G139706 (LOC108438927,LOC107558100,LOC106569426)


Basic Information

Item Value
gene id G139706
gene name LOC108438927,LOC107558100,LOC106569426
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 7168965 ~ 7182783 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU189125
catcctccttctcctcctccacctctcaGCCTCTACGCTTTCTGGCTCTGGTACTGATGGTGAAGCTGCAGCACGTCTTCCTGGGACACTCTCTTCCAGCCCTCGCTGTGCACGTGGTACAGGTTGACTTGTCCACCGCTGTAGGCGTCGCGGTAGGTGGCCTGGTAGATGGCGCGCCGGCCCAAGTCGCAGGCCTCTTCCACGGTCAGGTCCTGGCGGAGGCCGCTGTCGAGGACGCCATAGGCGTACATGGAACCGGATCCCACAGCGAACTGGTCGCCACAAACACGGTTGCCCTCAGAGTCCACATAGTACAGCCCTGGCCCTCTCTTGTCCCAGCCGCAGATCATGGTGCCCATGCTGAGCCCCATTCCTTTGTACTGGTAGACCATGTTAGCCAGCAGTTTGGAGGCAGCAGCCACAGAGATGCGCTCCTTGTTGCGCAGCTCGTAGATGCGACACTGTCTGGCCAGCAGACGCTCCCAGAAACTGCagtctgcagctcctccagccaTGGTGCCCAACAGATACGGGTTAATCTCAATAACCTTCTTCACCGTCTGAGACGCAATGTAGGACCCAGCAGTTGCTCTGGAGTCTACGGCCACGATGACGCCATGCTGGAA

Function

NR:

description
PREDICTED: fibrillin-2-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU189125 True 626 TUCP 0.59 2 7168965 7182783

Neighbor

gene id symbol gene type direction distance location
prmt5 prmt5,LOC107694666,LOC107558089,LOC107668985 coding downstream 15074 7134726 ~ 7153891 (-)
LOC103044995 slc7a8a,LOC102238406,LOC107668787,LOC107753926,LOC103388347,LOC103475980,LOC108245892,LOC107377273 coding downstream 46206 7088631 ~ 7122759 (-)
LOC103044685 LOC108438930,LOC107738128,LOC107591391,LOC105021476,LOC106569429 coding downstream 86591 7046380 ~ 7082374 (-)
LOC103044081 NA coding downstream 128516 7034764 ~ 7040449 (-)
LOC103043766 NA coding downstream 136010 7029696 ~ 7032955 (-)
LOC103046059 NA coding upstream 848240 8031023 ~ 8037392 (-)
copb2 copb2,LOC107706339,LOC107567551,LOC107694662,LOC107583113,LOC107738120 coding upstream 856079 8038862 ~ 8060230 (-)
LOC103046363 LOC108442840 coding upstream 878947 8061730 ~ 8065229 (-)
rbp1 rbp1,LOC108442846 coding upstream 899133 8081916 ~ 8093129 (-)
nmnat3 nmnat3 coding upstream 915071 8097854 ~ 8123480 (-)
G139698 NA non-coding downstream 81274 7086989 ~ 7087691 (-)
G139695 NA non-coding downstream 105574 7059589 ~ 7063391 (-)
G139694 NA non-coding downstream 109666 7056820 ~ 7059299 (-)
G139691 LOC103358415,LOC107668969,LOC108438931,LOC107562413,LOC107588156,LOC106608856,LOC106577802 non-coding downstream 122703 7041590 ~ 7046262 (-)
G139647 dhrs1,LOC107591385,LOC107738130 non-coding downstream 199812 6958542 ~ 6969153 (-)
G139711 NA non-coding upstream 9062 7191845 ~ 7192399 (-)
G139815 NA non-coding upstream 289535 7472318 ~ 7472614 (-)
G139820 LOC108442582,LOC107591395,LOC107668960,LOC107738201 non-coding upstream 304782 7487565 ~ 7487899 (-)
G139821 NA non-coding upstream 324291 7507074 ~ 7507543 (-)
G139823 NA non-coding upstream 355186 7537969 ~ 7538188 (-)
LOC103041520 acin1,LOC106608850,LOC107591382 other downstream 224831 6841980 ~ 6944134 (-)
lamc1 lamc1,LOC107658363,LOC107563558,LOC107678923,LOC107557259,LOC107722047,LOC106599430 other downstream 479242 6564903 ~ 6689723 (-)
G139587 NA other downstream 738646 6417385 ~ 6430319 (-)
G139487 NA other downstream 794256 6304969 ~ 6374709 (-)
LOC111194281 NA other downstream 1114232 6022609 ~ 6054733 (-)
LOC103024234 slc25a36a,slc25a36,LOC108440632,LOC107668959,LOC107706334,LOC107694658,LOC107561809,LOC107561808 other upstream 1488241 8671024 ~ 8711099 (-)
LOC103044908 LOC103045223,LOC108413497,LOC105899383 other upstream 2514372 9697155 ~ 9714037 (-)
G140342 NA other upstream 2852620 10035403 ~ 10103457 (-)
prkci prkci,LOC107668962,LOC107659412,LOC107706387,LOC107738175,LOC107591345 other upstream 3128314 10311097 ~ 10345498 (-)
G140472 slc4a2,LOC108413474,LOC107718031 other upstream 3328306 10511089 ~ 10514807 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) LOC110508157 LOC106569426 coding NC_048592.1 CM023246.2 9897773 ~ 9937313 (-)