G2082172


Basic Information

Item Value
gene id G2082172
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 39986603 ~ 39987111 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2380845
CTGGTCAAGGAGACACGGTTGAGGAGACATGACCCAGGAGACATGACCAAGGAGACACGGTTGAGGAGACATGATCAAGGAGACACGGTTGAGGAGACACGGTTGAGGAGACATGATCAAGGAGACACGGTTGAGGAGACATGACCAAGGAGACACGGTTGAGGAGACATGACCAAGGAGACACGGTTGAGGAGACATGACCAAGGAGACACGGTTGAGGAGACATGACCAAGGAGACACGGTTGATGAGACAGACATGACCAAGGAGACACGGTTGAGGAGACATGACCAAGGAGACACGGTTGAGGAGACAGACATGACCAAGGAGACACGGTTGAGGAGACAGAAATGACCAAGGAGACACAGTTGAGGAGACATGACCAAGGAGACATGGTTGAGGAGACAGACATGACCAAGGAGACACGGTTGAGGAGACATGACCAAGGAGACACGGTTGAGGAGACATGACCAAGGAGACACGGTTGAGGAGACATGACCAAGGAGAAACG

Function

NR:

description
nephrocystin-4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2380845 True 509 lncRNA 0.52 1 39986603 39987111

Neighbor

gene id symbol gene type direction distance location
LOC110507223 LOC106613251 coding upstream 48524 39781189 ~ 39938079 (+)
LOC110507222 LOC106581437 coding upstream 285391 39694561 ~ 39701212 (+)
LOC110508028 neus coding upstream 305043 39667989 ~ 39681560 (+)
LOC118944799 NA coding upstream 946978 39039573 ~ 39039625 (+)
LOC110508002 LOC106581401 coding upstream 1358433 38619550 ~ 38628170 (+)
ssr3 LOC106581450 coding downstream 307720 40294831 ~ 40297552 (+)
LOC110508037 LOC106581457 coding downstream 674135 40661246 ~ 40670079 (+)
LOC118944712 NA coding downstream 679906 40667017 ~ 40668632 (+)
LOC110507225 LOC106581476 coding downstream 705292 40692403 ~ 40840064 (+)
LOC110508042 LOC106613262 coding downstream 853595 40840706 ~ 40847141 (+)
G2082164 NA non-coding upstream 26194 39960175 ~ 39960409 (+)
G2082163 NA non-coding upstream 27400 39958864 ~ 39959203 (+)
G2082147 NA non-coding upstream 40119 39945852 ~ 39946484 (+)
G2082145 NA non-coding upstream 40791 39945604 ~ 39945812 (+)
G2081950 NA non-coding upstream 46248 39940074 ~ 39940355 (+)
G2082178 NA non-coding downstream 9172 39996283 ~ 39996514 (+)
G2082179 NA non-coding downstream 12565 39999676 ~ 39999882 (+)
G2082183 NA non-coding downstream 17937 40005048 ~ 40005247 (+)
G2082187 NA non-coding downstream 39952 40027063 ~ 40027399 (+)
G2082296 NA non-coding downstream 119459 40106570 ~ 40111203 (+)
G2082162 NA other upstream 28852 39957215 ~ 39957751 (+)
G2081949 NA other upstream 52768 39931874 ~ 39933835 (+)
G2081884 LOC106581433 other upstream 149220 39827658 ~ 39837383 (+)
G2080014 NA other upstream 2041452 37944932 ~ 37945151 (+)
G2083005 NA other downstream 994259 40981370 ~ 40984854 (+)
G2083239 NA other downstream 1225093 41212204 ~ 41212772 (+)
LOC110507232 LOC106593204 other downstream 1519248 41485189 ~ 41507173 (+)
G2083851 NA other downstream 1984148 41971259 ~ 42112036 (+)

Expression


Co-expression Network