trnal-caa-108


Basic Information

Item Value
gene id trnal-caa-108
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 9339778 ~ 9339890 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>trnal-caa-108
gtcaggatggccgagcggtctaaggcgccagactcaagttctggtctccgaatGGAGGCGCGGGTTCGAATCCCGCTTCTGACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnal-caa-108 True 84 mRNA 0.61 2 9339778 9339890

Neighbor

gene id symbol gene type direction distance location
LOC110508463 LOC106600184 coding downstream 70329 9265304 ~ 9269449 (-)
LOC110508462 lect1 coding downstream 76109 9255946 ~ 9263669 (-)
LOC110508459 LOC106599937 coding downstream 159536 9154717 ~ 9180242 (-)
LOC110508458 LOC105022262 coding downstream 216231 9107174 ~ 9123547 (-)
LOC110508456 LOC106600142 coding downstream 344032 8993922 ~ 8995746 (-)
LOC110508465 LOC106600202 coding upstream 34013 9373903 ~ 9392396 (-)
trnae-cuc-376 NA coding upstream 53391 9393281 ~ 9393352 (-)
trnae-cuc-377 NA coding upstream 54032 9393922 ~ 9393993 (-)
trnae-cuc-378 NA coding upstream 54673 9394563 ~ 9394634 (-)
casp8 casp8 coding upstream 83523 9423413 ~ 9441034 (-)
G2102731 sugt1 non-coding downstream 84612 9231694 ~ 9255166 (-)
G2102736 NA non-coding downstream 187378 9150479 ~ 9152400 (-)
G2102729 NA non-coding downstream 196046 9129789 ~ 9143732 (-)
G2102112 NA non-coding downstream 283412 9055019 ~ 9056366 (-)
G2102088 NA non-coding downstream 337931 9001577 ~ 9001847 (-)
si:ch73-71c20.5 LOC103478929 non-coding upstream 107849 9447716 ~ 9453799 (-)
G2102863 LOC106600212 non-coding upstream 132739 9472629 ~ 9474007 (-)
G2102903 NA non-coding upstream 202234 9542124 ~ 9547321 (-)
LOC110508470 LOC106600228 non-coding upstream 239294 9579184 ~ 9599623 (-)
G2102992 NA non-coding upstream 382681 9722571 ~ 9727884 (-)
LOC110508274 LOC106600446 other downstream 361679 8976699 ~ 8978156 (-)
LOC118936616 LOC106600091 other downstream 857365 8480324 ~ 8522153 (-)
G2101464 NA other downstream 1099925 8238144 ~ 8239853 (-)
G2102910 nop9 other upstream 228076 9567966 ~ 9569051 (-)
G2103015 NA other upstream 436729 9776619 ~ 9776908 (-)
LOC110508473 LOC106600236 other upstream 456604 9739138 ~ 9883971 (-)
LOC110508476 LOC106600265 other upstream 664336 10004226 ~ 10007929 (-)
G2103203 LOC106600278 other upstream 773538 10113428 ~ 10115397 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000313_01185861_01191042 PEX13 coding CI01000313 null 1185861 ~ 1191829 (+)