RNA id: TU2402957


Basic Information

Item Value
RNA id TU2402957
length 224
lncRNA type intronic
GC content 0.32
exon number 1
gene id G2100821
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 7829644 ~ 7829867 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTagattgaagaaaaaaaatatttaattcaatttagaataaggctttaacgtggAAAAGGTCAATAGGTGAATACTTtaatgaatgcactgtatgcactGACAATGAAAGACAAAAACACCGGCAAATTATCTTCAAGtgatttacatttttaaaatctgtTTTAAAGTATTCCCACACGTAATAGAGAGATACACACGCTAAGTATACCAACCATTAGGACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2402956 lncRNA downstream 123 7829310 ~ 7829521 (-) True G2100820
TU2402837 lncRNA downstream 172575 7655085 ~ 7657069 (-) True LOC110508430
TU2402807 lncRNA downstream 271777 7557602 ~ 7557867 (-) True G2100679
TU2402791 lncRNA downstream 292717 7535321 ~ 7536927 (-) True G2100663
TU2402775 lncRNA downstream 311730 7517699 ~ 7517914 (-) True G2100649
TU2402958 lncRNA upstream 414 7830281 ~ 7830565 (-) True G2100822
TU2402968 lncRNA upstream 8269 7838136 ~ 7838393 (-) True G2100832
TU2402981 lncRNA upstream 23677 7853544 ~ 7856941 (-) True G2100844
TU2402988 lncRNA upstream 27364 7857231 ~ 7857462 (-) True G2100851
TU2403089 lncRNA upstream 94946 7924813 ~ 7935962 (-) True G2100940
XM_021588949.2 mRNA downstream 123772 7688645 ~ 7705872 (-) True LOC110508432
XM_036966985.1 mRNA downstream 147416 7655045 ~ 7682228 (-) False LOC110508430
XM_021588948.2 mRNA downstream 147420 7655045 ~ 7682224 (-) False LOC110508430
XM_036966984.1 mRNA downstream 147420 7655045 ~ 7682224 (-) False LOC110508430
XM_036966986.1 mRNA downstream 147431 7655045 ~ 7682213 (-) False LOC110508430
XM_036966910.1 mRNA upstream 32455 7862322 ~ 7878366 (-) True LOC110508436
XM_036965957.1 mRNA upstream 54025 7883892 ~ 7980217 (-) False LOC110508438
XM_036965958.1 mRNA upstream 54025 7883892 ~ 7980217 (-) False LOC110508438
XM_036965959.1 mRNA upstream 54025 7883892 ~ 7980217 (-) False LOC110508438
XM_036965956.1 mRNA upstream 54025 7883892 ~ 7980218 (-) True LOC110508438
TU2402916 other downstream 58461 7768416 ~ 7771183 (-) False LOC110508434
TU2402917 other downstream 58461 7768416 ~ 7771183 (-) True LOC110508434
TU2402839 other downstream 235829 7593294 ~ 7593815 (-) True G2100707
TU2402165 other downstream 623156 7203606 ~ 7206488 (-) True G2100109
TU2401301 other downstream 1390548 6426170 ~ 6439096 (-) True G2099318
TU2403222 other upstream 163544 7993411 ~ 7998865 (-) True LOC110508443
TU2403426 other upstream 328352 8158219 ~ 8158518 (-) True G2101243
TU2403666 other upstream 408277 8238144 ~ 8239853 (-) True G2101464
TU2403860 other upstream 651865 8481732 ~ 8482413 (-) True LOC118936616
TU2404356 other upstream 1146985 8976852 ~ 8978099 (-) True LOC110508274

Expression Profile