LOC110508157 (LOC106569426)


Basic Information

Item Value
gene id LOC110508157
gene name LOC106569426
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 9897773 ~ 9937313 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110508157
ATGTACACTGCAGGAACCCAGCACTGCTCATCTGGGCCGTACCCCTCCCCTGATGTGCTGTACCAGCTGCGGGACGACACCGACCTCGAGGACGACCACAGGAATGTGGTGCGGTTCCAACATGGCGTCATCGTGGCAGTGGACTCTCGGGCCACAGCTGGCGCCTACATCGCCTCCCAGACATTGAAGAAGGTGATAGAGTTCAACCCCTACCTGCTGGGCACCATGGTTGGAGGTGCAGCTGACTGCAGCTTCTGGGAGCGCTTGCTGTCGTGTCTACGAGCTCCGCAACAAGGAGTGCATCTCTGTGGGAGCCACCTCCAAGCTTCTGGCTAACATGGTATACCAGTACAAAGGCATGGGCCTCAGCATGGGCGCCATGGTGTGTGGCTGGGACAAGAGAGGGCCAGGGCTGTACTACGTGGACTCAGAGGGGAACCGTGTGTGTGGGGACCTATTTGCGGTGGGCTCTAGCTCCATGTATGCGTATGGAGTGGTGGACAGCGGGCTGAGACAGAGTATGTCTGTAGAGGAGGCGTGCGAGTTGGGCCGCAGAGCCATCTACCAGGCCACATACCGAGACGCCTATAGCGGAGGACAGGTCAATTTGAACCAGGAAGACGTATTGAAGCTGCACCACCAATACCAGGAACAGAACAtatag

Function

NR:

description
proteasome subunit beta type-5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110508157 True 664 mRNA 0.58 3 9897773 9937313

Neighbor

gene id symbol gene type direction distance location
LOC110508473 LOC106600236 coding downstream 13802 9739138 ~ 9883971 (-)
LOC110508471 LOC106600234 coding downstream 222554 9629144 ~ 9675219 (-)
LOC110508470 LOC106600228 coding downstream 298150 9579184 ~ 9599623 (-)
LOC110508468 LOC106600218 coding downstream 357567 9500029 ~ 9540206 (-)
LOC110508155 mc6zb coding downstream 432685 9454427 ~ 9465088 (-)
LOC110508158 LOC106598039 coding upstream 1660 9938973 ~ 9940505 (-)
LOC110508476 LOC106600265 coding upstream 66913 10004226 ~ 10007929 (-)
LOC110508478 LOC106600269 coding upstream 93480 10030793 ~ 10041031 (-)
LOC118944863 NA coding upstream 121043 10058349 ~ 10060043 (-)
dhrs1 dhrs1 coding upstream 131553 10068866 ~ 10076428 (-)
G2103044 NA non-coding downstream 60273 9837278 ~ 9837500 (-)
G2103042 NA non-coding downstream 63037 9834524 ~ 9834736 (-)
G2103037 NA non-coding downstream 78731 9818822 ~ 9819042 (-)
G2103036 NA non-coding downstream 79127 9818423 ~ 9818646 (-)
G2103023 NA non-coding downstream 102888 9794381 ~ 9794885 (-)
G2103111 NA non-coding upstream 7635 9944948 ~ 9945292 (-)
G2103115 NA non-coding upstream 9754 9947067 ~ 9947303 (-)
G2103127 NA non-coding upstream 31386 9968699 ~ 9974115 (-)
G2103148 NA non-coding upstream 80414 10017727 ~ 10017943 (-)
G2103153 NA non-coding upstream 84985 10022298 ~ 10022640 (-)
G2103015 NA other downstream 120865 9776619 ~ 9776908 (-)
G2102910 nop9 other downstream 328722 9567966 ~ 9569051 (-)
G2102731 sugt1 other downstream 642607 9231694 ~ 9255166 (-)
LOC110508459 LOC106599937 other downstream 717623 9154717 ~ 9180242 (-)
G2103203 LOC106600278 other upstream 176115 10113428 ~ 10115397 (-)
G2103257 NA other upstream 268750 10206063 ~ 10206676 (-)
G2103920 NA other upstream 770699 10708012 ~ 10708499 (-)
LOC110508522 NA other upstream 948885 10886198 ~ 10894141 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G139706 LOC108438927,LOC107558100,LOC106569426 unknown NC_035912.1 CM008315.1 7168965 ~ 7182783 (-)