LOC110507232 (LOC106593204)


Basic Information

Item Value
gene id LOC110507232
gene name LOC106593204
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 41485189 ~ 41507173 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965039.1
GCTGCTCGGTTAGAACGTAAATCGCGGATCATCCTCGAGGAGCATTGACGTCTATCTCCTCCAGTGCGCATCTAAAGTGCACTGGTAGTGTTAAAAAGTGTACTATTCTGGAAGCTACTTTCCGTTAAGGTTAAGATATATCCAACTGGACTGCTCAAATATAGCGTGACTCACCAGGGATGTAGTCTAGCCTATGTGTGCCATTCTAACTTGTGTAACGTTTAGGCATTGTTTCAaagttgttttaaaaatatatatatatatgaacggCTGAACATTGGGCAACACAAGCCAGGTCAACAAAGTTATCTAAATAAAAATGTCCTCGACTCTCAGCTCCCCATCGCCGAACAACAGCAGCCTTTTGACTGCGAGCTACGAGAGGACGGATCTCACAGAGGCGCAAAGACACATAAGCATGCTTCTCTTCGGCTTGTGCGTTGCCATCGCCGCTGCTACCTTCGTGGGAGGTGTGTATTCTCTCATCTTTTTCATCCAGATGAGGTGGAAAACCATCCTGTGGCTCATCGTGGCTTCAATGTCCGTGGACGACCTGCTCAGCGtaatacctctctccctcttcatgcTCCTccagtgggagagagatggagagggagggtcgGTGACCATATGCACGTTATCGGGACTTCTCTATGTGTTCCAAGGACTCTCCAGCAATATGAAGGCTTGCCTTATCGCAGCCTACACCTTCTACGTTACTAAGCGAGAAAGAAGTCCTCGGCCGTTAAGCGTGATGTGGGCGATAGCCGGGGTGTGGGTAGTCAGCCTGGCCGTCAGTGTACTACCCCTGTGCGGCTGGGGGAGTTTCACCCCGGTCTCTCTAGGCTGTTTCCCAGAGAGCCACAGCTTTTACGTTCTGCTCCTTTTCTCTGTGTACTCCTTGTGTTTCTGCGGATTGGTCTTATTCTTCGTTCCTCTCACCTACCAGCTACTGTGTTCCAGGGAGCCACAGAGGACGTTCTACCCGAGCTACTTGGATATCGCCAGGGATCTGAGAGGGGACGGGTCTGCGCCTCTCTGCGACCTCCCGTCCTTCTCTCGGGATAGCTTGGACAGAAGTTTCAGTGCCTACAACGAGCTGTTTCCGGTTGGGTCGGGGAAAGGGGTAGGGGTACGGGGCACAGTGGAAACATATACCTGCCCAACCCCTACCTCTGACGGTGTACTGAGGGATGGAACCATTAGTAACTGGGAATCCCCGGTGTTCTTTGCACAAAAGCGCTTCTCCATGATCCTAGCGGTAGTGAGAGTTGTCTTGTGGATGCCGATGATGACTGTGGTGCTCGTGCGTCATGCTGTGAACGAGCACAGCCCGTCCCTGGAGGCGGTGGGAACTGTGAGCTTCTTCCTGACCCTGCTGGCGCCTGCCGTCACACCGGTGTTCATGCTCTCCGAGCGCTGGATCCACCTTCCGTGCGGGTGCTTCATCAACTGCCCGCGGGACACAGAGCGTGAGCCCACCGTCACTACATTTAAGAATTTTCTTCCCGCAGCAAAGAAGAGGAGGTTTGAGTTTAACCTCTCCTTCCAACAAGGATACGGAATATACAAGTTATCCCGCGCAACCAAACCCCACCACAGCCCGTCCGTGGAGAAGTCTTCCTATCAAAACCTCTTCAACTTCACAGAAAACCAACTTGCTGTGCTGGACAGCTCTGGCGTCGCGAGCCTGCAGGCCGAGCTCGAGTTCATGACCCCACGTGAAGTAGACAGCTCCTCACTGCACGAGCATGGCGAGCTGCTTCTCGAGGCTGAGGCAGGTGGGGGAGAGGCCCTCGCGCTGGCAGACTGCCTCCAGTTTCCTCACGATAACCACGGAGACCAGGACAGCTTCTTCTGTGGATCCAGCTCCCGGGACTGCGAGGACCTCAACCTCACTGACACGTCGTCAGTGTTCGAGGGAACGGAACGGAGACTGTCGCATGTAGAGTGCAGAAAAATGGAGCTGACGGACTGGGAGTGGTGTAGGAGTAAATCCGAGAGGACTCCCAGACAGAGATCTGGGGGAGGTCTGGCCATCCCCCTGTGTGCCTTCCAGGGCACCGTCTCCCTGCACTCCCCCACAGGGaagaccctctccctctccacctatGAGGTCAGCAGCGACGGCCTCACTATCTCCCCCCACGCCGCCAAGAAGGTGGAGGTCTACCGCTCCAAGTCTGTAGGCCACGAGCCCAGTGCAGACGACCCCACCACCAGGGACCCGGACGGGGGAGTggggatggaggtggaggtgggagaggTGGCAATGGGGGACACCAATGTGAAGATCCACCTGGAGGTGTTGGAGATCTGTGACAACGAGGAGGCCATGGACAGCGTGTCCATCATCTCTAACATCAGCCAGTCGTCCACCCACGCCCGCTCCCCGTCGCTGCGCTATTCTCGGAAGGAGAACCGCTTTGTCTCCTGTGACCTGGGGGAGACAGCCTCCTACTCACTGCTCATCCCCAACAGTGGCAACCCCGAGGTggacaacatcaacatcaacatcccTGACACGGTGGAGGCCCACCGGCAGAACAGTCGCAGGCAGAAACAGGAGACGGGAGGCTACCGCGAGGAGATACAGCTGCTCAACGAAGCCTACAGGAAgcaggaagaggacagagaagactgatacacacacacagaggaagcaGGAAGAGGACAGAAaagactgatacacacacaggaagcaagaagaggacagagaagactgataca
>TU2382443
GCTTCAATGTCCGTGGACGACCTGCTCAGCGtaatacctctctccctcttcatgcTCCTccagtgggagagagatggagagggagggtcgGTGACCATATGCACGTTATCGGGACTTCTCTATGTGTTCCAAGGACTCTCCAGCAATATGAAGGCTTGCCTTATCGCAGCCTACACCTTCTACGTTACTAAGCGAGAAAGAAGTCCTCGGCCGTTAAGCGTGATGTGGGCGATAGCCGGGGTGTGGGTAG
>TU2382444
GAAACATATACCTGCCCAACCCCTACCTCTGACGGTGTACTGAGGGATGGAACCATTAGTAACTGGGAATCCCCGGTGTTCTTTGCACAAAAGCGCTTCTCCATGATCCTAGCGGTAGTGAGAGTTGTCTTGTGGATGCCGATGATGACTGTGGTGCTCGTGCGTCATGCTGTGAACGAGCACAGCCCGTCCCTGGAGGCGGTGGGAACTGTGAGCTTCTTCCTGACCCTGCTGGCGCCTGCCGTCACACCGGTGTTCATGCTCTCCGAGCGCTGGATCCACCTTCCGTGCGGGTGCT
>TU2382447
ACAGTGGCAACCCCGAGGTggacaacatcaacatcaacatcccTGACACGGTGGAGGCCCACCGGCAGAACAGTCGCAGGCAGAAACAGGAGACGGGAGGCTACCGCGAGGAGATACAGCTGCTCAACGAAGCCTACAGGAAgcaggaagaggacagagaagactgatacacacacacagaggaagcaGGAAGAGGACAGAAaagactgatacacacacaggaagcaagaagaggacagagaagactgatacacacacacaggaagcaagaagaggacagagaagactgatacacacacacaggaagcaagaagaggacagagaagactgatacacacacacaggaagacaatGAGGGGACAGAGAAtactgatgcacacacacaggaagacaacGAGGGGACAGAGAAgactgatgcacacacacaggaagacaatGAGGGGACTGAGAAtactgatgcacacacacaggaagacaatGAGGGGACAGAGAAgactgatgcacacacacaggaagacaatGAGGGGACAGAGAAtactgatgcacacacacaggaagacaacGAGGGGACAGAGaatactgatacacacacacaggaagacaatGAGGGGACAGAGAAgactgatgcacacacacaggaagacaacGAGGGGACAGAGAATACTGATGCACACACAGGAAGACAACGAGGGGACAGAGAATACTGATGATCACACACAGGAAGACAATGAGGGGACAGAGAAtactgatgcacacacacaggaagacaacGAGGGGA

