LOC110508049 (LOC106581477)


Basic Information

Item Value
gene id LOC110508049
gene name LOC106581477
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 41180486 ~ 41185464 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965615.1
ACTTATCTCTCTCCAGGTGATGAGCCTGTGTGGCAGGCTGTGGCTGCTCTACTGTCTCCATGTCCCTGGGTCTGTCTGGGGTCtggatggaggtggagagggggctTGTCGGCTGGAAGCTAAGCCCGTCTCCGGCAGTGTTTATCGGGCAGGAGATGTGGTCATTGGGGGCCTGTTCCCCATCCATGTGGAAGCCCCTCTACCAGAGCAGGAGTTCAGGAGCATTAAAGGAAATTCTACCTGTACAATGTTCAACCAGCGTGCTTACCGCTGGCTCCAGACTATGATCTTTGCTGTGGAGGAGATTAACCGTGACCCAGCCCTCCTGCCTAACCTCAACCTGGGGTTCCTGGCTTCTGACACATGCCGGTCAGAGGGCACCACCCTGGGTGCGGCCCTAGCCATGGTGACCGGCAAGGAGGCCTCCGTGGTGGGCACAGAGTGTGGCACAACTCCTGAGGTTCCCGTCATCATCGGGGATGCCCGCTCCTCAGCTTCCATGGTCGTGGCACAGACCCTCGGGCCGTTTGATTTACCCATGGTGAGTTACTTTGCCACTTGTGCATGCTTGAGTGACAACTGGAGGTACCCCTCATTCTTCCGTACGGTACCCAGCGATGCCTTCCAGGCTCGGGGCATGGCCAAGCTGCTGCGTCAGCTGGGCTGGGTGTGGGTGGGACTGGTGTCAGAGGATGGTGACTATGGCAAGTTTGGGGTTCAGGTGCTTCTCCAAGAGCTCCAGGGATCTGGGGTGTGTGTCGCCTACTCTGAGGTCCTCCCCAAGTTACCATCTAAGAGAAAGATCAGGCACATTGCAGACACCATCAGAGGATCTACTGCCAGAGTGGTGGTGGCATTTGTTGGATTCGCGGGTCATTCAGGGGCCCTGATGGAAGAGGTTGTCCGTCAGAACATTACAGATAAGCAGTGGATTGCCTCAGAGGCCTGGGTCACTTTCTCTACTATCGCCGCCCCAAAAAACCTGCCCTCTCTTGCCGGGACAATCGGTTTTGCCCTGAAGAAAGCTGAAATTCCCGGCTTGGGGCCTTTCCTAACACGCCTCCATCCAGACGGGGACTACCAGAAGTCCGACCCCTTCCTGAGGGAATTGTGGGAGGAGATGTTTGTGTGTTCTCTGGGGGTTGACCCCAGCGTGACACTGCCTTCCAGGCGACAGTGTACTGGGTCAGAGGTCATACGTGAAGGGGAGAGCCAGTATGCTGACGTGTCTCAGCTGAGAGCCAGCTACAATGTGTACAAGGCTGTGTACGCCATCGCCTACGCCATACAGGATATGATGGCCTGTCGACCAGGGGATGGAGTCTTTAATGGTGGACAGTGCCCTGATATCAGGAAGCTTCAGCCCAGCCAGATTGTTCATTACCTGAGGGGAGTGAACTTCAGTACTCCTGTGGGGGAATCTTTCCACTTCGACATTAATGGTGATCCGCCTGCCTCTTATGACATCATCAACTGGCATGTGACCCCCGAGGGGACGGCAGAGTTTGTCCAGGTCGGACATTTTCTGTCCTCTGAGGGATCGGACGACCAGTTTCACATCGACATGGATAAAGTGGTGTGGGGTGGGGGCAGCGGAGATGAGGTCCCTGTGTCTGTATGCAGTGCTGACTGTCCCCCTGGTACCAGGCATGCGGTACAGAAGGGGAAGCCTGTGTGCTGCTTTGACTGTCTGTCCTGTGCTGAGGGAGAGATCAGcaacacaacagGGTCAGTTGAGTGTATTAGGTGTCCAGAGCGGTTCTGGTCCAACCCTGATCGTACGGCCTGCATCCCCCAGCTGGTGGACTTCCTCTCCTACAGCGACACCATGAGCGTCATCCTGTCTGTCATCTCAGTTTCCGGGGCAACACTCACAGCCGGTGCCCTGGCCACCTTCATCTACCACCGTCACACTGCCCTGGTGAAAGCCAACAACTCAGAGCTCAGCTTCCTGCTCCTTCTGTCGCTCAAGCTCTGCTTCCTGTGTGCACTGGTTTTCATTGGCCGGCCGAAGCCGTGGACATGCATGCTGAGACACACCCTGTTTGGTATAAGCTTTGTGTTCTGCATCTCCTGTCTGCTCAGCAGGactgtggtggtgctggtggcCTTCAGGGCCACTCTGCCTGGAGAGAACCTGATGAGATACTTCAGCCCCACCCAGCAGAGGATGGGTATCTCACTCTGCACACTCATCCAGGTGCTGATCTGTGTGCTGTGGCTGGCCTTAGCTCCACCCCGACCTGCTgagaggaggggcagagagggtcggGGCCCGAGGGTCATCCTGGAGTGTGAGGTGGGTTCTGTGGTCGGCTTCTCTCTGGTGCTAAGCTACATCGGCCTTctggcctccctctgtctcctcttagCCTTCCTGGCCAGGAAACTCCCAGACAACTTTAATGAGGCCAAGTTCATCACCTTCAGCATGCTGATCTTCTGTGCCGTGTGGATCTCCTTCATCCCTGCCTACGTCAGCTCTCCTGGGAAGTACACAGTAGCTGTAGAGATCTTTGCCATCCTGGCCTCCAGCTTTgggctgctgttctgtctgtttgcTCCAAAATGTTTCATTATCCTCCTGAGACCAGAGAGAAACACCAAGAAACACATGATGTCCAAATagaaaccaccaagaaacacatgatgtccaaatagaaaccaccaagaaacacatgatgtccaattagaaaccaccaagaaacacattATGGACAAATAGAAACCACCAGGAAACACATGATGTCCAATTagaaaccaccaagaaacacatgaTGGACAAATagaaaccaccaagaaacacatgaAGTCCAATTCGAAACCATTAAGAAACACATGATGGACAAATagaaaccaccaagaaacacatgaTGTCCAATTCGAAACCATTAAGAAACACATGATGGACAAATagaaaccaccaagaaacacatgatgtccaattagaaaccaccaagaaacacatgatgtccaattagaaaccaccaagaaacacatgatgtccaaatagaaaccaccaagaaacacatgatgtccaattagaaactaccaagaaacacatgatgtccaattagaaaccaccaagaaacacatattgtccaattagaaaccaccaagaaacacatgaTGTCCAAATATTAACTTACACATGCTCATATCGTGATTTAGGGCTCGTTGAGAATCAACATGGGAATGTCCATTCTGTTTGGAAACATTATTTTCCTCCTTCACTTCACTTTGTTAATATTAGAATGTGTTCTTATAGTGTGTCAGAATGAAATATGAACAATACCAATAAAGTTTACTTAGTGTCTAC

