RNA id: XR_005040248.1


Basic Information

Item Value
RNA id XR_005040248.1
length 3175
RNA type mRNA
GC content 0.55
exon number 15
gene id LOC110508425
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 7539189 ~ 7564681 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTGCCCATAGCTTGTCTGTCTGGAAAGCCTCCGCAAATGAAAACGTTTGGGGGATGGGGTCGACCCGGGCAGAACTCGCCCATAACTAAGCCCGCCCCGTTCGGTGGCGAAGGGCTACTACACCGAGTTTATCAAATAAACGTGATACAATGCAGCGTAGACTGTCATAAGCGTTCTCTTTCCTGCCTTGCCTTGGACGAGGAAGGCGGTGTATTCGCAGTGTTCATTTGACCAACAAGTTCATCTACGAACATCAGGCAAAATGGTGAACTTTACAGTGGACCAGATCCGTGCGATCATGGACAAGAAGTCCAACATCCGTAACATGTCTGTGATCGCTCACGTGGACCACGGCAAGTCCACGCTGACGGACTCCCTGGTGTCTAAAGCCGGGATCATTGCAGGGTCTCGCGCCGGAGAGACTCGCTTCACAGACACACGCAAAGACGAGCAGGAGCGGTGTATTACCATCAAGTCCACGGCCATCTCTATGTACTATGAGCTGGGGGAAAATGACATGGCCTTCATCAAGCAGACTAAGGATGGGCTTGGTTTCCTCATCAACCTGATCGACTCCCCGGGCCACGTGGACTTCTCCTCTGAAGTCACAGCCGCCCTCAGGGTCACAGACGGCGCACTGGTGGTGGTCGACTGTGTCTCAGgtgtgtgtgtgcagacagaGACTGTGTTGAGGCAGGCCATTGCTGAGCGCATCAAGCCGGTGCTGATGATGAACAAGATGGACCGGGCCCTGCTGGAGCTGCAGCTGGAGCCTGAGGACCTGTTCCAGACCTTCCAGCGCATCGTGGAGAACGTCAACGTCATCATTGCCACCTATGGAGAGGATGAAGCAGGACCAATGGGTGCCATTATGATTGACCCTGTGATCGGTACCGTAGGGTTTGGGTCTGGCCTCCACGGCTGGGCCTTCACCCTCAAGCAGTTTGCTGAGATGTACGTGGCCAAGTTTTCTGCTGGCAAAGACACCCAGTTGGGACCAGCAGAGAGATGTAAGAAGGTGGAGGACATGATGAAGAAGCTATGGggagagagGTTTTTTGACCCAGCCACTGGGAAGTTCAGTAAAACTGCCACTGGCCCCGATGGTAAAAAGCTTCCCCGCACCTTCTCTCAACTCGTGCTGGATCCAATCTTCAAGgtgtTCGATGCCGTCATGAACTTCAAGAAGGACGAGACGGCCAAGCTGATAGAGAAGCTGGACATCAAGCTGGACACTGAGGACAAGGAGAAGGAGGGCAAGCCCCTACTGAAGGCAGTGATGCGTCGCTGGCTCCCAGCCGGAGAGGCTCTGCTCCAGATGATCACCATCCACCTGCCCTCCCCCGTCACTGCCCAGAAGTACCGCTGTGAGCTGCTTTATGAGGGTCCAGGAGACGACGAGGCCGCCATGGgTATCAAGAACTGCGACCCCAAGGCACCTCTGATGATGTACATCTCTAAGATGGTGCCCACAACAGATAAAGGTCGCTTCTACGCCTTCGGCCGTGTCTTCTCTGGCTGTGTGTCCACCGGTCTGAAGGTGCGCATCATGGGACCAAACTTCACCCCCGGGAAGAAGGAAGACCTCTACATCAAACCCATCCAGagGACCATTCTGATGATGGGGCGCTacgtagagcccattgaggatgtaCCATGTGGAAACATTGTTGGTCTGGTTGGAGTAGACCAGTATCTGATTAAGACTGGGACCATCACCACCTTTGAACAGGCCCACAACATGCGTGTGATGAAGTTCAGCGTTAGCCCCGTGGTGAGAGTGGCTGTGGAGGCCAAGAACCCAGCTGACCTGCCCAAGCTGGTGGAGGGCCTGAAGCGTCTGGCCAAGTCTGACCCCATGGTGCAGTGTATCATCGAGGAGTCTGGCGAGCACATCATTGCCGGGGCCGGAGAGCTCCATCTGGAGATCTGTCTCAAGGATCTGGAGGAGGACCACGCCGGCATTCCACTGAagAAATCAGACCCGGTGGTGTCCTACAGGGAGACTGTGTCTGAGGAGTCTGAAGTGATGTGCCTGTCCAAGTCCCCCAACAAGCACAACCGTCTGTACATGCGTGCCAAACCATTCCCCGACGGCCTGGCCGAGGACATCGAGAAGGGCGACGTCAGCCCCCGGCAGGAGCTCAAGATCCGTGCCCGCTTCTTGGCTGACAAGTACGAGTGGGATGTGTCGGAGGCCCGTAAAATCTGGTGCTTTGGTCCCGACGGCACCGGGCCCAACCTGCTGATGGACGTGACCAAGGGAGTCCAGTACCTGAACGAGATCAAGGACAGCGTGGTGGCCGGCTTCCAGTGGGCCGTCAAGGAGGGTGTGCTGTGCGAGGAGAACATGCGTGCGATCCGCTTTGACATCCATGACGTGACCCTGCACACAGATGCCATTCACCGCGGTGGCGGACAGATCATCCCTACCGCCCGCAGAGTGCTGTATGCTTGCCAGCTCACTGCACAGCCAAGACTCATGGAGCCTGTCTACCTGGTCGagatccagTGCCCAGAGCAGGTAGTGGGCGGGATCTACGGCGTGCTGAACAGGAAGCGAGGTCACGTGTTCGAGGAGTCCCAGGTGATGGGCACGCCCATGTTCATCGTCAAGGCCTACCTTCCTGTCAATGAGTCATTCGgTTTCACAGCTGACCTGCGCTCCAACACGGGTGGCCAGGCCTTCCCCCAGTGTGTGTTTGACCACTGGCAGATCCTCCAGGGGGACCCCCAGGACCCTACCACCAAGACTGCCATTGTGGTGGCAGAGACCAGAAAACGCAAGGGACTCAAAGAGGGCATCCCTGCCCTAGACAACTACCTGGACAAATTGTAAATGCTAAGTCTGAAtcccaaatggacccctagacaCAACAACTCCCTCTAGGCACTACAATTTAAGTTGTTGcctatcagagggTAATGTGGATCTGTAAGTATATTGCTTATGGTATCTGAACCTTTCAGATCTACAGTGCCTAATGGACTAGGGGTTGGTTTGGAATTTTGTAGATGTCTGACCATTCCTCCCCCATTCCTTCTATTCCTCCACTGTACGAGTGAGGGATGCAACTGTACAGTGCGCAGTGGCGCTTGCCTAAATGGAAACCTGGTGAAAATAAACCAAGGATACAAATGTGTAAATCATAATAAAGATTAATAGAAATTGTA

