G2087654


Basic Information

Item Value
gene id G2087654
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 46510111 ~ 46525515 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2387735
ggagataacaggagataacaggagtcctctagctatagaatcacccctggagataacaggagagaacaggagtcctctagctatagaatcacccctggAGATaccaggagtcctctagctatagaatcacccctggagataacaggagataacaggagtcctctagctatagaatcacccctggagataacaggagataacaggagtcctctaGCTATAGattcacccctggagataacaggagtcctctagctatagaatcacccctgaagataacaggag
>TU2387740
gagataacaggagataacaggagtcctctagctatagaatcacccctggagataacaggagagaacaggagtcctctagctatagaatcacccctggAGATaccaggagtcctctagctatagaatcacccctggagataacaggagataacaggagtcctctagctatagaatcacccctggagataacaggagtccgctagttatagaatcacccctggagatatcaggagtcctctagctatacaatcacccctggagataacaggagataacaggagtcctctagctaaataatcacccctggagataacaggagtcctctagctatagaatcacccctggagataacaggagatatcaggagtcctctagctaaaTAATCAcacctggagataacaggagtcctctagttatAAGATAACCCCTGGAGATAataggagtcctctagctatagaatcacccctggagataacaggagtcctccagctatagaatcacccctggagataacaagAGTCCTCTAGTTATAGAA
>TU2387739
gataacaggagatatcaggagtcctctagctatagaatcacccctggaGATAAcaggagatatcaggagtcctctagctatagaatcacccctggagatgacaggagatatcaggagtcctctagctatagaatcaccccaggagataacaggatatatcaggagtcctctagctatagaatcacccctggagataacaggagatatcaggagtccACTAGgtatagaatcacccctggagataacaggagtcctttagttatagaatcacccctggagataacaggagtcctctagctatagaatcacccctcgAGATAACCGGAGATACCAGGAGTCCTCTAGTTATATAATCGCCACTGGAGATATCAGGTGTCCTCTAGCTATAGAtccacccctggagataacaggagtcctctagctatataATCACtccaggagataacaggagtcgtctagctatagaatcacccctggagataacaggagtcctctagttatagaatcacccctggaggtatcaggagataacaggagtcctctagctaaataatcacccctggagataacaggagtcctctagctatagaatcacccctggagataacaggagatatcaggagtcctctagctaaaTAATCAcacctggagataacaggagtcctctagttatAAGATAACCCCTGGAGATAataggagtcctctagctatagaatcacccctggagataacaggagtcctccagctatagaatcacccctggagataacaagAGTCCTCTAGTTATAGAA
>TU2387737
gataacaggagatatcaggagtcctctagctatagaatcacccctggaGATAAcaggagatatcaggagtcctctagctatagaatcacccctggagatgacaggagatatcaggagtcctctagctatagaatcaccccaggagataacaggatatatcaggagtcctctagctatagaatcacccctggagataacaggagatatcaggagtccACTAGgtatagaatcacccctggagataacaggagtcctttagttatagaatcacccctggagataacaggagtcctctagctatagaatcacccctcgAGATAACCGGAGATACCAGGAGTCCTCTAGTTATATAATCGCCACTGGAGATATCAGGTGTCCTCTAGCTATAGAtccacccctggagataacaggagtcctctagctatataATCACtccaggagataacaggagtcgtctagctatagaatcacccctggagataacaggagtcctctagttatagaatcacccctggaggtatcaggagataacaggagtcctctagctaaataatcacccctggagataacaggagtcctctagctatagaatcacccctggagataacaggagatatcaggagtcctctagctaaaTAATCAcacctggagataacaggagtcctctagttatAAGATAACCCCTGGAGATAataggagtcctctagctatagaatcacccctggagataacaggagtcctccagctatagaatcacccctggagataacaagAGTCCTCTAGTTATAGAA
>TU2387738
agataccaggagtcctctagctatagaatcacccctggagataacaggagtccgctagttatagaatcacccctggagatatcaggagtcctctagctatagaatcacccctggagataaaaggagataacaggagtcctctagctaaataatcacccctggagataacaggagtcctctagctatagaatcacccctggagataacaggagatatcaggagtcctctagctaaaTAATCAcacctggagataacaggagtcctctagttatAAGATAACCCCTGGAGATAataggagtcctctagctatagaatcacccctggagataacaggagtcctccagctatagaatcacccctggagataacaagAGTCCTCTAGTTATAGAA
>TU2387734
ataacaggagtcctcaagctatagaatcacccctggagataacaggagtcctctagctatagaatcacccctggagataacaggagtcctctagttatagaatcacccctggaggtatcaggagataacaggagtcctctagctaaataatcacccctggagataacaggagtcctctagctatagaatcacccctggagataacaggagatatcaggagtcctctagctaaaTAATCAcacctggagataacaggagtcctctagttatAAGATAACCCCTGGAGATAataggagtcctctagctatagaatcacccctggagataacaggagtcctccagctatagaatcacccctggagataacaagAGTCCTCTAGTTATAGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2387735 False 282 lncRNA 0.47 3 46510111 46525515
TU2387740 False 535 lncRNA 0.45 5 46511002 46525225
TU2387739 False 791 lncRNA 0.45 3 46515911 46525225
TU2387737 False 791 lncRNA 0.45 3 46517379 46525225
TU2387738 False 390 lncRNA 0.45 2 46517816 46525225
TU2387734 True 388 lncRNA 0.45 2 46520394 46525225

