LOC103041520 (acin1,LOC106608850,LOC107591382)


Basic Information

Item Value
gene id LOC103041520
gene name acin1,LOC106608850,LOC107591382
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 6841980 ~ 6944134 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU189053
GGTGCAGGCGTCGCTGGTGGGAGCCGTAGGTCCCGCAGTCGCAGCGACCCCCCGCCTAGAGACAAGCGGCGCTGAAGTACACCGGGGGGGGCGTTCTGGAACTGACTGGCCTGTATGCACCCTTTAGCGTGTGTGCTGCAAAAGCTCTGTTTCCATCGCCCAGAGACATCACGTCTGTCCATCTCACACAAACCACCTGTCCGGACTTTGTGTCTCCCTATAGACTGCTGTTGTGGTGTCTTCTACCTGGGAACTGAGACGCCACCAGTGTTCCTATCCCCGTCAGTATTTTAAGACTTGATGTAAGTGGGGTTGACTTTGTGCCAtgaatttttcttcttttaatttgAACTTCCCCAAACATCTGGGGAACAGGGCTTTTAAACTACGTTACGTCACAGCTGGTGCTCTGACAGCAGTCGAGGCACTCTGCCCGAATAGGTCCAGCTCATTACGGTTCCTAGTGCTGACCTAGGATTGTGCTGCCTTTCATATACTCATAACACAGACTCAGACAACAGGGAGCTGATACTAAAAGGCACTCGTGCTTAAAGTTCAATGCAGAAACACTAACTGTCCAGCTGTATTTTCCCTTTGTTTGAGAGGCTCTCCATTTCCCCCTTAAAGAAAGAGTGAAGATGCCTTCAGGAAGAAGAGCTTGGTGACCTTCGTCCGAATCAGCTTCATCTTCTGGAAACATTCCTGTCCACCTGTTCTTGGCCTCGATATTGTATACAGCCGTTTGGCTGTCCTGCATGGAGAATGGGATGGATATTTTAGTCTTCTCACATTTGttttaaggttgtttttttgtttgtttgttttttcattatcatttttggattaaagaacatttttaatttttgtctaCTTCTGTAAGTGCTGAatgtacaaataaaacatttaagaacagAaaaaaaaaaaaaaaaaaaaaaaaa
>TU189054
GGTGCAGGCGTCGCTGGTGGGAGCCGTAGGTCCCGCAGTCGCAGCGACCCCCCGCCTAGAGACAAGCGGCGCTGAAGTACACCGGGGGGGGCGTTCTGGAACTGACTGGCCTGTATGCACCCTTTAGCGTGTGTGCTGCAAAAGCTCTGTTTCCATCGCCCAGAGACATCACGTCTGTCCATCTCACACAAACCACCTGTCCGGACTTTGTGTCTCCCTATAGACTGCTGTTGTGGTGTCTTCTACCTGGGAACTGAGACGCCACCAGTGTTCCTATCCCCGTCAGTATTTTAAGACTTGATGTAAGTGGGGTTGACTTTGTGCCAtgaatttttcttcttttaatttgAACTTCCCCAAACATCTGGGGAACAGGGCTTTTAAACTACGTTACGTCACAGCTGGTGCTCTGACAGCAGTCGAGGCACTCTGCCCGAATAGGTCCAGCTCATTACGGTTCCTAGTGCTGACCTAGGATTGTGCTGCCTTTCATATACTCATAACACAGACTCAGACAACAGGGAGCTGATACTAAAAGGCACTCGTGCTTAAAGTTCAATGCAGAAACACTAACTGTCCAGCTGTATTTTCCCTTTGTTTGAGAGGCTCTCCATTTCCCCCTTAAAGAAAGAGTGAAGATGCCTTCAGGAAGAAGAGCTTGGTGACCTTCGTCCGAATCAGCTTCATCTTCTGGAAACATTCCTGTCCACCTGTTCTTGGCCTCGATATTGTATACAGCCGTTTGGCTGTCCTGCATGGAGAATGGGATGGATATTTTAGTCTTCTCACATTTGttttaaggttgtttttttgtttgtttgttttttcattatcatttttggattaaagaacatttttaatttttgtacattcag
