G139698


Basic Information

Item Value
gene id G139698
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 7086989 ~ 7087691 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU189113
gtggcgtgcttgcagaaatggcttcttttgcatcactctcccatgaTTCTTGATTAatggggtgcccaaactttttcatatgactgtaagaGACTTTCAGATAACTGTTGGGAGAATACagtactggtcaaaagttttgacATGTCtattctcattcagtgtgttttttaacattgtaaatttaatattaaaggcataataaagctacacaggaacacatgcagaattattttataaagagaaattgttaaacaaaccagaatatgtttaatactttaaattctTCTGAGTAGCTTCATTCAGCTTTTAGGAAAGATCTGCACACAGATCTGTAGTGTCACATAGAAAAAAATTCTCAGCCtattgaaggaaggagttcctggaggtgctgaacagtaatagttgctgttttccttcacgctgtgaggCTCAAGCtaatcccaaatcacctcaaatcaccatctcaggtTTAGGTGAGGGGATTCccataattctatatgtgtcccttaattgttttcatgtatttaatattagaataaaatttattaaataaagtaataaagataaacactgaattagaatgtgtgtgcacacatttgactggtgctgtaaaCTGTGTCATCTCAGTGTGTTGTCAGtgcatttataataaaaacaaaaaactaaacaaattaccAAATCAAGTGTTATTTGTCACTTAGGT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU189113 True 703 lncRNA 0.34 1 7086989 7087691

Neighbor

gene id symbol gene type direction distance location
LOC103044685 LOC108438930,LOC107738128,LOC107591391,LOC105021476,LOC106569429 coding downstream 4615 7046380 ~ 7082374 (-)
LOC103044081 NA coding downstream 46540 7034764 ~ 7040449 (-)
LOC103043766 NA coding downstream 54034 7029696 ~ 7032955 (-)
rnf212b rnf212b coding downstream 58351 7019064 ~ 7028638 (-)
LOC103040380 LOC108438941 coding downstream 246783 6828752 ~ 6840206 (-)
LOC103044995 slc7a8a,LOC102238406,LOC107668787,LOC107753926,LOC103388347,LOC103475980,LOC108245892,LOC107377273 coding upstream 940 7088631 ~ 7122759 (-)
prmt5 prmt5,LOC107694666,LOC107558089,LOC107668985 coding upstream 47035 7134726 ~ 7153891 (-)
LOC103046059 NA coding upstream 943332 8031023 ~ 8037392 (-)
copb2 copb2,LOC107706339,LOC107567551,LOC107694662,LOC107583113,LOC107738120 coding upstream 951171 8038862 ~ 8060230 (-)
LOC103046363 LOC108442840 coding upstream 974039 8061730 ~ 8065229 (-)
G139695 NA non-coding downstream 23598 7059589 ~ 7063391 (-)
G139694 NA non-coding downstream 27690 7056820 ~ 7059299 (-)
G139691 LOC103358415,LOC107668969,LOC108438931,LOC107562413,LOC107588156,LOC106608856,LOC106577802 non-coding downstream 40727 7041590 ~ 7046262 (-)
G139647 dhrs1,LOC107591385,LOC107738130 non-coding downstream 117836 6958542 ~ 6969153 (-)
G139649 NA non-coding downstream 138954 6945758 ~ 6948035 (-)
G139711 NA non-coding upstream 104154 7191845 ~ 7192399 (-)
G139815 NA non-coding upstream 384627 7472318 ~ 7472614 (-)
G139820 LOC108442582,LOC107591395,LOC107668960,LOC107738201 non-coding upstream 399874 7487565 ~ 7487899 (-)
G139821 NA non-coding upstream 419383 7507074 ~ 7507543 (-)
G139823 NA non-coding upstream 450278 7537969 ~ 7538188 (-)
LOC103041520 acin1,LOC106608850,LOC107591382 other downstream 142855 6841980 ~ 6944134 (-)
lamc1 lamc1,LOC107658363,LOC107563558,LOC107678923,LOC107557259,LOC107722047,LOC106599430 other downstream 397266 6564903 ~ 6689723 (-)
G139587 NA other downstream 656670 6417385 ~ 6430319 (-)
G139487 NA other downstream 712280 6304969 ~ 6374709 (-)
LOC111194281 NA other downstream 1032256 6022609 ~ 6054733 (-)
G139706 LOC108438927,LOC107558100,LOC106569426 other upstream 81274 7168965 ~ 7182783 (-)
LOC103024234 slc25a36a,slc25a36,LOC108440632,LOC107668959,LOC107706334,LOC107694658,LOC107561809,LOC107561808 other upstream 1583333 8671024 ~ 8711099 (-)
LOC103044908 LOC103045223,LOC108413497,LOC105899383 other upstream 2609464 9697155 ~ 9714037 (-)
G140342 NA other upstream 2947712 10035403 ~ 10103457 (-)
prkci prkci,LOC107668962,LOC107659412,LOC107706387,LOC107738175,LOC107591345 other upstream 3223406 10311097 ~ 10345498 (-)

Expression


Co-expression Network