nars2 (nars2)


Basic Information

Item Value
gene id nars2
gene name nars2
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 48401253 ~ 48458439 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965512.1
ACCCAatagaagaagacgaagaagaaggaGCACCAATAGCCAGAGACCCAAACGGGAAGTGATATTCAACCAGGATGAACGGGACAACGTGAATGTCAACTAGTGTTTTATAAACTGAATTTAACCGTCATAATGAAGAAATCGTCTACCTCTTTTGTATTTTAGTAATTGTAGCTCCATATTGCATAATATAGCGTCTGTAACTAAACTATTTATTTGTTCAACGTCTAAATTTCGAGGCATATAGTAACAATGTTGCCGGCTAATAGGTTGTGGTTGTCTGAAGCAGCTCTTGGAATGTTGCAAAGCCTTCGATATTACTGCCAGGAGACACCCAGAAAGCTCCGAATATGCGAGGCAATCTCAAATTTAGAAGTGGGAACAAAAATCAAAGTGCAGGGCTGGGTTCGCTCTGTGAGACCCCAGAAGGAGAATCTGTTCCTCCATGTGAATGACGGGAGCTCCCTTCAGTCTCTACAGGTAGTGGCCAGCTCAGAGCTCAACCACAGACTGCTGACGTTTGGGAGTGCTGTGGAGATCTCAGGAAGCCTGGTCACGAGTCCCAGCCGCAAGCAGGACGTGGAACTGCAGGCTGACCAGATAGATGTGGTTGGAGAATGTAACCCTGTGGACTTCCCCTTTAAGATCAAGGAGAAACATGGTCTGGAATACATCCGTCAGTTTCCCCACCTGAGGTGTAAAACCAACGCCTTCAGTTCCCTGCTGAGAATACGCAGCGAAGCCACCGCTGCTATACAGCAATATTTCAAGgagAAGGGCTTTATTCAGGTCCACACCCCAGTCCTCACCTCTAATGACTGTGAAGGGGCAGGAGAGCTCTTCCAGGTTGAGCCTGCAGGTCAGGAGAAGAACCAGGATGAGGAAGGGCACCAACACTTCTTCTCTGTCCCAGCGTACCTGACTGTCTCTGGGCAGCTGCATCTGGAGGTCATGGCTGGGGCGTTTCCTGGAGTGTACGCTTTTGGACCAACGTTCCGGGCAGAGAACTCTCAGAGCAGACGTCACCTGGCTGAATTCTACATGGTGGAGGCAGAGATCTCCTTCACACAGTCACTCGAGGATCTAATGAAGGTGATGGAAGACTTGTTCAGGTCTACAACAGAACATCTCCTATCTCAGTGTCCTGAAGATGTGGCTTTATATCACAAACATGTGTCACCTGGATATAGGGACTATGTGGATCTAATGATGAAGAAGAGGTTtaatgtGATAACCTACACAGAAGCCATAAACATCCTCAACAGCAGCTCCAAGAAATTTGCTTTCAAAACAGATTGGGGCTCTGACTTGCAGACAGAGCATGAGAAGTACCTGGTGAAACATTGTGGCGATGTTCCTCTCTTCGTCACTGATTATCCCTATGCCCTGAAGCCCTTCTACACACGAGACAACCAGGACCAGCCTCTACACACTGCAGCAGCAGTAGACCTATTGGTCCCCGGAGTAGGAGAGATGTGTGGAGgttctctgagagaggagagactggaccTACTGAAGTCACGTCTAGCACAGGCTGGTTTGGATGAGACATACGGATGGTATTTGGATCTGAGGCGGTTTGGTTCTGTCCCTCACGGTGGGTTTGGTATGGGCTTTGAGCGCTACCTGCAGTGTGTTTTGGGGGTCGACAACATCAAAGACGTTATTCCATTCCCCAGATACTCCCGCTCTTGCCTTCTGTaaactatacactgagtataccaaacattaagaacaccttactaatattgagttgcacgccCCCCcgtttgccttcagaacagcctcaattcattggggcatggactctacaaggtctttaaagcgttccacagagatgttggcccatgttgactccaattctttGTACTGTTGtctagctggatgtcctttgggtggtggaccattcgggttacacacaggaaactgttgagtgtgtaaaacccagcagcgttgcagttcttgacacaaaccggtgcacctggcacctactaccatacccccgtttaaaggcacttaaatatatcttgtcttgcccattcatcctctgaatagcacacagacacaatccatgtctcagttgtctcaaggcaaaaaaaatccttctttaacccgactcctccccttcatctacactgattggagtggatttaacaggtgacatcaataagggatcatatcctggattcacctggtctgtctgtcatggaaaaagcaggtgttcctaatgttttgaccACTCAATGGATGTGTCACTATGGTCAGATGATTCTTTTTGTAAAGATGTCACTGTTTTTTGATTTATAAAATGTTAAAATGATCAAA
>TU2389600
CAGACTGCTGACGTTTGGGAGTGCTGTGGAGATCTCAGGAAGCCTGGTCACGAGTCCCAGCCGCAAGCAGGACGTGGAACTGCAGGCTGACCAGATAGATGTGGTTGGAGAATGTAACCCTGTGGACTTCCCCTTTAAGATCAAGGAGAAACATGGTCTGGAATACATCCGTCAGTTTCCCCACCTGAGGTGTAAAACCAACGCCTTCAGTTCCCTGCTGAGAATACGCAGCGAAGCCACCGCTGCTATACAGCAATATTTCAAGGTGAGATGAGACCAATGTTAGACCAGTAGACTAGAATGTCAATCAAAtggatttataaagcccttctaaaaccccaaacagcaagc

