G139587


Basic Information

Item Value
gene id G139587
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 6417385 ~ 6430319 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU188973
TAGGCCTCGTACAAAAACCTGCTGCCTCAGTCTGCACTgtatatttatcattattattcatttatataataCTACGAtgctgattttgtttttttttaacagtttgatGAAATATTTATCAGTTTGAtggattttaccacatttttaaatTGTGGAACTGCTTGAAAAAGGAGAATTTTTTAACATACAATTCTGGATGATCGGAAAACTTGACCAAACTTTCGTGAGATTTTTGTACTGGTGTAAATCACCGTGTCTGGGACTACCACGGTGCTTCAACTACTGTTACCAGCCGTACAAAAACTCTAAATAcagtttttcttcatttaaagGAGAATCAAATGTTTGGAGATGGAAAAAGTTCCAACAATATTTGAGAAATTAACCTGCCATATTTTGTGacttttagtcttttttattttaataatcttttatcatttatttgtaGGTAAATCTTCAAGCTTGCCCTTGGAATATACGAAACTCAGACTGGATTTATctacaaactttatttttttgccttttttggcttttttcttttgccttttttggacagttttctttTTGGACTttcaaaaattaataaaaaattttgTGAAATTTGTCTTGTTGTGGAAATGATGACCATAATCATTGTCCAGGGATATTGTTAGAAGGTGGATTGATGTGACTGCTGAGCTTACTTTTGGAAAACCCATCAAACTCACCGTCACACCAaaGGCTTCAACCCCAAAAAACCCTCTGTTGTCGATCCTGTCTGGCACTGACAATGGGCAGGAGTTGTGTCTGGCTGCAGGGTTCTTCCCTAAAGTGGGGGACATGTCTCTGACATTAGAAGGTGGAAACAGTGAAAAACATAATATCAGCAATGCTGCACTCTCCAAAAGCAGCACATATTACTATGCTGGCTCCTCCTCTAAGAGCATCGAAAAATGCCAGATGCAAGGACAGGAAACTACGGCAAAGGGTGATGGAAAAGCTTCTCCAGAGGAAAACAAAGAAGGTCAAGTTAATCCTACCTGCAAGACCCCCACTATTAAGACCAGAGTTACCACATCCACCATTGACCCTAAGGCGAACGCCATGTCTCTGATTGTGACGGCCGTCAGGATCCTGCTGGCTAAAGGGGTTGCGGTAAATGTGATGATGACCATTAAAGCCTTTCTTgtctgaagcaaaaaaaaaaaagaatttaaatgtttataaaactcTGTCAGGGTTCTGTTTAATTCAACATTGCTGATCTGCAGAAAATAATaatgctttttgcttttttatgtttagtatAATTTTTTAGGGATGCACAGATATGGGAATTGTTGAATTGTGATGCAGATATTCAATATTTAGCATAGacaatcattttcattttccaactcctgctggaaaatgaaatctgcatctccataaaagttgtcagtagcagagggaagcatgaagtgctgtaaaattgtgtgggaaaacaaaactgcactgactttagacttgataatagaacacagtggatcaacaccagcagatgacatgtctctccaaaccatcactgaccatcagtacattttacatttaactcAAGTCTAAAGACAgtacagtgttttcccagaaaagcttacagcacttcatgttttcCTCGGCTGActacttttatagagatgtggattttattttccagcaggcatactgcccacactgccaaaagtaccaattggtcttatataatattcaaattttctgagaaatTGACTTTTTGGTTTTGATTGCCTGAGTTTTACATTtcgaactaaattactgaaataaaataacttttcaatgataataaatatttttagatgCATCTGTACTCCAACAAAGCTGGACATCCCTTTTTTGatacagttaataaaaaaaaaaatgaatgagcaggtgtcccaatactttgaTCCATATAGTGTAACTGCCAATGCGAATACATAATCATTAAAAGTTGATTGAATTGGTACATACTGTACCTGGATTACCATTATCGTGGCTAGAACATCAACATAGCAGTGCTTAATGCAATGCGTACAATAAAAACATCATCACATATCAATTTTTTGATGACACATTTGATTACATATACTTATTGTGTGATACAAATGTTTGAAATACCAGACAAAtctaaaaatgcaaataattttAAGCAAATATCTGCTCCTATAAAATGATATGATTCTGATATCATGCTGCATCCTTCAGTATCATTGTTCGTGTGCATATTGTATGTTTTAAGCTAAGTTTATATAAtctgttttatagtttatatttccAGTAGTAcagtttattcattttagtCTTTAGTATGATGAAGggatatatgtatgtatatttaggGCTTTGCATAGTAGATAGTAGAGTAGTGATAAACTGcagttcaaaagtttggaaactcgctaataacatttttttatagaaacTAATCCTgatttactgtaaacaaaaaaaaaaaaaactaattatgcTTACCtttttaaatggattttaaatGATTACTAGGAAATAGAgaatcaaaatattaaataaaaatgtacaacatttagaataaatatatcttttaaaagtaatttagtaTCCTGAATGCCTTATGTCTGAAAAGTAGGGTTTAATTTCTAAGCCAAataattttacagaaaaaaataaataaaataaaaaagtaaatcttGGTTACACATGCTATGAATgtcatgtctattagactctatatcaggggtgtccaaactacggcccgcgggccatttgcggcctgtttccttttttggagcggcccgcgaggtattttagaaatagaatgaaagtggACCCGCTGTTAActaggtttttataatgtgagatttaaagtttgaacgctaggtgtcagaaacggccaaagagtctgagagggtgcgcagaaaaatgggccaaagagtctaaaagcggagaatgcgcatttctagcgcagaaaaacgggccaaagagtctaaaagcggagagggtgcacatttctagcgcagaaaaacgggccaaagagtctaaaagcggagagggtgcgcatttctagcgcagaaaaacgggccaaagagtctaaaagcggagagggtgcgcagaaaaatgggccaaagagtct
