGACAGCATACAGCCATGGCAGCTCCTGCACTACCTGAAGCAGGTGGAGTTCTCTAACTCGTTTGGTGATGAGACTAAGTTTGATGTGAACGGGGACCCAGTAGCTGTGTATGACCTGGTGAACTGGCAGTTAGGGGCAGAGGGCCAGGTGAAGTTTGTCACAGTGGGGAGGTTTGACGAGACTACCAGTCTGGGCAGGAAGAAACTATACATCCAGAAAACGGACATCATCTGGAATGGAAACCAGACGACAgtcCCTCTGTCAGTATGCAGTAGCAGCTGTCTTCCAGGCACTCGGAGGGCCATCAGGCCTCACTTCCCTGTCTGCTGCTTTGACTGTGTGGTCTGTACAGCAGGGGAGATTAGCAATCAGACAGATGCTATAGAGTGTGTTCGCTGCCTACCTGAGTTCTGGTCCAATGAGGAGTGTACAGCCTGCATCCCCAAGCAGGTTGACTTCCTGTCCTACGGTGACACAATGGGTATGGCTCTGCTCTCCGTGGCCCTCCTGGGGTCCTTCTGCACTGCCACAGTCGTCCTCATATTCGCCTGTCACCACGCCACCCCCATCGTCAGGGCCAACAACTCTGAGCTGAGCTTCCTACTGCTCTTCTCCTTGACTCTGTGTTTTCTGTGTTCTCTTACTTTCATTGGCCGGCCCTCTGAGTGGTCCTGTATGCTGCGTCACACAGCGTTTGGGATCACCTTCGTCCTCTGCATCTCTTGTGTTCTGGGGAAAACAATAGTGGTGTTGATGGCCTTCAGGGCTACACTTCCAGGCAGTAATGTCATGAAATGGTTTGGGCCTCTACAGCAGAGAGCCTTCATCTCACTCTGTACTGTGGTCCAGGTGGTGATCTGTGCTGTGTGGCTGGCTGTTTCCCCTCCCAGCCCACGCAGACTGATGACACGTGAGAGTGCCTCTGTCATCCTCCTATGTGATGAGGGCTCAGCCCTGGGCTTCTGCCTTGTGCTGGGCTACATCGGCCTgctggcctctctctgtctcctcttagCCTTCCTGGGCAGAAAACTCCCAGACAACTTCAACGAGGCCAAGCTCATCACCTTCAGCATGCTGATCTTCTGTGCCGTGTGGGTGGCCTTCGTCCCTGCCTACGTCAGCTCTCCTGGGAAGTACTCCACGGCCACGGAGGTGTTCGCCATCCTGGGCTCCAGTTTCGGCCTGCTGACCTGCCTCTTCCTGCCCAAATGTTACATCATTCTGCTGAAGCCTGAGAAGAACAACAGGAAACACCTCATGGCCAAGTCTGAACCTGACAAGACATTCTAG

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2382059 lncRNA upstream 22464 41140568 ~ 41140779 (+) True G2083162
TU2381886 lncRNA upstream 185871 40977153 ~ 40977372 (+) True G2083002
TU2381868 lncRNA upstream 220413 40942502 ~ 40942830 (+) True G2082987
TU2381866 lncRNA upstream 222180 40940761 ~ 40941063 (+) True G2082985
TU2381855 lncRNA upstream 230240 40932743 ~ 40933003 (+) True G2082974
TU2382088 lncRNA downstream 2682 41171166 ~ 41172307 (+) True G2083190
TU2382091 lncRNA downstream 5449 41173933 ~ 41174215 (+) True G2083193
TU2382117 lncRNA downstream 30538 41199022 ~ 41199342 (+) True G2083217
TU2382137 lncRNA downstream 41727 41210211 ~ 41210772 (+) True G2083233
TU2382157 lncRNA downstream 70649 41239133 ~ 41239467 (+) True G2083251
XM_021588491.2 mRNA upstream 166675 40992078 ~ 40996568 (+) True LOC110508044
LOC118944684 mRNA upstream 255930 40904514 ~ 40907313 (+) True LOC118944684
LOC110507226 mRNA upstream 285141 40857130 ~ 40878102 (+) False LOC110507226
XM_021588488.2 mRNA upstream 316102 40840706 ~ 40847141 (+) False LOC110508042
XM_036964771.1 mRNA upstream 323179 40692403 ~ 40840064 (+) False LOC110507225
XM_036965615.1 mRNA downstream 12002 41180486 ~ 41185464 (+) True LOC110508049
XM_021588498.2 mRNA downstream 26316 41194800 ~ 41203695 (+) True LOC110508050
XM_036965039.1 mRNA downstream 316705 41485189 ~ 41506611 (+) False LOC110507232
XM_036965019.1 mRNA downstream 352962 41521446 ~ 41571922 (+) True dhx36
LOC118944685 mRNA downstream 610437 41778921 ~ 41781836 (+) True LOC118944685
TU2381889 other upstream 178389 40981370 ~ 40984854 (+) True G2083005
TU2381759 other upstream 317204 40844829 ~ 40846039 (+) False LOC110508042
TU2381755 other upstream 318463 40843514 ~ 40844780 (+) False LOC110508042
TU2380828 other upstream 1205492 39957215 ~ 39957751 (+) True G2082162
TU2380578 other upstream 1229408 39931874 ~ 39933835 (+) True G2081949
TU2382143 other downstream 43720 41212204 ~ 41212772 (+) True G2083239
TU2382447 other downstream 337875 41506359 ~ 41507173 (+) True LOC110507232
TU2382880 other downstream 802775 41971259 ~ 42112036 (+) False G2083851
TU2382881 other downstream 804344 41972828 ~ 42012992 (+) True G2083851
TU2383238 other downstream 1092039 42260523 ~ 42261637 (+) True G2084156

Expression Profile