RNA id: XM_036965957.1


Basic Information

Item Value
RNA id XM_036965957.1
length 7846
RNA type mRNA
GC content 0.51
exon number 32
gene id LOC110508438
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 7883892 ~ 7980218 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tGAGGAGGAAGACAGTGAGTATCAATTGACAACCAGCAGTGTCTAAAGGCGCTCGACCGGAGATGGTCCCCCCAAACACGGGCGCAGAATAGTGGTCGTGCAAGGCTTCTGAGGAGGCGAGAGGACAGCCGAGGACGCCGGCGATGCATGCGTTCACTTCCGAAAAATCTAACCTTTCAGAGGATCTCTTCTGTCAAATGGGATTATTATTTCTGTCGGGGGTTAAAGGGAAGCTGCCAGCTGCAAGTCCATGCACATTAATTTATCCGATCAAAAACAAGACGGAGCACTCACTTTCTCCATAAAGGTCCGCTGGATGGTCACACTGAGGATTCCACAGAGCAGGCCATGATGCCTCAGCCTCAGTCAGGGCTGTAGAAAACACACAGAGAGTGCCAAGCCCTGTTGAgtgaagtccccccccccccatcccccaccTCCATCCCCAGTCGCCGGAGGTACCATGGTTCCCTCCAGTCCTAGCGGAACCGTAGCCCAGTCCAGGGTGCCTCGCCCTGGGTACTGCCTCTGCCTCTACCCCCCTTTTTTGCTGCCACTGCTGCTGGTGCTCACTTCCCTGCCTAACCTCTCGGACGCCTTAGCGGCGCCCAAGTTTACCAAGATTCCCGGAGACCAGATTGGGGTGTCGGGAGGCGTGGCCTCATTTGTGTGCCAGGCGTCAGGTGACCCCAAGCCCATGGTCAACTGGAACAAGAAAGGCAAGAAGGTCAACTCCCAACGCATAGAGaCGATAGAGTTTGATGATGGAGCAGGGGCCGTGCTGAGGATCCAGCCTCTCAGGGCCCCCCGAGATGAGAATGTCTATGAGTGTGTGGCCCGCAACACTGAGGGAGAGGTGGCCACCACCGCCAAGCTAGCCATCATacgagAGGATCTGTTGCCGTTTGGTTTCCCCAGCATCGACATGGGACCGCAGCTGAAGGTGGTGGAGAGGACCAGGACGGCCACCATGCTGTGTGCTGCCAGCGGCATCCCTGACCCAGAGATCTCCTGGTTCAAAGATTTCCTACCTGTAGAACCCAGGTCCAGCCTGGGACGCATCAAACAACTACGCTCagGTGCCCTGCAGATAGAGAACAGTGAAGAGACCGACCAGGGGAAGTATGAGTGTGTGGCCACTAACTCTCAGGGCGTACGCTACTCTTCCCCAGCCAACCTGTATGTGCGAGGATCAACAGACAAATtgCGTCGCGTGCCCCCTCGTTTCTCCATCCTGCCCGCCAACCATGAGATCATGCCTGGCGGCAGCGTCAACATCACCTGTGTGGCAGTGGGCTCGCCCATGCCCTATGTCAAATGGATGCTGGGTATTGAGGACCTGACCCCGGAAGACGAGATGCCGGTGGGACGCAATGTTTTGGAGCTCAACGGAGTGAGAGAGTCGGCCAACTACACCTGCGTGGCCATGAGCAGTCTGGGGATTATAGAGGCCACCGCACAGGTGTCAGTTAAGACTCTTCCCAAGCCTCCCGGTACCCCCATCGTCACAGAGACGACCGCCACCAGCGTTACCATCACCTGGGACTCCGGTAACCCCGACCCAGTGTCCTATTACATCATCCAGTACCGGGCCAAGACCCCGGACAGCAAGTATGAGGCGGTGGACGGTATCACCACCACCAGGTACAGCATCGGAGGGCTCTACCCCAACACGGAGTACGAAGTTAGGGTGTCGGCCTTCAACAGCATCGGCCAGGGCCCCTCGTCCACCCGGGTAGAGGCCAGGACAGGGGAACAGGCCCCGGCTAGCCCCCCCAGGAACGTCCAGGCCAGGATCATCTCCCAGAACACTGTCATGGTCCGCTGGGAAGAACCGGAGGAGCCCAACGGACAGGTGAAAGGTTACCGGGTGTACTACACCATGGACCCATCTCAGCCCATGAGTCTGTGGCAGATCCATAATGTCCAGGAcagcaccatcaccaccatccaGAGCCTGGTACCCTCTGAGACATACACAGTCAGAGTACTGGCCTTCACCTCTGTGGGAGACGGACCCTTCTCTGACTCCGTCCATGTCAAAGTTCTGCCcggagTTCCAGGGCAGCCAGGGAAGTTCAAAGTGGGGAAGGTGACAGACACCAGTATACAGCTCACCTGGGAACCGTCCTACATCAAGGAGGGCATCGTCAACTACGAACTGCTCTACAAACCTGTCAAGTTTGGCAGCCTGgaGAAGTTGACATTCGGGCCCAGGGCGTCGTACACAGTGGAGGGTCTGAGGGCTAATACAGAGTACTCCTTCTCCCTGGCAGCCATTTCCAACAAAGGCATCGGAGCCTTCACCAACGAGCTGGTCCAGAGGACATCACAAGCCAATGTCCCGAGGAACTTCTCAGTGAACCTGGCGACCAAGACGAGTGTTCTGCTGACCTGGGAGTTCCCCGACAGCCCCTACCCATACCACTTTACTGTGGAGTATAATCATCAGAAGATGGAGGTGGATGCCAGGCTGAGGAAAGCAGTGATCCCCAACCTGCAGCCCGATACCGACTATGACTTCAAGATCACCTCCCCCGAGGGCAACATGGGCCGGCTGAGGCACCGCATCCTAGCCAAGACGTCTCCACTAATCGGCATCCGTCGTCCGGAGATAGACCACACCCGGGACACGGagaccaccatcaccatcattctGCCTTCACTGGAGAACCGCAGCCCTGTCAAGAACATTTATGTGGTGGTAGTTCCACTGAGGAGGGCAAGGGGGGTCATCAGGCATCTCAAGAGCCCAGACGAGATGGACCTGGAGGAGtTGTTGGACATCAGTCAAAGACAGAGGGACTCTAgacagcaaaaacaggttgaccTGCGTCGAGCCTACATCACTGCCCGCTTCACCCCTGATACCCTGCCAGCCTTCTTCACTTTGGGGGACCAGCTGGACTACGGAGGCTTTGAGAACCGCGCTCTAGAACCGGGACAGGAGTACGTGTTCTTCATCCTGGCAGAACTCAACGGCACCACAGGGAAGATGTACGGGGCCAGCCCCTACACAGACCCAGTGATAGCCCCCGACTCAGACCCCCAGCCCCTGGACGCAGGGGACGGTCTGATCTGGGTGGTGGGACCCGTCCTGGCCGTGGTCTTCATCATCTGCATCGTCATCGCCATCCTGCTCTACAAGAACAAGCCAGACAGTAAGAGGAAGGACTCTGAGCCAGGCACCAAGAGCCTTCTGGGTAACGCTGAGATGATGGCCCACCACCCCACAGACCCCGTCGAGATGAGACGCATCAACTTCCAGACCCCTGgtatgatgaGCCACCCTCCTATCCCCATCACAGAGCTGGCTGAACACACAGAGCTGCTCAAGGCCAACGACAACCTGCGTCTGTCTCAGGAGTACGAGTCCATTGACCCTGGTCAGCAGTTTACCTGGGAGCACTCCAACCTGGAGGTGAACAAGCCCAAGAACCGCTATGCTAACGTCATCGCCTACGATCACACTCGCGTTGTCCTCGCTCCAATAGAGGGTTCAAGTCCAGGTATCCTGGGTAGTGACTACATCAATGCTAACTACATTGACGGCTACAGGAAGCAGAATGCCTACATTGCCACACAGGGCCCGCTGGCGGAGACGTTTGGGGACTTCTGGAGGATGGTGTGGGAACAGAGAGCAGCCTCCGTGGTCATGATGACTCGCCTGGAAGAGAAGTCacggGTAAAGTGTGACCAGTACTGGCCGACCCGTGGTTCTGAGACCTATGGGATGACCCAGGTCACCCTACTGGACACTATGGAACTGGCCACCTTCTGCGTGCGCACCTTCTCCCTGCACaagaGTGGTAGTAGTGAACGGAGGGAGGTGCGTCAGTTCCAGTTCACTGCCTGGCCGGACCACGGAGTACCAGAGTACCCCACCCCGTTCCTTGCCTTCCTACGCAGGGTTAAAGCCTGCAACCCCCCTGACGCAGGTCCTGTCATCGCACACTGCAGtgcgGGCGTGGGCCGCACCGGCTGCTTCATCGTGATCGACGCCATGCTGGAGAGAATCAGACACGAGCGCACGGCCGACGTCTACGGTCACGTGACCCTGATGAGGTCCCAGCGGAACTACATGGTGCAGACGGAGGACCAGTACGGCTTCATCCACGAGGCGCTGCTGGAAGCAGTGGCTTGTGGGAACACGGAGGTGGCGGCCAGGAGCCTGTTCTCCTACATGCAGAAGCTGGGCCAGGTGGAGAATGGAGAGCACGTCACCGGCATGGAGCTGGAATTCAAGcgtCTGGCCAACACAAAAGCCCACACGTCTCGGTTTGTCAGTGCCAACCTGCCGTGTAACAAGTTCAAGAACCGCCTGGTCAACATCATGCCCTACGAGACCACCCGTGTCTGTCTGCAGCCAATCAGAGGCCTGGAGGGCTCAGACTACATCAACGCCAGCTACATCGATGGATACAGGCAGCAGAGAGGTTACATCGCCACCCAGGGTCCACTGGCTGAGACCACAGAAGACTTCTGGAGAATGCTGTGGGAACACAACTCTACCATCGTTGTCATGCTCACTAAACTGAGAGAGATGGGACGGGAGAAGTGCCATCAGTACTGGCCTGCGGAGCGTTCAGCCAGGTACCAGTACTTTGTAGTGGATCCCATGGCTGAATACAACATGCCCCAGTACATCCTCAGAGAGTTCAAAGTCACTGACGcaaggGATGGCCAATCGCGGACAGTTCGTCAGTTTCAGTTCACTGATTGGCCAGAGCAGGGAGTTCCGAAATCTGGAGAGGGCTTCATCGACTTCATTGGCCAGGTGCACAAAACCAAGGAGCAGTTTGGTCAGGACGGCCCAATCAGTGTCCATTGCAGtgcggGTGTAGGGCGAACTGGAGTCTTCATCACTCTGAGCATTGTTCTGGAGAGGATGCGTTACGAGGGAGCTGTGGACATCTTCCAGACAGTGAAGATGCTGAGGACACAACGCCCTGCTATGGTACAGACGGAGGATGAGTACCAGTTCTCCTACCAGGCTGCCCTGGAGTACCTGGGGAGTTTTGACCACTATGCAAcctaagagaggagaggaactgtcatccctccttccttctgcTCAGATAGAGGTCCACAGAGAAACAAGGAACAACCAACGAGAGAAGCAGGCTGGAAAACGACAAAACAATGAACCTTAAATCCCACCTGAGGGACGACACTACTAACAAGGAGTAATTATTACAAGAACATCagctacaaacaaaacaacaacaacaacaacaacgagatGAATGTCAAAGAAAACCTGCGCTCTCAGGAAAGACCTGGAAAGGGTGTGTTGGGAGTCGGAGACAGACTACTACATGTGTAATCCTGCTTATTCTTCTTACCTCAGTGTTCAAAATGTGGAGGACTTATAAtacctgtgtgtgttgtggtcagCTATTTCAAAAATGAAACCAGTGAAAAACAAAAACTGCTTCAGAAACAGGAGTTGTGATATGTGTGTGTAAAAAAATACAAGGACACAAAAAGCCTGGATATTTGCTGCACCCTAAATGGGTTTTTGTGTTATTATCTTTCTATCTATGGGTTAAGTGTACGAGGTGTGAAAGTGCAAAGGTGAACGTTTTCATGTGTCTGTCGTTCTGCATTCTGGTGTCTGTTGCTGCCAGAGCTAGTCCTGGCTTAACCTGAGCACAGTTTTAGACAGAGGACTAAACCTAGTCCTAGACATCAAAGTAGGACTAGAGGGACGGTTTGAGCTGCATGTCCGTGATTGGACGCCAGACTCTCCTACCCACAGTGCCAAGAGAAACCACGCTGTTCCTGGGCAGATGGAAAATGTACTTTGACCTCTGATGAGGAGGAATGGTGCCCTACTATCTGTACATCCAGCTTACAATACATGAGCAGTAAACTcacagatctagaatcagtttaCCATCCTTAAATTGTAACCTAAACCATTTGGTTGAAAAAGCTAAATTGACCTTGATCAGTGTCtgggggcaacttcaccctactccaAGTGGGGATCAATATTATTACAAGTCAATGTTTGGTCATCCATGCTTACTTGCTATTGCTGACATCATATTTCATAACCTAATGACAGTAAAGGTTAAACACAGATTAGGCAATTCCATGTCAATCCCAGCTAGTCATTCAAGGGGTTCCATGTATGAATTGAATGTTGTCTATATTTTTCTTGGAGGGCCATTTCGATGAATGAACAGAATTTCAAATAATGGTATTTTTTTGGGGTCAATTTCCAGCTTCTGCAGAAACAATTGTAAGGATCCTATTCATTGTGGTTCGGTGTCTTTGCCTTATGTTTCACCTGGTTGGTTCTCTGCAGCTTAGGCTGTATCCCATGTACCTGAGCTAAGCATTGAGTGTCATGATGTAGCTTACACCTATTTGAAGCTTATACCTATTGAACCTATTTGAACACCTATTTGAAGCTTATACCTATTGAACCTATTTGAACACCTATTTGAATTGTCACTATACATTGGAATGGTCCTGATGGCTCAGTGGGTTGGAGCCGGGTTATGACAGCAttaaggttgtgggttcaattcctgctTGGGGCTACGTATATGGTACTGAATATGTGTGTTAACCGCGAGTTGCTTTGGATGAAATTAGTTTTGCTTGTTAAACAATGTAAATCCCAACGGGTTGAGAGTAGAAGAAAGAGGTTTGAACTCAAACTCaacccactctcttcctctcagtctctccctcggCTCACAGTGGCTCTTTACATCTTCGCTCCGGTTTCTCTCTGCTCGTAGTCTTACTgtgcagacaaaaaaaaaaaacgaacgaCACAACTCGATGCTTTCACCTCAAGTCCACTCCGACATTCCCCACCATCCCTTGAGATGTTGTCCTCTTCTCTTATTGATTTGATGTACTATAATCTGCTTCCCCAGATACGTCGTGATTGTAGAGCACAGTATGGTTTATCGTACATGAACTTGAGCTGTACATACCGTCTGACGTATAGAGTTCTTTATAGTACATAGGCCTGAGCATAAGGcgtacatacagtacaacacgCATAATTATGTATTATTTTAAAAAAGAgccttattgttattgttgactTTGTCAAATATTTATTTGATATGATTTTTTAATATTTATTATCATTCTATTTTGTTACTGTTATTAAGACTTGATTTTTTACTATTGGTTGATTTGTTTATTCATAGTTTTATTTGGGAAAATAACCGAATATAACCAATGAGATGTTGTTTACTTGGCAAGCCAATTTTACTGTATGATATCGTCAATGTttttttaattgtcttttttatTTGCTTTAGTACAATGTGTACAGCACTCTGTGTAGAGTGCTATTTGATACTGATGTCCTCATAGATAGATACTTAGAGCCAGACCTAGTTCCAGTTCAGTGACTCCCCCCACCCCCATTATCATAGCTAAAGTGGTACGATCCGATCGCCAATACGGCGGCATAGATAGAGAGTTTAAACGGTCGAGGAAAGTACAGTAGTTGTTGAAAGTCTATGCTACACTGTTCAATTATAGTGTGCTACTATAGATCGAAGGAGTATATGATAGCATTTTGGGACAAATGGTGGGGAAAGTATTTAACAATTCAGTTATCCGAATATGAAATTTAAGTTGGGTCCAAAAGTTTATCTGGTGTGACTTAACATTTTAATgattaaaatataaatataccTGAAATGAAAGACCCACAGACTAAACATGTGACATCAAGTAAGGGCCAGTTTCTATGGCATCACATATATCCTGTTACCTAGTAACTGTTATTTTCTTTAAAACCCTGGTTGTAGATAGTATTGTATGTTGACTTTGTATTAAAAGCAGGATGATTGAAGATACAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2402988 lncRNA downstream 26430 7857231 ~ 7857462 (-) True G2100851
TU2402981 lncRNA downstream 26951 7853544 ~ 7856941 (-) True G2100844
