RNA id: XM_021588960.2


Basic Information

Item Value
RNA id XM_021588960.2
length 3326
RNA type mRNA
GC content 0.46
exon number 12
gene id LOC110508443
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 7993411 ~ 8044009 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtgtgtgttgtcactCTCCTCCAACCTGCTCCCCGCTCAGCATGGCCAGATTTACGCAAAGTGAAAGCAGAAGGGATCAGCAGCAGCATCATCCCCAGCCGACTCATCCCGCCCCCGTCAACCTGCTTCTACAGCAGCCGCTCCTACTTATCCCTCATCAGAATCAGCTCGCGCACATCCCGGTTCCGAAACCCATGAACGGACCAGAAACTGTATCCATGCACACGGACTGCGGCGCCATGAAAGACCAGGACGCCATCAAGCTCTTCATTGGACAGATTCCGCGGAACCTCGAGGAAAAAGACCTGAAACCTCTCTTTGAACAGTTTGGGAAAATCCACGAACTGTCTGTTCTGAAGGACCGATACACAGGCATGCATAAAGGTTGTGCGTTTCTCACCTACTGTGCCCGGGATTCTGCCATCAAAGCCCAGAATGCATTGCATGAGCAGAAAACCCTACCTGGGatgaCTCGTCCCATCCAAGTGAAACCAGCTGACAGTGAGTGTCGTGGAGAGGACAGGAAGCTGTTTGTGGGGATGCTGAACAAGCAGCAGACAGAGGAGGATGTGTACCGCCTATTTGAGCCCTACGGCGCCATCGATGAGTGTACCGTACTAAGAGGTCCTGACGGAAACAGCAAAGgttgtgCATTTGTGAAGTTCTCTACTCATTCTGAAGCGCAGTCTGCCATCAGTTCCCTTCATGGGAGTCAGACCATGCCGggAGCGTCGTCCAGCCTCGTCGTGAAGTTTGCAGACACAGATAAGGAGAGGACCATACGGCGCATGCAGCAGATGGCTGGACAGTTTGGCATCTTCAACCCCTCTGTCGCCCTACCTACGTTCAGCAGCTACAGTAGCTATGCACACGCCttgatgcagcagcagcagcatgcaGCGGTGATGGCCATGTCTCAGGGGGGCTACCTGGCCCCcagcctctccttcccctccgcCCAGATCCACCAGGTGGGGGCGCTAGCAATGAACGGTCTGCCGCCCAACCCCCTCAATCTCGTGTCAGGTCTGAGCTCTCCTCCAGCCGCCCTGCCCTCCTCCCTGACCAGCCTGGTGGCCCCAATGATGAACGGGTACACCGGCCTCACCCACCAGGCTAACGGGCACCCTCTAGAAACCCTCTACACCAATGGCCTGCCGACCTACTCCACCCAGAGCCCTACTGCTGCGGACACACTGCAACAGGCCTTTACTGGGGTACAGCAatacacagccATCTACCCAGCAACTACACTGACCCCTCTAGGTCAGTCACTTTCACAGCACCCTCAGGTCATTGGCCAACAGCAGAGGGAAGGTGAGGGACCAGAGGGCTGTAATCTGTTCATCTACCACCTGCCCCAGGAGTTTGGCGATAACGAACTGATGCAGATGTTCCTGCCCTTCGGCAATGTTATCTCCTCCAAGGTATTCATGGACAGAGCGACCAATCAGAGCAAGTGTTTCGGCTTTGTGAGCTTTGATAACCCGGGTAGTGCCCAGGCTGCCATCCAAGCCATGAATGGTTTCCAGATTGGCATGAAGAGACTCAAGGTGCAACTCAAACGTCCCAAAGACGCCAGCCGCCCTTACTGACACCCCCCAGTACAGGTTTAATCAGAGGTATGGAGGACGTCTTTGATTGAATAAGGCATTTTGTGTTGAATAAGACATTTTGTGAAAGGAAAAAAGGAAAAAGTTATTCTGTTTTTAAGACAATGGAAAATAGACTTCATATGGGAGTTGGGAAGAGATCTCTTTTTATCTTCAATCATATCTGACTGGCAGAGGGAGGACTCACAGCTCTGCACCAGTGAAGGTTTGGCATCACAGATGAGAGAGCAATGGGATGATGCATAAGGATAGAACAAGACtttcaaaacaaacagaaaacttttttttaaagatacaaacacacaaaaaaaacacaatttagaATCTTTGGAGACTTGAGAGTGAAGAAGAACaccacagacagactgagaaacTGTGTTAAAAAATAATATGGATTTATGATGAACTCAGAAGAGTCTAGTGAACAAAAAGAGACTTCAGGTTTTTCCTACCATGAAATGGACAAATGAGGGTTGAAACTTGATCTGAGGATTCTAAGTATAtctggggaaaaaaatatttcttTCTCTGTGAGTCCTGAACCTGCTCTTTCTCAAGTTTCCATAGCAACCGAACAAACTGCACCCCCTTGGGATCTGAGGACCAAATGTTTTTCTCTTTAACAGGCTTGTACAAAATACTAACAAtcatataatacaatacagtataatgtttagtCTAGTACAAATTAACAATCATTAAATACTTAAATGCAGTATTCTACCTTTAGTTTAGTACACATAATAGTGACAGAGAAGTACTTCAGGTCGGCATTGGATTTATTCACCATCAGTGTACTGCTGACTACTAAGGAGTATGTAAATGTGAAATGGGATCATTTAGAATTCAGTTGGAGAGGTTAGTGAAGAAGAATGTTGCCCCGAGCTCTTTCTGTGGGATGGAATACATTATgaagtgtttgtttgtttgtttgtttgtttgaaagCCACCTTTTATCATCCTTTTACTGATAGGCTACACTTCCTCTTTGGGCACTCAGTTTGACCCTTGAACTTTTAGTTTTGTCTCCCTCTGTGCAGCAACCACTCTGAGCCTCCATTCTATTCAAAGTTGCCCATAGTCACAGATGTAGGATCAGCTCACTTTGCCCAAATACTAACCTTAAGCATTAGGAAGAAAATGCTAAACTGTACTTAGATCAGTCTGAAGGGGCTATGTCATCCTACTTCATTCTATTCTGCCTATAAAGCAAAGGCCATTGGCTCACATTCCGTTTCAGAAGCTTACTACAGTTCTCGGCTCAGGGGTTAAAAGGTCTCGAGTCAGGTGTGCCTAATGTTCGGATGAGATTGTCCATAGAAACTGATCTTAAGTCAGTTTTCTGGTTAAGGTGGTTAATGGTTAAAGTTAGGATTTGGGGAGGGCCAGCTGATCCAAGATCTGTGTGTCCACTTTGATTAGCCAGTAGATTTAGCAGGATGCATTGCTTCGTTCATTGGGTCTGTTTTGTGACAAAGAAAGTATTTGTGTATTTACATTTCAGGGATTATTTTAACGAGGGCCAGGGGATTtttctggtcaggtcacatgcTCCGGAAAAACTCCTTTACCTTACCATAACACAAAAAACCactagtacagatgtaggatcttaatttgagccagttttctacagcaggaaaatagtcctgcagcaacaggatattttaattattatgtggattatactgtaattaatggacatttttgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2403089 lncRNA downstream 60431 7924813 ~ 7935962 (-) True G2100940
TU2402988 lncRNA downstream 138931 7857231 ~ 7857462 (-) True G2100851
TU2402981 lncRNA downstream 139452 7853544 ~ 7856941 (-) True G2100844
TU2402968 lncRNA downstream 158000 7838136 ~ 7838393 (-) True G2100832
TU2402958 lncRNA downstream 165828 7830281 ~ 7830565 (-) True G2100822
TU2403334 lncRNA upstream 12430 8056439 ~ 8056817 (-) True G2101155
TU2403346 lncRNA upstream 24528 8068537 ~ 8068752 (-) True G2101164
TU2403355 lncRNA upstream 34514 8078523 ~ 8078732 (-) True G2101173
TU2403366 lncRNA upstream 49820 8093829 ~ 8094465 (-) True G2101184
TU2403367 lncRNA upstream 51108 8095117 ~ 8095345 (-) True G2101185
XM_021588959.2 mRNA downstream 3870 7988636 ~ 7992523 (-) True LOC110508442
XM_036965956.1 mRNA downstream 16175 7883892 ~ 7980218 (-) True LOC110508438
XM_036965957.1 mRNA downstream 16176 7883892 ~ 7980217 (-) False LOC110508438
XM_036965958.1 mRNA downstream 16176 7883892 ~ 7980217 (-) False LOC110508438
XM_036965959.1 mRNA downstream 16176 7883892 ~ 7980217 (-) False LOC110508438
XM_021588967.2 mRNA upstream 18031 8062040 ~ 8064564 (-) False LOC110508444
XM_036966962.1 mRNA upstream 18031 8062040 ~ 8064564 (-) False LOC110508444
XM_021588965.2 mRNA upstream 18031 8062040 ~ 8066701 (-) False LOC110508444
XM_021588966.2 mRNA upstream 18031 8062040 ~ 8066701 (-) True LOC110508444
XM_036966305.1 mRNA upstream 217147 8261156 ~ 8275376 (-) False LOC110508446
TU2402916 other downstream 225210 7768416 ~ 7771183 (-) False LOC110508434
TU2402917 other downstream 225210 7768416 ~ 7771183 (-) True LOC110508434
TU2402839 other downstream 402578 7593294 ~ 7593815 (-) True G2100707
TU2402165 other downstream 789905 7203606 ~ 7206488 (-) True G2100109
TU2401301 other downstream 1557297 6426170 ~ 6439096 (-) True G2099318
TU2403426 other upstream 114210 8158219 ~ 8158518 (-) True G2101243
TU2403666 other upstream 194135 8238144 ~ 8239853 (-) True G2101464
TU2403860 other upstream 437723 8481732 ~ 8482413 (-) True LOC118936616
TU2404356 other upstream 932843 8976852 ~ 8978099 (-) True LOC110508274
TU2405120 other upstream 1134325 9178334 ~ 9180150 (-) True LOC110508459

Expression Profile