LOC111194291


Basic Information

Item Value
gene id LOC111194291
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 6165572 ~ 6169504 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU188929
ggtttctggacgcagcccGGgagacatttttaagtatacaaGCCCAGCACACTTCACCCGCTAatatttcccacaatccaccGGGAGCCGCGCTGAGCTGAGTGACCCGTCAGTGAGCGGCGGAGCGGCGGaggagaggagtggagagagagagaagtttatGAGattcaaCTATCCTTCCTACTCgagaggatgaagatgaagagagggagaaaaatgaacaatgaataaaaaaaataaataaagctactttaaagacttgtca
>XR_002651014.1
cgtccgaaatcgcgtacttccatactaaacagtatgcaaaagcagtatGCGAGATCGGGTAGTGTGTCCGAATGCGCAGTAGGCGAGTTTGAGTACGCGAAAAGTTCCCGGATGACGTACTGCACCGGgagacatttttaagtatacaaGCCCAGCACACTTCACCCGCTAatatttcccacaatccaccGGGAGCCGCGCTGAGCTGAGTGACCCGTCAGTGAGCGGCGGAGCGGCGGaggagaggagtggagagagagagaagtttatGAGattcaaCTATCCTTCCTACTCgagaggatgaagatgaagagagggagaaaaatgaacaatgaataaaaaaaataaataaagctactttaaagactt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU188929 False 265 lncRNA 0.47 3 6165572 6169504
XR_002651014.1 True 369 lncRNA 0.47 2 6165576 6166529

Neighbor

gene id symbol gene type direction distance location
LOC111194226 NA coding downstream 142976 6021098 ~ 6022596 (-)
LOC103034342 NA coding downstream 167595 5977267 ~ 5997977 (-)
b4galt2 b4galt2,LOC107700994,LOC107557142,LOC107599894,LOC107657457 coding downstream 266772 5624859 ~ 5898800 (-)
ccdc24 NA coding downstream 566797 5567184 ~ 5598775 (-)
LOC103027706 acvr1l,LOC108428902,LOC108267867,LOC107678695,LOC107602619,LOC107749086,LOC107721710 coding downstream 1120563 5031419 ~ 5045009 (-)
LOC103029970 NA coding upstream 33304 6202808 ~ 6205849 (-)
smg7 smg7,LOC107658366,LOC107563557,LOC107557277,LOC107722067 coding upstream 270145 6439649 ~ 6473720 (-)
lamc2 NA coding upstream 341593 6511097 ~ 6549467 (-)
LOC103038610 NA coding upstream 534865 6704369 ~ 6717087 (-)
LOC103024388 chd8,LOC107738141 coding upstream 599817 6769321 ~ 6813886 (-)
LOC103026010 NA non-coding downstream 41447 6120119 ~ 6124125 (-)
LOC111194293 NA non-coding downstream 78776 6085872 ~ 6086796 (-)
G139527 NA non-coding downstream 104394 6042266 ~ 6061178 (-)
G139528 NA non-coding downstream 120841 6043216 ~ 6044731 (-)
G139518 NA non-coding downstream 179496 5985431 ~ 5986076 (-)
G139554 NA non-coding upstream 12301 6181805 ~ 6183395 (-)
G139497 NA non-coding upstream 28979 6198483 ~ 6232082 (-)
G139563 NA non-coding upstream 67346 6236850 ~ 6242234 (-)
G139501 NA non-coding upstream 75931 6245435 ~ 6246729 (-)
G139579 NA non-coding upstream 129366 6298870 ~ 6299122 (-)
LOC111194281 NA other downstream 110839 6022609 ~ 6054733 (-)
G139489 NA other downstream 154705 6009053 ~ 6010867 (-)
G139105 NA other downstream 834767 5330078 ~ 5330805 (-)
G139074 NA other downstream 889104 5276106 ~ 5276468 (-)
LOC103034146 zgc:110366,LOC108267892,LOC108437513,LOC105007548 other downstream 1827375 4330871 ~ 4338197 (-)
G139487 NA other upstream 135465 6304969 ~ 6374709 (-)
G139587 NA other upstream 247881 6417385 ~ 6430319 (-)
lamc1 lamc1,LOC107658363,LOC107563558,LOC107678923,LOC107557259,LOC107722047,LOC106599430 other upstream 395399 6564903 ~ 6689723 (-)
LOC103041520 acin1,LOC106608850,LOC107591382 other upstream 672476 6841980 ~ 6944134 (-)
G139706 LOC108438927,LOC107558100,LOC106569426 other upstream 999461 7168965 ~ 7182783 (-)

Expression


Co-expression Network