Function

NR:

description
probable G-protein coupled receptor 149

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965039.1 False 2730 mRNA 0.55 4 41485189 41506611
TU2382443 False 250 lncRNA 0.54 1 41485721 41485970
TU2382444 False 298 lncRNA 0.57 2 41486336 41487476
TU2382447 True 778 TUCP 0.50 2 41506359 41507173

Neighbor

gene id symbol gene type direction distance location
LOC110508050 LOC106581466 coding upstream 281494 41194800 ~ 41203695 (+)
LOC110508049 LOC106581477 coding upstream 299725 41180486 ~ 41185464 (+)
LOC110507231 LOC106581468 coding upstream 316705 41163243 ~ 41168484 (+)
LOC110508044 LOC106581474 coding upstream 488621 40992078 ~ 40996568 (+)
LOC118944684 LOC106613262 coding upstream 577876 40904514 ~ 40907313 (+)
dhx36 dhx36 coding downstream 14835 41521446 ~ 41571922 (+)
LOC118944685 NA coding downstream 272310 41778921 ~ 41781836 (+)
LOC110507284 sucnr1 coding downstream 724747 42231358 ~ 42242002 (+)
LOC110507235 LOC106581497 coding downstream 892078 42398689 ~ 42416136 (+)
LOC110508060 LOC106581495 coding downstream 978245 42484856 ~ 42492905 (+)
G2083495 NA non-coding upstream 16853 41468020 ~ 41468336 (+)
G2083479 NA non-coding upstream 34125 41450820 ~ 41451064 (+)
G2083477 NA non-coding upstream 35509 41449302 ~ 41449680 (+)
G2083471 NA non-coding upstream 38664 41445880 ~ 41446525 (+)
G2083466 NA non-coding upstream 42095 41442752 ~ 41443094 (+)
G2083524 NA non-coding downstream 6049 41512660 ~ 41512876 (+)
G2083523 NA non-coding downstream 6849 41513460 ~ 41513872 (+)
G2083531 NA non-coding downstream 12564 41519175 ~ 41519450 (+)
G2083532 NA non-coding downstream 13985 41520596 ~ 41520837 (+)
G2083535 NA non-coding downstream 39185 41545796 ~ 41547253 (+)
G2083239 NA other upstream 272417 41212204 ~ 41212772 (+)
G2083005 NA other upstream 500335 40981370 ~ 40984854 (+)
LOC110508042 LOC106613262 other upstream 639150 40840706 ~ 40847141 (+)
G2082162 NA other upstream 1527438 39957215 ~ 39957751 (+)
G2081949 NA other upstream 1551354 39931874 ~ 39933835 (+)
G2083851 NA other downstream 464648 41971259 ~ 42112036 (+)
G2084156 NA other downstream 753912 42260523 ~ 42261637 (+)
G2084659 NA other downstream 1556677 43063288 ~ 43064257 (+)
G2085037 NA other downstream 2025659 43532270 ~ 43532578 (+)
G2085122 NA other downstream 2225784 43732395 ~ 43733894 (+)
G2083517 NA non-coding downstream 3999 41491475 ~ 41491730 (+)
G2083518 NA non-coding downstream 5385 41492861 ~ 41493149 (+)
LOC110507232 LOC106593204 other downstream 18883 41485189 ~ 41507173 (+)

Expression


Co-expression Network