>XM_022677924.1
GCGTTGCGCTTCCACGCGCCAGAGAGCGAGCCGAGCAAGAGTCGAGGCGCTTCATCATGGCGGACCTGGAAGACGTTACGCTGGACGGGAGGCCGCTCCAATCCCTCCGAGTGGCGGACCTGAAGGCGGCCCTGGAGGAGAGAGGGCTCTCGAAGAGCGGGCAGAAAAATGCGCTCGTCAAGCGGCTCAAAGGGGCTCTCATGCTGGAAAACCTCCAGAAGACTTCCACCCATCATACTGGTCTGCAGCCAAACTCCCAGATTGGGGAGGAGATGAGTCAGAACAGCTTTATTAAACAGTACCTTGCAAAGCAACAGGAGCTTCTTAGGCAGCGTTTGGAGAGAGAGGCACGTGAGGCAATTGAAACTGATGACCATGAAGACCATGGCGAGACTAACGATAACAACATTTGTTCTGCATCAAATGAGGATACTGCCGCTGAAGTAATTGACCAAAATAAACCTGCTGCCCCAGTGGGTGAGGGATTTGTCGCTACAAGGCGTGGAAATGCTCACAGGGAAAGAGACATTCCTATACATCCATCGCCCTCTGCACCTCGCCAACCAGATGCAGAATCGCCTTCGTCTGTCAGAGTCAGGCGTGGAAGGGATTTCAAGTCCGCTTCAAGTCATGTACCTGTTGATAGTGATGAGGATAATGAAGCTGGAGAGGATAACGATGAGGAAGAAGAGTGGAATATGGCTGCTCAGCAGAGTAAAAGAGCAAAGATGCCCAAAACCCGACCAGTTAGGGAGAGGTCTGGGAGTTCACGTCAGCCACAGCCCCCACCACACAGACCCTTACTGTCTCAACCGCTCAGACAGCCCACACCTCCTCCTTCGCCGCCTCCTGAACTTTCATTCCCTCTTCCAGACACCCCTAAACAGAGTCCACCTAGTCCAGAACTCTCGCCTAGACAGCAAACATCTAGCACATCAGGCTCTGAGAGCTCTAGTAGCAGTAGTCGTAGCAGCAGCCCTGAACCTGGAAGCGATCATACTGAACGCAAGCCAGGCCCACTCAGCCTGCTTGCTCAGAAGATGGAGTCAGAGGGAGCTTTCTCTGGAGCAGGCCGAGGTGGACGTGTGGAGGACGAAGCGGGTGCTGACGTTCTCTCTGCATTTGCAGGCAAAGGCCACCCAGGAACTGTATCTGCAGTTACCCACACGGCTAATGCAACACAACCTGGAGAAACTCTGGAGAAGGAGAGGTTGGAGAGAGAACAAGCTCAAGAGATGGCACGGCTGGAGAAAGAAAGATTGGAGCAAAATGAAAGAGAAGAAGCTCTGGAAAAGGAACGATTGAAGAAAGAAGAGGCTTTGGAGAAGGAGAGGCAGGAGAAAGAACGATTGGAGCGAGAAGAAGCTTTGAAAAAGGAGAGGCAAGAAAAGGAACGGTTGGAGAGAGAAGAAGCTCTTGAGAAGGAGAGGTTAGAGAAGGAGAGGCTGGAGAAGGAACagctagagaaagagaggctgGAGAAAGAAAGATTGGAGCAAAATGAAAGAGAAGAAGCTCTGGAGAAGGAGAGGCTAGAAAAGCAGCAGTTGGAGCGAGAAGAAGCTCTGGAGAAGGAGCGACTGGAGAAAGAACAAGCTTTGAAGAAGGAGCGGCTGGAGAAAGAACAGGCTTTGGAGAAGGAGCGACTGGAGAAAGAACAAGCTTTGGAGAAGGAACagctagagaaagagaggctaGAGAGAGAGCAGGCCTTGGAGAAGGAGAGGCTGGTGAACGAATTAGCTCTGGAGAAGGAGAGGTTGGAGAGAGAACAAGCTCAAGAGATGGCACGGCTGGAGAAAGAAAGATTGGAGCAAAATGAAAGAGAAGAAGCTCTGGAAAAGGAACGATTGAAGAAAGAAGAGGCTTTGGAGAAGGAGAGGCAGGAGAAAGAACGATTGGAGCGAGAAGAAGCTTTGAAAAAGGAGAGGCAAGAAAAGGAACGGTTGGAAAGGGAAGAAGCTCTTGAGAAGGAAAGgttggagagagaaaaagctcTGGAGAAGGAACGATTGGAAAGAGAAGAAGCTCTGGAGAAGAAGAGGCTAGAAAAGCAGCAGTTGGAGCGAGAAGAAGCTCTGGAGAAGGAACGATTGGCGAGAGAAGCAGCACTGGAGAAGGAACGATTAGAGAGAGAAGAAGCTTTGGAGAAGGAGAGGCTGGAGAAGGAACGATTGGAGAGAGAAGAAGCCTTGGAAAAGGAGAGGCTGGAGAAGGAGCGATTGGCGAGAGAAGAAGCTTTGGAGAAGGAACGGTTAGCTCTGGAGAAGGAACGATTGGCAAGAGAAGAAGCTTTAAAGAAGGAGAGGCTGGAGAAGGAACGGTTGGAGAGAGAAGAAGCTCTTGAGAAGGAACGGTTGGAGAGAGAAGAAGCTCTGAAGAATGAGAAGGAGCGAGTGGAACAAATGCAAGCTTTTGAAAAGGACAGACTGAAGAGAGAAGCTTTGGAGAATGAGAGAGTAGATAGAGTACAACCTTTCGAGAAGGCGCAATCTCCCCAATCCTCCTCAAagaaattgcacatttttaaagatCCTGTGAAAGATGTTTCCTTACCACAACCACTCTCTACTTGTCCTACAAGGCCTAACAATCAAGATGGCAATTCAACAGAGGCTGATGTATCTTTGCAGACAAAGTCTCCTAAAGATGAAAATGATAGGGGTTTAGTACCTAAAGCCTCCCTTTTAACATCCTCCCACAAGACAGGTTCACAAAATGAATCGCACAAACAGGTTGATCATGAGGTGCCAAAAGATGAAAATAATGTACAGAAAACATCCTCAGACTCCCATTCCTCACCAGAACAGCAAGAGagggaagagaagaagaagagagtaaGAAAGGACTCCTCCTCCAGTGACTCTTCATCTGACTCGGACTCTGAATCTTCATCTTCGTCAAGTTCATCtggttcttcttcttcctcgCAGGATAAATGCTCCACAATAGATGATCTGAGGTCAGAAAAAGCCAAAGGAATCAAGGGAAAGGAAAGCCAAGAGAAAGAAATCATGGATCAGCACAAGGACGTTGCaccaaaacacagaaaatataGCTTCACAGAGGAACAGGACTTAAGCAGCAAGAGCATCAGCCCAAGCAAGAAGCCTCGCCTCACAATGCCGAATAAAATGCAGACAGGAAGCAAGAGACGAGAAGACTCTGATGAGGAGGATGCTAAAACAGATGCTGAAAGTAGTGCTGTGAAGGAGGCAGTAATGGCAGAGCCTGAGAAGGTTCCAGAGAATACTGAGGAGAGCACCACCCTGAAGACGTTTTCTGCCCGCAAGATCTCTCTCAGCAGCAGCAAGCCATCACCTGGTGCCGGGAGCTCAGAGGGAGAGGCTGAGGCTGCACCTGGTACTGCCACGGTATCAGGCAGGAAGAGAAGATGGGGCTCAAGCACTACGGTCACTGCCAAGAAGCCCtccatcagcatcaccaccGACTCTCTAAAATCCTTGATTCCAGATATCCGGTCAGGCTTGACTCAGGAAGCAGTTCTGGATCTGCACCCAGAGGAGACGCCCCTCTCTGAAGAAGAGGATGGAGGAGATGCAGGAGACCAGGACCTGAAAATCAGACGAACTGTTACACAGGTTGTACCTGAGACTCAGGAGAATGGCCAGAAAGAACTGAAACTCTCTGAGCGTGAGGAGGATCCTGAGGAAGCAGTAGAGGAGCTCTCCTCCCAGAAGAGCAGACTGGAGGCTACCATGGAGACTGAGCCGTCCTTACCTACACAACATGTTGAAATGAAGACTGTAACTACCAGCGAGCCGCTGTTTCGCCGCTCCATCAGCCAGCAGAAGTCTGGCGTGAGCATCACCATTGATGACCCCGTCCGTGCTACTAAGCAGCCTTCTCCTCCTCGTGGCAAAATCTCCAACATAGTTCACGTCTGCAATCTGGTCAGGCCGTTCACCCTGGGACAGCTGAAGGAGCTGCTGAGCCGCACTGGCACCATAGTAGAAGAGGACTTCTGGATCGACAAGATAAAATCTCACTGCTATGTCTcgTACTCCAGTCTGGAAGAGGCACAGGCAACTCGTGCAGCTCTGCATGGGGTGAAATGGCCCCAGAGCAATCCaaagttcctcagtgtagacTTCTGCCAAAAGGAGGAGCTGGACTTCCACAGAGGTCTGCTGACAGGAGAGCGGCCggcagaggaggagagaggagcTGCAGCTGGGCCCGGCCTCCGTCCTGCTGGCCCCCCACTACCTCCCCACCCAGAGCGAGAACTGTGGGCTGAGCGCGAGCGAGAGAtggagaggagggagagagcaCGTACTGAGCGGGAATGGGATCGAGACAAGGTCCGAGATTTCGGAAAACCCGGAGAAGAGGGGGCGAACAGGCGGTCCCGGTCCAGAGACCGAGAGCGGAAGCGCAAGGAGAGAGGAAAGAGTAAAGAAAAGAAGACAGACAAGAAGGAGAAAGGACCAGAAGAGCCACCTGCAAAACTGTTAGATGACCTTTTCTGCAAAACCAAAACAGCCCCTTGTATTTACTGGCTCCCTCTCACTGAAGAACAGGCGGCTCAGAGGGAAGCGGCGCGTGCCGAGCGGATGAGGGAGcgagagaagagaaggaaggAGCTCCAGCTGGAGGAGGACAAGAAGCGAGAGGAGGAGCGTAAAGAAAGGTTAAAGAGTGGTGGAggggagggtgagagagagcggGACagggaaagagagcgagagcggGGCAGGGAGCGGGAGGGAGACAAGCGGAGAGACGGGTACCGCCGGCCAGGTGCAGGCGTCGCTGGTGGGAGCCGTAGGTCCCGCAGTCGCAGCGACCCCCCGCCTAGAGACAAGCGGCGCTGAAGTACACCGGGGGGGGCGTTCTGGAACTGACTGGCCTGTATGCACCCTTTAGCGTGTGTGCTGCAAAAGCTCTGTTTCCATCGCCCAGAGACATCACGTCTGTCCATCTCACACAAACCACCTGTCCGGACTTTGTGTCTCCCTATAGACTGCTGTTGTGGTGTCTTCTACCTGGGAACTGAGACGCCACCAGTGTTCCTATCCCCGTCAGTATTTTAAGACTTGATGTAAGTGGGGTTGACTTTGTGCCAtgaatttttcttcttttaatttgAACTTCCCCAAACATCTGGGGAACAGGGCTTTTAAACTACGTTACGTCACAGCTGGTGCTCTGACAGCAGTCGAGGCACTCTGCCCGAATAGGTCCAGCTCATTACGGTTCCTAGTGCTGACCTAGGATTGTGCTGCCTTTCATATACTCATAACACAGACTCAGACAACAGGGAGCTGATACTAAAAGGCACTCGTGCTTAAAGTTCAATGCAGAAACACTAACTGTCCAGCTGTATTTTCCCTTTGTTTGAGAGGCTCTCCATTTCCCCCTTAAAGAAAGAGTGAAGATGCCTTCAGGAAGAAGAGCTTGGTGACCTTCGTCCGAATCAGCTTCATCTTCTGGAAACATTCCTGTCCACCTGTTCTTGGCCTCGATATTGTATACAGCCGTTTGGCTGTCCTGCATGGAGAATGGGATGGATATTTTAGTCTTCTCACATTTGttttaaggttgtttttttgtttgtttgttttttcattatcatttttggattaaagaacatttttaatttttgtctaCTTCTGTAAGTGCTGAatgtacaaataaaacatttaagaacagA