Function

symbol description
nars2 Predicted to enable ATP binding activity; asparagine-tRNA ligase activity; and nucleic acid binding activity. Predicted to act upstream of or within asparaginyl-tRNA aminoacylation. Is expressed in female organism. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 94 and combined oxidative phosphorylation deficiency 24. Orthologous to human NARS2 (asparaginyl-tRNA synthetase 2, mitochondrial).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965512.1 False 2325 mRNA 0.47 14 48401253 48458439
TU2389600 True 351 lncRNA 0.49 2 48403436 48404475

Neighbor

gene id symbol gene type direction distance location
tenm4 tenm4 coding upstream 82168 47640597 ~ 48319085 (+)
LOC118944690 NA coding upstream 918219 47482390 ~ 47483034 (+)
LOC110513068 fam181b coding upstream 1324532 47074530 ~ 47076721 (+)
prcp prcp coding upstream 1344332 47020501 ~ 47056921 (+)
rab30 rab30 coding upstream 1397849 46978103 ~ 47003404 (+)
gab2 gab2 coding downstream 2010 48460449 ~ 48624448 (+)
zmp:0000001236 LOC106581583 coding downstream 174933 48633372 ~ 48774681 (+)
trpc6b LOC106581586 coding downstream 631444 49089883 ~ 49186113 (+)
pgr LOC100846969 coding downstream 743009 49201448 ~ 49266635 (+)
LOC118944717 NA coding downstream 864574 49323013 ~ 49323866 (+)
G2089106 NA non-coding upstream 15899 48383952 ~ 48385354 (+)
G2089096 NA non-coding upstream 42242 48358662 ~ 48359011 (+)
G2089081 NA non-coding upstream 83751 48317256 ~ 48317502 (+)
G2089046 NA non-coding upstream 163205 48237198 ~ 48238048 (+)
G2089045 NA non-coding upstream 166251 48233043 ~ 48235002 (+)
G2089140 NA non-coding downstream 11291 48469730 ~ 48470815 (+)
G2089143 NA non-coding downstream 18671 48477110 ~ 48477900 (+)
G2089144 NA non-coding downstream 20099 48478538 ~ 48479901 (+)
G2089147 NA non-coding downstream 29286 48487725 ~ 48488801 (+)
G2089153 NA non-coding downstream 35496 48493935 ~ 48496506 (+)
G2089020 NA other upstream 209891 48188209 ~ 48191362 (+)
G2088870 NA other upstream 536424 47854106 ~ 47864829 (+)
G2088732 NA other upstream 863308 47532422 ~ 47537945 (+)
G2088729 NA other upstream 872705 47525440 ~ 47528548 (+)
G2089906 NA other downstream 468536 48926975 ~ 48927292 (+)
G2089935 NA other downstream 599566 49058005 ~ 49058895 (+)
G2090091 LOC106581584 other downstream 854304 49312743 ~ 49316226 (+)
G2090103 NA other downstream 875008 49333447 ~ 49334183 (+)
G2089112 NA non-coding downstream 2342 48406817 ~ 48407049 (+)
G2089124 NA other downstream 28003 48432478 ~ 48455486 (+)

Expression


Co-expression Network