LOC110508425 (LOC106600009)


Basic Information

Item Value
gene id LOC110508425
gene name LOC106600009
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 7539189 ~ 7564681 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021588943.2
CTTGCCCATAGCTTGTCTGTCTGGAAAGCCTCCGCAAATGAAAACGTTTGGGGGATGGGGTCGACCCGGGCAGAACTCGCCCATAACTAAGCCCGCCCCGTTCGGTGGCGAAGGGCTACTACACCGAGTTTATCAAATAAACGTGATACAATGCAGCGTAGACTGTCATAAGCGTTCTCTTTCCTGCCTTGCCTTGGACGAGGAAGGCGGTGTATTCGCAGTGTTCATTTGACCAACAAGTTCATCTACGAACATCAGGCAAAATGGTGAACTTTACAGTGGACCAGATCCGTGCGATCATGGACAAGAAGTCCAACATCCGTAACATGTCTGTGATCGCTCACGTGGACCACGGCAAGTCCACGCTGACGGACTCCCTGGTGTCTAAAGCCGGGATCATTGCAGGGTCTCGCGCCGGAGAGACTCGCTTCACAGACACACGCAAAGACGAGCAGGAGCGGTGTATTACCATCAAGTCCACGGCCATCTCTATGTACTATGAGCTGGGGGAAAATGACATGGCCTTCATCAAGCAGACTAAGGATGGGCTTGGTTTCCTCATCAACCTGATCGACTCCCCGGGCCACGTGGACTTCTCCTCTGAAGTCACAGCCGCCCTCAGGGTCACAGACGGCGCACTGGTGGTGGTCGACTGTGTCTCAGgtgtgtgtgtgcagacagaGACTGTGTTGAGGCAGGCCATTGCTGAGCGCATCAAGCCGGTGCTGATGATGAACAAGATGGACCGGGCCCTGCTGGAGCTGCAGCTGGAGCCTGAGGACCTGTTCCAGACCTTCCAGCGCATCGTGGAGAACGTCAACGTCATCATTGCCACCTATGGAGAGGATGAAGCAGGACCAATGGGTGCCATTATGATTGACCCTGTGATCGGTACCGTAGGGTTTGGGTCTGGCCTCCACGGCTGGGCCTTCACCCTCAAGCAGTTTGCTGAGATGTACGTGGCCAAGTTTTCTGCTGGCAAAGACACCCAGTTGGGACCAGCAGAGAGATGTAAGAAGGTGGAGGACATGATGAAGAAGCTATGGggagagagGTTTTTTGACCCAGCCACTGGGAAGTTCAGTAAAACTGCCACTGGCCCCGATGGTAAAAAGCTTCCCCGCACCTTCTCTCAACTCGTGCTGGATCCAATCTTCAAGgtgtTCGATGCCGTCATGAACTTCAAGAAGGACGAGACGGCCAAGCTGATAGAGAAGCTGGACATCAAGCTGGACACTGAGGACAAGGAGAAGGAGGGCAAGCCCCTACTGAAGGCAGTGATGCGTCGCTGGCTCCCAGCCGGAGAGGCTCTGCTCCAGATGATCACCATCCACCTGCCCTCCCCCGTCACTGCCCAGAAGTACCGCTGTGAGCTGCTTTATGAGGGTCCAGGAGACGACGAGGCCGCCATGGgTATCAAGAACTGCGACCCCAAGGCACCTCTGATGATGTACATCTCTAAGATGGTGCCCACAACAGATAAAGGTCGCTTCTACGCCTTCGGCCGTGTCTTCTCTGGCTGTGTGTCCACCGGTCTGAAGGTGCGCATCATGGGACCAAACTTCACCCCCGGGAAGAAGGAAGACCTCTACATCAAACCCATCCAGagGACCATTCTGATGATGGGGCGCTacgtagagcccattgaggatgtaCCATGTGGAAACATTGTTGGTCTGGTTGGAGTAGACCAGTATCTGATTAAGACTGGGACCATCACCACCTTTGAACAGGCCCACAACATGCGTGTGATGAAGTTCAGCGTTAGCCCCGTGGTGAGAGTGGCTGTGGAGGCCAAGAACCCAGCTGACCTGCCCAAGCTGGTGGAGGGCCTGAAGCGTCTGGCCAAGTCTGACCCCATGGTGCAGTGTATCATCGAGGAGTCTGGCGAGCACATCATTGCCGGGGCCGGAGAGCTCCATCTGGAGATCTGTCTCAAGGATCTGGAGGAGGACCACGCCGGCATTCCACTGAagAAATCAGACCCGGTGGTGTCCTACAGGGAGACTGTGTCTGAGGAGTCTGAAGTGATGTGCCTGTCCAAGTCCCCCAACAAGCACAACCGTCTGTACATGCGTGCCAAACCATTCCCCGACGGCCTGGCCGAGGACATCGAGAAGGGCGACGTCAGCCCCCGGCAGGAGCTCAAGATCCGTGCCCGCTTCTTGGCTGACAAGTACGAGTGGGATGTGTCGGAGGCCCGTAAAATCTGGTGCTTTGGTCCCGACGGCACCGGGCCCAACCTGCTGATGGACGTGACCAAGGGAGTCCAGTACCTGAACGAGATCAAGGACAGCGTGGTGGCCGGCTTCCAGTGGGCCGTCAAGGAGGGTGTGCTGTGCGAGGAGAACATGCGTGCGATCCGCTTTGACATCCATGACGTGACCCTGCACACAGATGCCATTCACCGCGGTGGCGGACAGATCATCCCTACCGCCCGCAGAGTGCTGTATGCTTGCCAGCTCACTGCACAGCCAAGACTCATGGAGCCTGTCTACCTGGTCGagatccagTGCCCAGAGCAGGTAGTGGGCGGGATCTACGGCGTGCTGAACAGGAAGCGAGGTCACGTGTTCGAGGAGTCCCAGGTGATGGGCACGCCCATGTTCATCGTCAAGGCCTACCTTCCTGTCAATGAGTCATTCGgTTTCACAGCTGACCTGCGCTCCAACACGGGTGGCCAGGCCTTCCCCCAGTGTGTGTTTGACCACTGGCAGATCCTCCAGGGGGACCCCCAGGACCCTACCACCAAGACTGCCATTGTGGTGGCAGAGACCAGAAAACGCAAGGGACTCAAAGAGGGCATCCCTGCCCTAGACAACTACCTGGACAAATTGTAAATGCTAAGTCTGAAtcccaaatggacccctagacaCAACAACTCCCTCTAGGCACTACAATTTAAGTTGTTGGCTAGGCATAAGCAATATGGGGAAGATTTcacctagcctatcagagggTAATGTGGATCTGTAAGTATATTGCTTATGGTATCTGAACCTTTCAGATCTACAGTGCCTAATGGACTAGGGGTTGGTTTGGAATTTTGTAGATGTCTGACCATTCCTCCCCCATTCCTTCTATTCCTCCACTGTACGAGTGAGGGATGCAACTGTACAGTGCGCAGTGGCGCTTGCCTAAATGGAAACCTGGTGAAAATAAACCAAGGATACAAATGTGTAAATCATAATAAAGATTAATAGAAATTGTA
>XR_005040248.1
CTTGCCCATAGCTTGTCTGTCTGGAAAGCCTCCGCAAATGAAAACGTTTGGGGGATGGGGTCGACCCGGGCAGAACTCGCCCATAACTAAGCCCGCCCCGTTCGGTGGCGAAGGGCTACTACACCGAGTTTATCAAATAAACGTGATACAATGCAGCGTAGACTGTCATAAGCGTTCTCTTTCCTGCCTTGCCTTGGACGAGGAAGGCGGTGTATTCGCAGTGTTCATTTGACCAACAAGTTCATCTACGAACATCAGGCAAAATGGTGAACTTTACAGTGGACCAGATCCGTGCGATCATGGACAAGAAGTCCAACATCCGTAACATGTCTGTGATCGCTCACGTGGACCACGGCAAGTCCACGCTGACGGACTCCCTGGTGTCTAAAGCCGGGATCATTGCAGGGTCTCGCGCCGGAGAGACTCGCTTCACAGACACACGCAAAGACGAGCAGGAGCGGTGTATTACCATCAAGTCCACGGCCATCTCTATGTACTATGAGCTGGGGGAAAATGACATGGCCTTCATCAAGCAGACTAAGGATGGGCTTGGTTTCCTCATCAACCTGATCGACTCCCCGGGCCACGTGGACTTCTCCTCTGAAGTCACAGCCGCCCTCAGGGTCACAGACGGCGCACTGGTGGTGGTCGACTGTGTCTCAGgtgtgtgtgtgcagacagaGACTGTGTTGAGGCAGGCCATTGCTGAGCGCATCAAGCCGGTGCTGATGATGAACAAGATGGACCGGGCCCTGCTGGAGCTGCAGCTGGAGCCTGAGGACCTGTTCCAGACCTTCCAGCGCATCGTGGAGAACGTCAACGTCATCATTGCCACCTATGGAGAGGATGAAGCAGGACCAATGGGTGCCATTATGATTGACCCTGTGATCGGTACCGTAGGGTTTGGGTCTGGCCTCCACGGCTGGGCCTTCACCCTCAAGCAGTTTGCTGAGATGTACGTGGCCAAGTTTTCTGCTGGCAAAGACACCCAGTTGGGACCAGCAGAGAGATGTAAGAAGGTGGAGGACATGATGAAGAAGCTATGGggagagagGTTTTTTGACCCAGCCACTGGGAAGTTCAGTAAAACTGCCACTGGCCCCGATGGTAAAAAGCTTCCCCGCACCTTCTCTCAACTCGTGCTGGATCCAATCTTCAAGgtgtTCGATGCCGTCATGAACTTCAAGAAGGACGAGACGGCCAAGCTGATAGAGAAGCTGGACATCAAGCTGGACACTGAGGACAAGGAGAAGGAGGGCAAGCCCCTACTGAAGGCAGTGATGCGTCGCTGGCTCCCAGCCGGAGAGGCTCTGCTCCAGATGATCACCATCCACCTGCCCTCCCCCGTCACTGCCCAGAAGTACCGCTGTGAGCTGCTTTATGAGGGTCCAGGAGACGACGAGGCCGCCATGGgTATCAAGAACTGCGACCCCAAGGCACCTCTGATGATGTACATCTCTAAGATGGTGCCCACAACAGATAAAGGTCGCTTCTACGCCTTCGGCCGTGTCTTCTCTGGCTGTGTGTCCACCGGTCTGAAGGTGCGCATCATGGGACCAAACTTCACCCCCGGGAAGAAGGAAGACCTCTACATCAAACCCATCCAGagGACCATTCTGATGATGGGGCGCTacgtagagcccattgaggatgtaCCATGTGGAAACATTGTTGGTCTGGTTGGAGTAGACCAGTATCTGATTAAGACTGGGACCATCACCACCTTTGAACAGGCCCACAACATGCGTGTGATGAAGTTCAGCGTTAGCCCCGTGGTGAGAGTGGCTGTGGAGGCCAAGAACCCAGCTGACCTGCCCAAGCTGGTGGAGGGCCTGAAGCGTCTGGCCAAGTCTGACCCCATGGTGCAGTGTATCATCGAGGAGTCTGGCGAGCACATCATTGCCGGGGCCGGAGAGCTCCATCTGGAGATCTGTCTCAAGGATCTGGAGGAGGACCACGCCGGCATTCCACTGAagAAATCAGACCCGGTGGTGTCCTACAGGGAGACTGTGTCTGAGGAGTCTGAAGTGATGTGCCTGTCCAAGTCCCCCAACAAGCACAACCGTCTGTACATGCGTGCCAAACCATTCCCCGACGGCCTGGCCGAGGACATCGAGAAGGGCGACGTCAGCCCCCGGCAGGAGCTCAAGATCCGTGCCCGCTTCTTGGCTGACAAGTACGAGTGGGATGTGTCGGAGGCCCGTAAAATCTGGTGCTTTGGTCCCGACGGCACCGGGCCCAACCTGCTGATGGACGTGACCAAGGGAGTCCAGTACCTGAACGAGATCAAGGACAGCGTGGTGGCCGGCTTCCAGTGGGCCGTCAAGGAGGGTGTGCTGTGCGAGGAGAACATGCGTGCGATCCGCTTTGACATCCATGACGTGACCCTGCACACAGATGCCATTCACCGCGGTGGCGGACAGATCATCCCTACCGCCCGCAGAGTGCTGTATGCTTGCCAGCTCACTGCACAGCCAAGACTCATGGAGCCTGTCTACCTGGTCGagatccagTGCCCAGAGCAGGTAGTGGGCGGGATCTACGGCGTGCTGAACAGGAAGCGAGGTCACGTGTTCGAGGAGTCCCAGGTGATGGGCACGCCCATGTTCATCGTCAAGGCCTACCTTCCTGTCAATGAGTCATTCGgTTTCACAGCTGACCTGCGCTCCAACACGGGTGGCCAGGCCTTCCCCCAGTGTGTGTTTGACCACTGGCAGATCCTCCAGGGGGACCCCCAGGACCCTACCACCAAGACTGCCATTGTGGTGGCAGAGACCAGAAAACGCAAGGGACTCAAAGAGGGCATCCCTGCCCTAGACAACTACCTGGACAAATTGTAAATGCTAAGTCTGAAtcccaaatggacccctagacaCAACAACTCCCTCTAGGCACTACAATTTAAGTTGTTGcctatcagagggTAATGTGGATCTGTAAGTATATTGCTTATGGTATCTGAACCTTTCAGATCTACAGTGCCTAATGGACTAGGGGTTGGTTTGGAATTTTGTAGATGTCTGACCATTCCTCCCCCATTCCTTCTATTCCTCCACTGTACGAGTGAGGGATGCAACTGTACAGTGCGCAGTGGCGCTTGCCTAAATGGAAACCTGGTGAAAATAAACCAAGGATACAAATGTGTAAATCATAATAAAGATTAATAGAAATTGTA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K03234 EEF2; elongation factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021588943.2 False 3211 mRNA 0.55 14 7539189 7564681