Function

NR:

description
extracellular calcium-sensing receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965615.1 True 3319 mRNA 0.52 11 41180486 41185464

Neighbor

gene id symbol gene type direction distance location
LOC110507231 LOC106581468 coding upstream 12002 41163243 ~ 41168484 (+)
LOC110508044 LOC106581474 coding upstream 183918 40992078 ~ 40996568 (+)
LOC118944684 LOC106613262 coding upstream 273173 40904514 ~ 40907313 (+)
LOC110507226 LOC106581479 coding upstream 302384 40857130 ~ 40878102 (+)
LOC110508042 LOC106613262 coding upstream 333345 40840706 ~ 40847141 (+)
LOC110508050 LOC106581466 coding downstream 9336 41194800 ~ 41203695 (+)
LOC110507232 LOC106593204 coding downstream 299725 41485189 ~ 41507173 (+)
dhx36 dhx36 coding downstream 335982 41521446 ~ 41571922 (+)
LOC118944685 NA coding downstream 593457 41778921 ~ 41781836 (+)
LOC110507284 sucnr1 coding downstream 1045894 42231358 ~ 42242002 (+)
G2083193 NA non-coding upstream 6271 41173933 ~ 41174215 (+)
G2083190 NA non-coding upstream 8179 41171166 ~ 41172307 (+)
G2083162 NA non-coding upstream 39707 41140568 ~ 41140779 (+)
G2083002 NA non-coding upstream 203114 40977153 ~ 40977372 (+)
G2082987 NA non-coding upstream 237656 40942502 ~ 40942830 (+)
G2083217 NA non-coding downstream 13558 41199022 ~ 41199342 (+)
G2083233 NA non-coding downstream 24747 41210211 ~ 41210772 (+)
G2083251 NA non-coding downstream 53669 41239133 ~ 41239467 (+)
G2083351 NA non-coding downstream 134942 41320406 ~ 41320649 (+)
G2083358 NA non-coding downstream 138363 41323827 ~ 41324040 (+)
G2083005 NA other upstream 195632 40981370 ~ 40984854 (+)
G2082162 NA other upstream 1222735 39957215 ~ 39957751 (+)
G2081949 NA other upstream 1246651 39931874 ~ 39933835 (+)
LOC110507223 LOC106613251 other upstream 1267408 39781189 ~ 39938079 (+)
G2083239 NA other downstream 26740 41212204 ~ 41212772 (+)
G2083851 NA other downstream 785795 41971259 ~ 42112036 (+)
G2084156 NA other downstream 1075059 42260523 ~ 42261637 (+)
G2084659 NA other downstream 1877824 43063288 ~ 43064257 (+)

Expression


Co-expression Network