Function

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K03234 EEF2; elongation factor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2402791 lncRNA downstream 2262 7535321 ~ 7536927 (-) True G2100663
TU2402775 lncRNA downstream 21275 7517699 ~ 7517914 (-) True G2100649
TU2402766 lncRNA downstream 25518 7513366 ~ 7513671 (-) True G2100643
TU2402765 lncRNA downstream 26236 7512696 ~ 7512953 (-) True G2100642
TU2402701 lncRNA downstream 117468 7421438 ~ 7421721 (-) True G2100580
TU2402837 lncRNA upstream 90404 7655085 ~ 7657069 (-) True LOC110508430
TU2402956 lncRNA upstream 264629 7829310 ~ 7829521 (-) True G2100820
TU2402957 lncRNA upstream 264963 7829644 ~ 7829867 (-) True G2100821
TU2402958 lncRNA upstream 265600 7830281 ~ 7830565 (-) True G2100822
TU2402968 lncRNA upstream 273455 7838136 ~ 7838393 (-) True G2100832
XM_036967078.1 mRNA downstream 34445 7411764 ~ 7504744 (-) False LOC110508422
XM_021590186.2 mRNA downstream 286140 7226307 ~ 7253049 (-) False LOC110509205
XR_002471307.2 mRNA downstream 486816 7039094 ~ 7052373 (-) False LOC110508412
XR_005040218.1 mRNA downstream 486816 7041046 ~ 7052373 (-) True LOC110508412
XM_021588926.2 mRNA downstream 522717 6985740 ~ 7016472 (-) False LOC110508409
XM_036966654.1 mRNA upstream 44553 7609234 ~ 7618301 (-) False sirt6
XM_021588945.2 mRNA upstream 44553 7609234 ~ 7619567 (-) True sirt6
NM_001165129.1 mRNA upstream 63231 7627912 ~ 7629740 (-) True ub2r1
XM_021588947.2 mRNA upstream 85615 7650296 ~ 7654755 (-) True stap2a
XM_036966986.1 mRNA upstream 90364 7655045 ~ 7682213 (-) False LOC110508430
TU2402165 other downstream 332701 7203606 ~ 7206488 (-) True G2100109
TU2401301 other downstream 1100093 6426170 ~ 6439096 (-) True G2099318
TU2400957 other downstream 1300576 6238169 ~ 6238613 (-) True G2098997
TU2400956 other downstream 1301095 6237433 ~ 6238094 (-) True G2098996
TU2400729 other downstream 1540867 5996116 ~ 5998322 (-) True G2098793
TU2402839 other upstream 28613 7593294 ~ 7593815 (-) True G2100707
TU2402916 other upstream 203735 7768416 ~ 7771183 (-) False LOC110508434
TU2402917 other upstream 203735 7768416 ~ 7771183 (-) True LOC110508434
TU2403222 other upstream 428730 7993411 ~ 7998865 (-) True LOC110508443
TU2403426 other upstream 593538 8158219 ~ 8158518 (-) True G2101243

Expression Profile