LOC103029970


Basic Information

Item Value
gene id LOC103029970
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 6202808 ~ 6205849 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007258022.3
ATGTAGCGCCGGTGGCTTCTGAGCAGGACTAGAGTCTTTGTTTTAGAAACACAGCAGCAGACTGTTGGAGGTTAAGGTGGATTCAgggctgtttattgttttggaTCAGATCAAGTAACAGAGTCATTGTGATGTATTGATTGGAcatgttctaatagtttcaGCGCTTTGGACAGATGTTTGCTGTGGTTTAAAATGAAGACTGTATTCTCTGTAGGTGAATATGGAAGGGTGGTTAGAGTTTCCCCCGGTCTCCAGTAAAgtggagcagcagaagatccagctctgatcagcagctccacacctctGTACTCAGACTGCTCTGCTGGAGGAACACCATCAGCTCACCTGCTGCAGAACTCAATGCTATGCTGTTCCAAGTCTTATCCTGATCCCAGTGTCAACATTCCTGCAGTCAGAAGATTTCACCAAAGATTTTAAGCTGCTGAACGAAGGGAAGAACATGGCATCCTGTGAAATCTCCAATACTCAACAAACACCCTCTGCTACACCTCCCACACAAATACGGAAAAGTACAGACAAGAAGAAAATTCaccactgctcagagtgtgggaagagctttactacacagagtcatctccaaatacaccaacgcattcacactggagagaaaccgtatcagtgttcAGAGTGTGGGATAAGTTTTAAAACTCAGAGTCATCTCAAAGGACATCAGCGAACTCACACTGGAgcgaaaccgtatcactgttcagactgtgggaaaagttttactcaacagagtatcCTTAccagacaccagcgcattcacactggagagaaaccatataactgctcagactgtggcaAGAGTTTTATTCAACTGGGTCATCTCCAAAAACACCagtgcattcacactggagggAAACCATATCTCTGCTTAgaatgtgggaagagttttactacacagaatgatctccaacaacaccagcgcattcacacaggagagaaaccgtatctctgttcagactgtgggaaaagttttactcaacagagtatcCTCAtcagacaccagcgcattcacactggagagaaaccatataaCTGCTccgactgtggaaagagttttactcaacagagtatcCTTacacaacaccagcgcattcacactggagagaaaccatatttctgctcagactgtgggaacagTTTTACTTCAAAGAGTAATCTCCAGCAACACCAGCAcactcacacaggagagaaaccgtatcagtgttcAGAGTGTGGGATTAGTTTTAAAATTCAGCGTCATCTCAaagaacaccagcgcattcacactggagagaaaccatatcactgttcagactgtgggaaaagttttactcaacagagtaccCTTACAAGACAccggcgcattcacactggagagaaaccatatttctgctcagactgtgggaaaagttttactAATCAGAGTATCTGTatacaacaccagcgcattcacactggagaaaaaccatataactgctcagactgtgggaaaagttttactAATCAGAGTATCTGTATACAACACCAGCggattcacactggagagaaaccgtatcactgctcagactgtgggaagagttttattcAACGGAGTAGCCTTacaaaacaccagcgcattcacactggagagaaaccatatttctgctcagactgtgggcagaattttaatcaacagagtcatctcaaaatacaccagcgcattcacactggagaaaaaacattctactgctcagagtgtgcaGTTAGCTTTAAGTATCTACGAACACTCAACAAACACAAGTGCATAAAGAGCAGCCATGAAAATCGGCAGTGAAGCACCTAAAACCATTCCAGATCACAACCCTGGCTTTTAACAGTTTCTAAGCATaatcataaaacaaaatataggtatagtgtatgtatatgGGTGATTGACATATttggctaaataaataaataaataaataaaatcccaaATGTAAGTCATGGAAATCACTGAGTCAAGTTCTGTCAActcttaaattatatatatatatatatatatatatat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007258022.3 True 2038 mRNA 0.42 2 6202808 6205849

Neighbor

gene id symbol gene type direction distance location
LOC111194226 NA coding downstream 180212 6021098 ~ 6022596 (-)
LOC103034342 NA coding downstream 204831 5977267 ~ 5997977 (-)
b4galt2 b4galt2,LOC107700994,LOC107557142,LOC107599894,LOC107657457 coding downstream 304008 5624859 ~ 5898800 (-)
ccdc24 NA coding downstream 604033 5567184 ~ 5598775 (-)
LOC103027706 acvr1l,LOC108428902,LOC108267867,LOC107678695,LOC107602619,LOC107749086,LOC107721710 coding downstream 1157799 5031419 ~ 5045009 (-)
smg7 smg7,LOC107658366,LOC107563557,LOC107557277,LOC107722067 coding upstream 233800 6439649 ~ 6473720 (-)
lamc2 NA coding upstream 305248 6511097 ~ 6549467 (-)
LOC103038610 NA coding upstream 498520 6704369 ~ 6717087 (-)
LOC103024388 chd8,LOC107738141 coding upstream 563472 6769321 ~ 6813886 (-)
LOC103040079 cbln12,LOC103040079,LOC108438942,LOC107668986,LOC107591379,LOC108267329,LOC107704284,LOC107738140,LOC107557939 coding upstream 613979 6819828 ~ 6826665 (-)
G139554 NA non-coding downstream 19413 6181805 ~ 6183395 (-)
LOC111194291 NA non-coding downstream 33304 6165572 ~ 6169504 (-)
LOC103026010 NA non-coding downstream 78683 6120119 ~ 6124125 (-)
LOC111194293 NA non-coding downstream 116012 6085872 ~ 6086796 (-)
G139527 NA non-coding downstream 141630 6042266 ~ 6061178 (-)
G139563 NA non-coding upstream 31001 6236850 ~ 6242234 (-)
G139501 NA non-coding upstream 39586 6245435 ~ 6246729 (-)
G139579 NA non-coding upstream 93021 6298870 ~ 6299122 (-)
G139580 NA non-coding upstream 95677 6301526 ~ 6301757 (-)
G139593 NA non-coding upstream 128918 6334767 ~ 6415371 (-)
LOC111194281 NA other downstream 148075 6022609 ~ 6054733 (-)
G139489 NA other downstream 191941 6009053 ~ 6010867 (-)
G139105 NA other downstream 872003 5330078 ~ 5330805 (-)
G139074 NA other downstream 926340 5276106 ~ 5276468 (-)
LOC103034146 zgc:110366,LOC108267892,LOC108437513,LOC105007548 other downstream 1864611 4330871 ~ 4338197 (-)
G139487 NA other upstream 99120 6304969 ~ 6374709 (-)
G139587 NA other upstream 211536 6417385 ~ 6430319 (-)
lamc1 lamc1,LOC107658363,LOC107563558,LOC107678923,LOC107557259,LOC107722047,LOC106599430 other upstream 359054 6564903 ~ 6689723 (-)
LOC103041520 acin1,LOC106608850,LOC107591382 other upstream 636131 6841980 ~ 6944134 (-)
G139706 LOC108438927,LOC107558100,LOC106569426 other upstream 963116 7168965 ~ 7182783 (-)

Expression


Co-expression Network