LOC110508050 (LOC106581466)


Basic Information

Item Value
gene id LOC110508050
gene name LOC106581466
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 41194800 ~ 41203695 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021588498.2
atgtgcctgtgtggctggctgtggctgcTCTACTGTCTCCATGTCCCTGGGTGTGTCTGGGGTCtggatggaggtggagagggggctTGTCGGCTAATAGCTAAGCCCGTCTCAGGCAGTGTTTATCGGGCAGGAGATGTGGTCATTGGGGGCCTGTTCCCCATCCATGTGGAAGCCCCTTCGCCAGAGCAGGAGTTCAGGAGCATTAAGGAAAATTCTACCTGTACAATTTTCTACCAGCGTGCTTACCGCTGGCTCCAGACTATGATCTTTGCTGTGGAGGAGATTAACCGTGACCCAGCCCTCCTGCCTAACCTCACCCTGGGGTTCCTGGCTTCTGACACATGCCTGTCAGAGGGCACCACCCTGGGGGCAGCCCTAGCCATGGTGACTGGCCAGGAGGCCTCTGTGGTGGGCACAGAATGTGGCACAACCCCTGAGGTTCCCATCATCATCGGGGATGCCCGCTCCTCAGCTTCCATCGTGGTGGCACAGACCCTTGGGCCGTTTGATTTACCCATGGTGAGTTACTTTGCCTCCTGCGCGTGTTTGAGTGACACCTGGAGGTACCCCTCATTCTTCCGTACGGTACCCAGCGATGCCTTCCAGGCTCGGGGCATGGCCAGGCTGCTGCATCAGCTGGGCTGGGTGTGGGTGGGGCTGGTGTCAGGGGATGATGACTATGGCAAGTTTGGGGTTCAGCTGCTTCTCCAAGAGCTCCAGGGATCTGGGGTGTGTGTCGCCTACTCTGAGGTCATCCCCAAGGTAGGATCTCAGAGACGTATCAGGTACATCGTGGACACCATCAGAGGATCGACTGCCAGAGTGGTGGTGGCATTTGCTATCACAAAGGATGCACATGCCCTGATGGAAGAGGTTGTCCGTCAGAACATTACAGATAAGCAGTGGATTGCCTCAGAGGCCTGGGTCACtgactctactctctcctcccctgaaaACCTGCCCTCTCTTGCCGGGACCATTGGATTTGCCCTGAAGAAAGCTGACATTCCCGGCTTGGGGACTTTCCTAACACGTCTCCATCCAGATGGGAACTATCAGAAGTCTGACCCCTTCCTGaagtcaatgtgggaagagatgtTTGGGTGTTCTCTGGGGGTTGAACTCAGCATGACCCAGTCGTCCAGGCGACAGTGTACTGGGTCAGAGGTCATAGGTGAGGGGGAGAGCCAGTATGCTGACGTGTCTCAGCTGAGAGCCAGCTACAATGTGTACAAGGCTGTGTACGCCATCGCCTACGCCATACAGGATATGATGGCCTGTCGACCAGGGGATGGAGTCTTTAATGGTGGACAGTGCCCTGATATCAGGAAGCTTCAGCCCAGCCAGATTGTTCATTACCTGAGGGGAGTGAACTTCAGTACTCCTGTGGGGGAATCTTTCCACTTCGACATTAATGGTGATCCGCCTGCCTCTTATGACATCATCAACTGGCATGTGACCCCCGAGGGGACGGCAGAGTTTGTCCAGGTCGGACATTTTCTGTCCTCTGAGGGATCGGGCGGCCAGATTGACATCGACATGGATAAAGTGGTGTGGGGTGGGGGCAGCGGAGATGAGGTCCCTGTGTCTGTATGCAGTGCTGACTGTCCCCCTGGTACCAGGCATGCGGTACAGAAGGGGAAGCCTGTGTGCTGCTTTGACTGTCTGTCCTGTGCTGAGGGAGAGATCAGcaacacaacagGGTCAGTTGAGTGTATTAGCTGTCCAGAGCGGTTCTGGTCCAACCCTGATCGTACGGCCTGCATCCCCCAGCTGGTGGACTTCCTCTCCTACAGCGACACCATGGGCGTCATCCTGTCTGTCATCTCAGTTTCCGGGGCAACACTCACAGCCGGTGCCCTGGCCACCTTCCTCTACCACCGTCACACGGCCCTGGTGAAAGCCAACAACTCTGAGCTCAGCTTCCTGCTCCTGCTGTCACTCAAGCTCTGCTTCCTGTGTGCTCTGGTTTTCATTGGTCAGCCGAACCCGTGGACGTGCATGCTGAGACACACCCTGTTTGGTATAAGCTTTGTGTTCTGCATCTCCTGTCTGCTCAGCAGGactgtggtggtgctggtggcCTTCAGGGCCACTCTGCCTGGAGAGAACCTGATGAGATACTTCAGCCCCACCCAGCAGAGGATGGGTATCTCACTCTGCACACTCATCCAGGTGCTGATCTGTGTATTGTGGCTGGCCTTAGCTCCACCCCAACCGgctgagaggggaggaagagagggtcgTGGGCCGAGGGTCGTCCTGGAGTGTGAGGTGGGCTCTGTGGTCGGCTTCTCTCTGGTGCTGGGCTACATCGGCCTGctggcctccctctgtctcctcttagCCTTCCTGGCCAGGAAACTCCCAGACAACTTCAACGAGGCCAAGTTCATCACCTTCAGCATGCTGATCTTCTGTGCCGTGTGGATCTCCTTCATCCCTGCCTACGTCAGCTCTCCTGGGAAGTACACAGTAGCTGTAGAGATCTTTGCCATCCTGGCCTCCAGCTTTgggctgctgttctgtctgtttgcTCCAAAGTGTTACATCATCCTTCTGAGACCAGAGAGAAACACCAAGAAACACATGATGTCCAAATAGAAACCATCAAGAAACACATGATGTCCAATTaga

