G139527


Basic Information

Item Value
gene id G139527
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 6042266 ~ 6061178 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU188902
ATTGAGTCTGAAAGACAGgatacataaacGTATGGCTGACAATCACGCGCCACTGACACCTCACTGAAACCCATTGTGTGATTGCATGTTTTTCTCACTAACAGCTACAAAATCAGCAGATAGTGCATTCTGCATGACCTAACTTAATACAAAGGAGGCTTCTGGGCAAACAATAcggtctttctctctccgtGCACGTAAAGTCCTTCACCTGTCAAATTAAGGAGGGCATGCGCACAGGGAGAGAAACATTGTCTAATTACTGAACAATGCCGTGCTGTCTGGCTACTCATTCTCAAGGCCATACACTAGCGAATCTTGAGCTCTAACACGTAACACCATGCCTGCTGACATGGAAtaattttagcaacgcctcatcggCAGATATCGCGTCATTTTTGGTATatacatggagtcagatcattAGGGGGGTCAGAGCATATGTGGAACGGTCAACGACCGCTCTTTTCTGTGTTCTCCTGGATCCAgtcttttgtaataaatacttgttttgctTCTAACTTCACTCCATCTGTCTAGACTCCTCTATTCAACGAACACGTATGGGAGTTGTAGCCCAAGGCGAGAGGTGGGTGCGAACCCACCTTTCAATTTTC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU188902 True 617 lncRNA 0.45 2 6042266 6061178

Neighbor

gene id symbol gene type direction distance location
LOC111194226 NA coding downstream 19670 6021098 ~ 6022596 (-)
LOC103034342 NA coding downstream 44289 5977267 ~ 5997977 (-)
b4galt2 b4galt2,LOC107700994,LOC107557142,LOC107599894,LOC107657457 coding downstream 143466 5624859 ~ 5898800 (-)
ccdc24 NA coding downstream 443491 5567184 ~ 5598775 (-)
LOC103027706 acvr1l,LOC108428902,LOC108267867,LOC107678695,LOC107602619,LOC107749086,LOC107721710 coding downstream 997257 5031419 ~ 5045009 (-)
LOC103029970 NA coding upstream 141630 6202808 ~ 6205849 (-)
smg7 smg7,LOC107658366,LOC107563557,LOC107557277,LOC107722067 coding upstream 378471 6439649 ~ 6473720 (-)
lamc2 NA coding upstream 449919 6511097 ~ 6549467 (-)
LOC103038610 NA coding upstream 643191 6704369 ~ 6717087 (-)
LOC103024388 chd8,LOC107738141 coding upstream 708143 6769321 ~ 6813886 (-)
G139518 NA non-coding downstream 56190 5985431 ~ 5986076 (-)
LOC111194292 NA non-coding downstream 71940 5968952 ~ 5970326 (-)
G139488 atp6v0b,LOC102788333 non-coding downstream 114412 5905696 ~ 5927854 (-)
G139472 NA non-coding downstream 242796 5797491 ~ 5799470 (-)
G139457 NA non-coding downstream 370678 5671348 ~ 5671588 (-)
LOC111194293 NA non-coding upstream 24694 6085872 ~ 6086796 (-)
LOC103026010 NA non-coding upstream 58941 6120119 ~ 6124125 (-)
LOC111194291 NA non-coding upstream 104394 6165572 ~ 6169504 (-)
G139554 NA non-coding upstream 120627 6181805 ~ 6183395 (-)
G139497 NA non-coding upstream 137305 6198483 ~ 6232082 (-)
G139489 NA other downstream 31399 6009053 ~ 6010867 (-)
G139105 NA other downstream 711461 5330078 ~ 5330805 (-)
G139074 NA other downstream 765798 5276106 ~ 5276468 (-)
LOC103034146 zgc:110366,LOC108267892,LOC108437513,LOC105007548 other downstream 1704069 4330871 ~ 4338197 (-)
LOC103047802 pcolce2a,LOC108437522,LOC108268019 other downstream 2180910 3847722 ~ 3861356 (-)
G139487 NA other upstream 243791 6304969 ~ 6374709 (-)
G139587 NA other upstream 356207 6417385 ~ 6430319 (-)
lamc1 lamc1,LOC107658363,LOC107563558,LOC107678923,LOC107557259,LOC107722047,LOC106599430 other upstream 503725 6564903 ~ 6689723 (-)
LOC103041520 acin1,LOC106608850,LOC107591382 other upstream 780802 6841980 ~ 6944134 (-)
G139706 LOC108438927,LOC107558100,LOC106569426 other upstream 1107787 7168965 ~ 7182783 (-)

Expression


Co-expression Network