trnae-cuc-378


Basic Information

Item Value
gene id trnae-cuc-378
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 9394563 ~ 9394634 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>trnae-cuc-378
tccctggtggtctagtggttaggattcggcgctctcaccgccgcggcccgggttcgattcccggtcagggaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnae-cuc-378 True 72 mRNA 0.65 1 9394563 9394634

Neighbor

gene id symbol gene type direction distance location
trnae-cuc-377 NA coding downstream 570 9393922 ~ 9393993 (-)
trnae-cuc-376 NA coding downstream 1211 9393281 ~ 9393352 (-)
LOC110508465 LOC106600202 coding downstream 2167 9373903 ~ 9392396 (-)
trnal-caa-108 NA coding downstream 54673 9339778 ~ 9339890 (-)
LOC110508463 LOC106600184 coding downstream 125114 9265304 ~ 9269449 (-)
casp8 casp8 coding upstream 28779 9423413 ~ 9441034 (-)
si:ch73-71c20.5 LOC103478929 coding upstream 53082 9447716 ~ 9453799 (-)
LOC110508155 mc6zb coding upstream 59793 9454427 ~ 9465088 (-)
LOC110508468 LOC106600218 coding upstream 105395 9500029 ~ 9540206 (-)
LOC110508470 LOC106600228 coding upstream 184616 9579184 ~ 9599623 (-)
G2102731 sugt1 non-coding downstream 139397 9231694 ~ 9255166 (-)
G2102736 NA non-coding downstream 242163 9150479 ~ 9152400 (-)
G2102729 NA non-coding downstream 250831 9129789 ~ 9143732 (-)
G2102112 NA non-coding downstream 338197 9055019 ~ 9056366 (-)
G2102088 NA non-coding downstream 392716 9001577 ~ 9001847 (-)
G2102863 LOC106600212 non-coding upstream 77995 9472629 ~ 9474007 (-)
G2102903 NA non-coding upstream 147490 9542124 ~ 9547321 (-)
G2102992 NA non-coding upstream 327937 9722571 ~ 9727884 (-)
LOC110508459 LOC106599937 other downstream 214413 9154717 ~ 9180242 (-)
LOC110508274 LOC106600446 other downstream 416464 8976699 ~ 8978156 (-)
LOC118936616 LOC106600091 other downstream 912150 8480324 ~ 8522153 (-)
G2101464 NA other downstream 1154710 8238144 ~ 8239853 (-)
G2102910 nop9 other upstream 173332 9567966 ~ 9569051 (-)
G2103015 NA other upstream 381985 9776619 ~ 9776908 (-)
LOC110508473 LOC106600236 other upstream 401860 9739138 ~ 9883971 (-)
LOC110508476 LOC106600265 other upstream 609592 10004226 ~ 10007929 (-)
G2103203 LOC106600278 other upstream 718794 10113428 ~ 10115397 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) trnae-cuc_31 NA coding NC_053134.1 CM020931.1 2677463 ~ 2677534 (+)
striped catfish (Pangasianodon hypophthalmus) trnae-cuc_42 NA coding NC_047623.1 CM018569.1 3311361 ~ 3311432 (-)
tiger barb (Puntius tetrazona) trnar-ccu_47 NA misc NC_056707.1 CM032076.1 5443231 ~ 5443303 (+)
tiger barb (Puntius tetrazona) trnae-cuc_40 NA coding NC_056721.1 CM032090.1 10902069 ~ 10902140 (+)
mexican tetra (Astyanax mexicanus) trnae-cuc_42 NA coding NW_019171900.1 APWO02001498.1 193345 ~ 193416 (+)
mexican tetra (Astyanax mexicanus) trnae-cuc_75 NA coding NW_019171913.1 APWO02001511.1 1170 ~ 1241 (+)