>TU188974
cttaataattataattagtgTTGTGAGTCCTGATGGGTCTCATGGTTGAGGTGATCTAGAGTCAGAGAGTATTTGTAAGAGTAACTAAAGCAGTGCTTCCACTGATGCTCTGACTTTTGGAAAACCAATTTCTCTCCAAGTTAATCCAAaGGCTTCAACCCCAAAAAACCCTCTGTTGTCGATCCTGTCTGGCACTGACAATGGGCAGGAGTTGTGTCTGGCTGCAGGGTTCTTCCCTAAAGTGGGGGACATGTCTCTGACATTAGAAGGTGGAAACAGTGAAAAACATAATATCAGCAATGCTGCACTCTCCAAAAGCAGCACATATTACTATGCTGGCTCCTCCTCTAAGAGCATCGAAAAATGCCAGATGCAAGGACAGGAAACTACGGCAAAGGGTGATGGAAAAGCTTCTCCAGAGGAAAACAAAGAAGGTCAAGTTAATCCTACCTGCAAGACCCCCACTATTAAGACCAGAGTTACCACATCCACCATTGACCCTAAGGCGAACGCCATGTCTCTGATTGTGACGGCCGTCAGGATCCTGCTGGCTAAAGGGGTTGCGGTAAATGTGATGATGACCATTAAAGCCTTTCTTgtctgaagcaaaaaaaaaaaagaatttaaatgtttataaaactcTGTCAGGGTTCTGTTTAATTCAACATTGCTGATCTGCAGAAAATAATaatgctttttgcttttttatgtttagtatAATTTTTTAGGGATGCACAGATATGGGAATTGTTGAATTGTGATGCAGATATTCAATATTTAGCATAGacaatcattttcattttccaactcctgctggaaaatgaaatctgcatctccataaaagttgtcagtagcagagggaagcatgaagtgctgtaaaattgtgtgggaaaacaaaactgcactgactttagacttgataatagaacacagtggatcaacaccagcagatgacatgtctctccaaaccatcactgaccatcagtacattttacatttaactcAAGTCTAAAGACAgtacagtgttttcccagaaaagcttacagcacttcatgttttcCTCGGCTGActacttttatagagatgtggattttattttccagcaggcatactgcccacactgccaaaagtaccaattggtcttatataatattcaaattttctgagaaatTGACTTTTTGGTTTTGATTGCCTGAGTTTTACATTtcgaactaaattactgaaataaaataacttttcaatgataataaatatttttagatgCATCTGTACTCCAACAAAGCTGGACATCCCTTTTTTGatacagttaataaaaaaaaaaatgaatgagcaggtgtcccaatactttgaTCCATATAGTGTAACTGCCAATGCGAATACATAATCATTAAAAGTTGATTGAATTGGTACATACTGTACCTGGATTACCATTATCGTGGCTAGAACATCAACATAGCAGTGCTTAATGCAATGCGTACAATAAAAACATCATCACATATCAATTTTTTGATGACACATTTGATTACATATACTTATTGTGTGATACAAATGTTTGAAATACCAGACAAAtctaaaaatgcaaataattttAAGCAAATATCTGCTCCTATAAAATGATATGATTCTGATATCATGCTGCATCCTTCAGTATCATTGTTCGTGTGCATATTGTATGTTTTAAGCTAAGTTTATATAAtctgttttatagtttatatttccAGTAGTAcagtttattcattttagtCTTTAGTATGATGAAGggatatatgtatgtatatttaggGCTTTGCATAGTAGATAGTAGAGTAGTGATAAACTGcagttcaaaagtttggaaactcgctaataacatttttttatagaaacTAATCCTgatttactgtaaacaaaaaaaaaaaaaactaattatgcTTACCtttttaaatggattttaaatGATTACTAGGAAATAGAgaatcaaaatattaaataaaaatgtacaacatttagaataaatatatcttttaaaagtaatttagtaTCCTGAATGCCTTATGTCTGAAAAGTAGGGTTTAATTTCTAAGCCAAataattttacagaaaaaaataaataaaataaaaaagtaaatcttGGTTACACATGCTATGAATgtcatgtctattagactctatatcaggggtgtccaaactacggcccgcgggccatttgcggcctgtttccttttttggagcggcccgcgaggtattttagaaatagaatgaaagtggACCCGCTGTTAActaggtttttataatgtgagatttaaagtttgaacgctaggtgtcagaaacggccaaagagtctgagagggtgcgcagaaaaatgggccaaagagtctaaaagcggagaatgcgcatttctagcgcagaaaaacgggccaaagagtctaaaagcggagagggtgcacatttctagcgcagaaaaacgggccaaagagtctaaaagcggagagggtgcgcatttctagcgcagaaaaacgggccaaagagtctaaaagcggagagggtgcgcagaaaaatgggccaaagagtct