Function

NR:

description
extracellular calcium-sensing receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021588498.2 True 2640 mRNA 0.56 11 41194800 41203695

Neighbor

gene id symbol gene type direction distance location
LOC110508049 LOC106581477 coding upstream 9336 41180486 ~ 41185464 (+)
LOC110507231 LOC106581468 coding upstream 26316 41163243 ~ 41168484 (+)
LOC110508044 LOC106581474 coding upstream 198232 40992078 ~ 40996568 (+)
LOC118944684 LOC106613262 coding upstream 287487 40904514 ~ 40907313 (+)
LOC110507226 LOC106581479 coding upstream 316698 40857130 ~ 40878102 (+)
LOC110507232 LOC106593204 coding downstream 281494 41485189 ~ 41507173 (+)
dhx36 dhx36 coding downstream 317751 41521446 ~ 41571922 (+)
LOC118944685 NA coding downstream 575226 41778921 ~ 41781836 (+)
LOC110507284 sucnr1 coding downstream 1027663 42231358 ~ 42242002 (+)
LOC110507235 LOC106581497 coding downstream 1194994 42398689 ~ 42416136 (+)
G2083193 NA non-coding upstream 20585 41173933 ~ 41174215 (+)
G2083190 NA non-coding upstream 22493 41171166 ~ 41172307 (+)
G2083162 NA non-coding upstream 54021 41140568 ~ 41140779 (+)
G2083002 NA non-coding upstream 217428 40977153 ~ 40977372 (+)
G2082987 NA non-coding upstream 251970 40942502 ~ 40942830 (+)
G2083233 NA non-coding downstream 6516 41210211 ~ 41210772 (+)
G2083251 NA non-coding downstream 35438 41239133 ~ 41239467 (+)
G2083351 NA non-coding downstream 116711 41320406 ~ 41320649 (+)
G2083358 NA non-coding downstream 120132 41323827 ~ 41324040 (+)
G2083370 NA non-coding downstream 130078 41333773 ~ 41338022 (+)
G2083005 NA other upstream 209946 40981370 ~ 40984854 (+)
LOC110508042 LOC106613262 other upstream 348761 40840706 ~ 40847141 (+)
G2082162 NA other upstream 1237049 39957215 ~ 39957751 (+)
G2081949 NA other upstream 1260965 39931874 ~ 39933835 (+)
LOC110507223 LOC106613251 other upstream 1281722 39781189 ~ 39938079 (+)
G2083239 NA other downstream 8509 41212204 ~ 41212772 (+)
G2083851 NA other downstream 767564 41971259 ~ 42112036 (+)
G2084156 NA other downstream 1056828 42260523 ~ 42261637 (+)
G2084659 NA other downstream 1859593 43063288 ~ 43064257 (+)

Expression


Co-expression Network