XR_005040248.1 True 3175 mRNA 0.55 15 7539189 7564681

Neighbor

gene id symbol gene type direction distance location
LOC110508422 LOC106600004 coding downstream 34445 7411764 ~ 7504744 (-)
LOC110509205 LOC106599992 coding downstream 286140 7226307 ~ 7253057 (-)
LOC110508412 NA coding downstream 486816 7039094 ~ 7052373 (-)
LOC110508409 LOC106599985 coding downstream 522717 6985437 ~ 7016472 (-)
LOC110508405 LOC106599977 coding downstream 712571 6817234 ~ 6826618 (-)
sirt6 sirt6 coding upstream 44553 7609234 ~ 7619567 (-)
ub2r1 ub2r1 coding upstream 63231 7627912 ~ 7629740 (-)
stap2a LOC106600019 coding upstream 85615 7650296 ~ 7654755 (-)
LOC110508430 LOC106600020 coding upstream 90364 7655045 ~ 7682228 (-)
LOC110508432 LOC106600026 coding upstream 123964 7688645 ~ 7705872 (-)
G2100663 NA non-coding downstream 2262 7535321 ~ 7536927 (-)
G2100649 NA non-coding downstream 21275 7517699 ~ 7517914 (-)
G2100643 NA non-coding downstream 25518 7513366 ~ 7513671 (-)
G2100642 NA non-coding downstream 26236 7512696 ~ 7512953 (-)
G2100580 NA non-coding downstream 117468 7421438 ~ 7421721 (-)
G2100820 NA non-coding upstream 264629 7829310 ~ 7829521 (-)
G2100821 NA non-coding upstream 264963 7829644 ~ 7829867 (-)
G2100822 NA non-coding upstream 265600 7830281 ~ 7830565 (-)
G2100832 NA non-coding upstream 273455 7838136 ~ 7838393 (-)
G2100109 NA other downstream 332701 7203606 ~ 7206488 (-)
G2099318 NA other downstream 1100093 6426170 ~ 6439096 (-)
G2098997 NA other downstream 1300576 6238169 ~ 6238613 (-)
G2098996 NA other downstream 1301095 6237433 ~ 6238094 (-)
G2098793 NA other downstream 1539695 5995825 ~ 5999494 (-)
G2100707 NA other upstream 28613 7593294 ~ 7593815 (-)
LOC110508434 LOC106600027 other upstream 203735 7767544 ~ 7837267 (-)
LOC110508443 LOC106600051 other upstream 428730 7993411 ~ 8044009 (-)
G2101243 NA other upstream 593538 8158219 ~ 8158518 (-)
G2101464 NA other upstream 673463 8238144 ~ 8239853 (-)

Expression


Co-expression Network