Function

symbol description
acin1 Enables RNA binding activity. Involved in several processes, including apoptotic chromosome condensation; negative regulation of mRNA splicing, via spliceosome; and positive regulation of monocyte differentiation. Located in cytosol; nuclear speck; and plasma membrane. Part of ASAP complex. Colocalizes with exon-exon junction complex.

NR:

description
PREDICTED: apoptotic chromatin condensation inducer in the nucleus-like isoform X1

GO: NA

KEGG:

id description
K12875 ACIN1, ACINUS; apoptotic chromatin condensation inducer in the nucleus

RNA

RNA id representative length rna type GC content exon number start site end site
TU189053 False 938 lncRNA 0.45 2 6876095 6911922
TU189054 False 875 lncRNA 0.47 2 6841980 6911922
XM_022677924.1 True 5677 mRNA 0.51 20 6911009 6944134

Neighbor

gene id symbol gene type direction distance location
LOC103040380 LOC108438941 coding downstream 1774 6828752 ~ 6840206 (-)
LOC103040079 cbln12,LOC103040079,LOC108438942,LOC107668986,LOC107591379,LOC108267329,LOC107704284,LOC107738140,LOC107557939 coding downstream 15315 6819828 ~ 6826665 (-)
LOC103024388 chd8,LOC107738141 coding downstream 28094 6769321 ~ 6813886 (-)
LOC103038610 NA coding downstream 124893 6704369 ~ 6717087 (-)
lamc2 NA coding downstream 292513 6511097 ~ 6549467 (-)
rnf212b rnf212b coding upstream 74930 7019064 ~ 7028638 (-)
LOC103043766 NA coding upstream 85562 7029696 ~ 7032955 (-)
LOC103044081 NA coding upstream 90630 7034764 ~ 7040449 (-)
LOC103044685 LOC108438930,LOC107738128,LOC107591391,LOC105021476,LOC106569429 coding upstream 102246 7046380 ~ 7082374 (-)
LOC103044995 slc7a8a,LOC102238406,LOC107668787,LOC107753926,LOC103388347,LOC103475980,LOC108245892,LOC107377273 coding upstream 144497 7088631 ~ 7122759 (-)
G139635 NA non-coding downstream 74461 6765964 ~ 6767519 (-)
G139633 NA non-coding downstream 82514 6759192 ~ 6759466 (-)
G139632 NA non-coding downstream 84150 6757476 ~ 6757830 (-)
G139631 NA non-coding downstream 87543 6753982 ~ 6754437 (-)
G139618 dhx9 non-coding downstream 103038 6736093 ~ 6738942 (-)
G139649 NA non-coding upstream 1624 6945758 ~ 6948035 (-)
G139647 dhrs1,LOC107591385,LOC107738130 non-coding upstream 14408 6958542 ~ 6969153 (-)
G139691 LOC103358415,LOC107668969,LOC108438931,LOC107562413,LOC107588156,LOC106608856,LOC106577802 non-coding upstream 97456 7041590 ~ 7046262 (-)
G139694 NA non-coding upstream 112686 7056820 ~ 7059299 (-)
G139695 NA non-coding upstream 115455 7059589 ~ 7063391 (-)
lamc1 lamc1,LOC107658363,LOC107563558,LOC107678923,LOC107557259,LOC107722047,LOC106599430 other downstream 152257 6564903 ~ 6689723 (-)
G139587 NA other downstream 411661 6417385 ~ 6430319 (-)
G139487 NA other downstream 467271 6304969 ~ 6374709 (-)
LOC111194281 NA other downstream 787247 6022609 ~ 6054733 (-)
G139489 NA other downstream 831113 6009053 ~ 6010867 (-)
G139706 LOC108438927,LOC107558100,LOC106569426 other upstream 224831 7168965 ~ 7182783 (-)
LOC103024234 slc25a36a,slc25a36,LOC108440632,LOC107668959,LOC107706334,LOC107694658,LOC107561809,LOC107561808 other upstream 1726890 8671024 ~ 8711099 (-)
LOC103044908 LOC103045223,LOC108413497,LOC105899383 other upstream 2753021 9697155 ~ 9714037 (-)
G140342 NA other upstream 3091269 10035403 ~ 10103457 (-)
prkci prkci,LOC107668962,LOC107659412,LOC107706387,LOC107738175,LOC107591345 other upstream 3366963 10311097 ~ 10345498 (-)

Expression


Co-expression Network