TU2402968 lncRNA downstream 45499 7838136 ~ 7838393 (-) True G2100832
TU2402958 lncRNA downstream 53327 7830281 ~ 7830565 (-) True G2100822
TU2402957 lncRNA downstream 54025 7829644 ~ 7829867 (-) True G2100821
TU2403231 lncRNA upstream 28851 8009068 ~ 8028624 (-) True G2101052
TU2403334 lncRNA upstream 76222 8056439 ~ 8056817 (-) True G2101155
TU2403346 lncRNA upstream 88320 8068537 ~ 8068752 (-) True G2101164
TU2403355 lncRNA upstream 98306 8078523 ~ 8078732 (-) True G2101173
TU2403366 lncRNA upstream 113612 8093829 ~ 8094465 (-) True G2101184
XM_036966910.1 mRNA downstream 5526 7862322 ~ 7878366 (-) True LOC110508436
XM_021588953.2 mRNA downstream 46625 7767544 ~ 7837267 (-) False LOC110508434
XM_036966514.1 mRNA downstream 46625 7767544 ~ 7837267 (-) False LOC110508434
XM_036966515.1 mRNA downstream 46625 7767544 ~ 7837267 (-) False LOC110508434
XM_021588949.2 mRNA downstream 178020 7688645 ~ 7705872 (-) True LOC110508432
XM_021588959.2 mRNA upstream 8419 7988636 ~ 7992523 (-) True LOC110508442
XM_021588960.2 mRNA upstream 16176 7996393 ~ 8044009 (-) False LOC110508443
XM_021588961.2 mRNA upstream 16176 7996393 ~ 8044009 (-) False LOC110508443
XM_021588962.2 mRNA upstream 16176 7996393 ~ 8044009 (-) False LOC110508443
XM_021588964.2 mRNA upstream 16176 7996393 ~ 8044009 (-) False LOC110508443
TU2402916 other downstream 112709 7768416 ~ 7771183 (-) False LOC110508434
TU2402917 other downstream 112709 7768416 ~ 7771183 (-) True LOC110508434
TU2402839 other downstream 290077 7593294 ~ 7593815 (-) True G2100707
TU2402165 other downstream 677404 7203606 ~ 7206488 (-) True G2100109
TU2401301 other downstream 1444796 6426170 ~ 6439096 (-) True G2099318
TU2403222 other upstream 13194 7993411 ~ 7998865 (-) True LOC110508443
TU2403426 other upstream 178002 8158219 ~ 8158518 (-) True G2101243
TU2403666 other upstream 257927 8238144 ~ 8239853 (-) True G2101464
TU2403860 other upstream 501515 8481732 ~ 8482413 (-) True LOC118936616
TU2404356 other upstream 996635 8976852 ~ 8978099 (-) True LOC110508274

Expression Profile