Function

GO: NA

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
TU188973 True 3121 TUCP 0.35 4 6417385 6430319
TU188974 False 2552 TUCP 0.36 4 6417385 6429345

Neighbor

gene id symbol gene type direction distance location
LOC103029970 NA coding downstream 211536 6202808 ~ 6205849 (-)
LOC111194226 NA coding downstream 394789 6021098 ~ 6022596 (-)
LOC103034342 NA coding downstream 419408 5977267 ~ 5997977 (-)
b4galt2 b4galt2,LOC107700994,LOC107557142,LOC107599894,LOC107657457 coding downstream 518585 5624859 ~ 5898800 (-)
ccdc24 NA coding downstream 818610 5567184 ~ 5598775 (-)
smg7 smg7,LOC107658366,LOC107563557,LOC107557277,LOC107722067 coding upstream 9330 6439649 ~ 6473720 (-)
lamc2 NA coding upstream 80778 6511097 ~ 6549467 (-)
LOC103038610 NA coding upstream 274050 6704369 ~ 6717087 (-)
LOC103024388 chd8,LOC107738141 coding upstream 339002 6769321 ~ 6813886 (-)
LOC103040079 cbln12,LOC103040079,LOC108438942,LOC107668986,LOC107591379,LOC108267329,LOC107704284,LOC107738140,LOC107557939 coding upstream 389509 6819828 ~ 6826665 (-)
G139593 NA non-coding downstream 2014 6334767 ~ 6415371 (-)
G139500 NA non-coding downstream 8793 6406222 ~ 6408592 (-)
G139580 NA non-coding downstream 115628 6301526 ~ 6301757 (-)
G139579 NA non-coding downstream 118263 6298870 ~ 6299122 (-)
G139501 NA non-coding downstream 170656 6245435 ~ 6246729 (-)
G139588 NA non-coding upstream 79033 6509352 ~ 6581814 (-)
G139624 dhx9 non-coding upstream 299386 6729705 ~ 6731658 (-)
G139618 dhx9 non-coding upstream 305774 6736093 ~ 6738942 (-)
G139631 NA non-coding upstream 323663 6753982 ~ 6754437 (-)
G139632 NA non-coding upstream 327157 6757476 ~ 6757830 (-)
G139487 NA other downstream 42676 6304969 ~ 6374709 (-)
LOC111194281 NA other downstream 362652 6022609 ~ 6054733 (-)
G139489 NA other downstream 406518 6009053 ~ 6010867 (-)
G139105 NA other downstream 1086580 5330078 ~ 5330805 (-)
G139074 NA other downstream 1140917 5276106 ~ 5276468 (-)
lamc1 lamc1,LOC107658363,LOC107563558,LOC107678923,LOC107557259,LOC107722047,LOC106599430 other upstream 134584 6564903 ~ 6689723 (-)
LOC103041520 acin1,LOC106608850,LOC107591382 other upstream 411661 6841980 ~ 6944134 (-)
G139706 LOC108438927,LOC107558100,LOC106569426 other upstream 738646 7168965 ~ 7182783 (-)
LOC103024234 slc25a36a,slc25a36,LOC108440632,LOC107668959,LOC107706334,LOC107694658,LOC107561809,LOC107561808 other upstream 2240705 8671024 ~ 8711099 (-)
LOC103044908 LOC103045223,LOC108413497,LOC105899383 other upstream 3266836 9697155 ~ 9714037 (-)

Expression


Co-expression Network