Neighbor

gene id symbol gene type direction distance location
nek3 nek3 coding upstream 98944 46375319 ~ 46411167 (+)
LOC118944693 NA coding upstream 155459 46351995 ~ 46354652 (+)
LOC110508109 LOC105029023 coding upstream 160544 46203597 ~ 46349567 (+)
foxo1a LOC106581554 coding upstream 718316 45703165 ~ 45791795 (+)
cysltr2b LOC106581558 coding downstream 47706 46573221 ~ 46576187 (+)
fndc3a LOC106581557 coding downstream 54105 46579620 ~ 46761993 (+)
LOC118944696 NA coding downstream 217481 46742996 ~ 46745025 (+)
mlnr LOC106581570 coding downstream 248897 46774412 ~ 46783031 (+)
zgc:153184 LOC106581572 coding downstream 296412 46821927 ~ 46897922 (+)
G2087592 LOC106592078 non-coding upstream 10614 46493922 ~ 46499497 (+)
G2087596 NA non-coding upstream 12166 46453058 ~ 46497945 (+)
G2087643 NA non-coding upstream 22948 46485790 ~ 46487163 (+)
G2087635 NA non-coding upstream 47760 46459958 ~ 46462351 (+)
G2087633 NA non-coding upstream 48738 46458528 ~ 46461373 (+)
G2087659 NA non-coding downstream 9993 46535508 ~ 46536128 (+)
G2087664 NA non-coding downstream 19981 46545496 ~ 46545889 (+)
G2087704 NA non-coding downstream 111105 46636620 ~ 46637423 (+)
G2087756 NA non-coding downstream 183393 46708908 ~ 46709880 (+)
G2087569 NA other upstream 186417 46323084 ~ 46323694 (+)
G2087149 NA other upstream 711518 45797099 ~ 45798593 (+)
mtus2b LOC106593344 other upstream 980172 45493223 ~ 45664305 (+)
LOC110508103 LOC106581548 other upstream 1022374 45480328 ~ 45487737 (+)
G2087865 NA other downstream 501604 47027119 ~ 47028563 (+)
prcp prcp other downstream 511527 47020501 ~ 47056921 (+)
G2088729 NA other downstream 999925 47525440 ~ 47528548 (+)
G2088732 NA other downstream 1006907 47532422 ~ 47537945 (+)
G2088870 NA other downstream 1328591 47854106 ~ 47864829 (+)

Expression


Co-expression Network