lamc1 (lamc1,LOC107658363,LOC107563558,LOC107678923,LOC107557259,LOC107722047,LOC106599430)


Basic Information

Item Value
gene id lamc1
gene name lamc1,LOC107658363,LOC107563558,LOC107678923,LOC107557259,LOC107722047,LOC106599430
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 6564903 ~ 6689723 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU189002
ttatatatatatatataaaccccTCCCACTGCTTCCTCTCTACCACTGTGGACAAACGTGCAACATACTACACAGTCATGTATAAAACAGTATTTCTAATTTATAATGTATCAAGTATTTTAATCTGTTGTTTTATTAGTATGCGTACGAATATGTTGCACAGTCTGTAGGTTGGTTGTTATGGAGAGCATGTACTGTTCAAGGGTTTAAACCCCTCCCCTTCccccttttttaatttttttttttttcatttttaaggcaCTCCTTTCACGAACACTCTGACGGACCTGAGAAACTCCAGCTTgttatccattttttttgccTGTAAATCCAATTGTGTAACATTTGAATAATAAACCGTGGTTATTACAGGATCTTGGAAGCTGTGCTCGTGCTCATTTGATTGAATCATTCCTTTTTGGCGTTTT
>XM_022677891.1
tcatttaaaatcaaGACCCTTTTTTCTTCCCTTACAGTGGTGCACCTATCCTTTCTTCTATGGgtactattttctttttttttttgtgcagtattgtccttttgttggacctggcaaccctgtccCTATCATTCCTCTAATATTCATGATCCAATATCCAGTTAACGCCTACGAGGTCGCTCACTGCTGACGTCCCCCCACAAACTGATCACTAGAAGACCACAAAAAACCCCGCCCACTCGCGCATCAAGCCACGCCTGGTTTTCCAGCAGGCTCCGCCCAGTCCCGCTGCTCTCGCCTTTTCAGCGGCTCGGCTGGCCATCAAAGCTTCCTTCAGGCGGAAGTAGACCCTGCAACTTTTCCTCCCCTTCCAACTTGTTTGACTTGCGCACTAGCTGGCAGGGTGTAGTCTGCTCGGATCCAGCTCCTCTCCTTTCCCCAGCTTCTCCCCTTTTTCCCTccagctgtgtttttttcatgGCGCTGGTCTTAAACTCGTAAATTGAGGCGGTAAAAGCGGTGGATGTTcgccggagagagagagcgcaggaCCGGGACACAAGTGCAGCAAAGTTTCGCCGCAGTGTTTCTCTCTGCAGCGACCCGACCGTCCCGCATGATCCAGCCCTCCGTAGCTGGAGAGTCGCCGCTACAACTTTCTGCGGgcgattatttatttatctgagcGGTTTGTGAGCTTTTTAGAACTTTTCTGAGGACGACGGACACGCGCCACCAGCTTTTCCAACTTCTCCTGCTCCTCTAGCTCCAGCTCCACGACCACCATAACGTTACCATGTCCCGTCTGGCCCTCGTCGTGAGCGCGCTCGCTCTGACTCTGTGGGCTACGTGCAGCCGCGCGGCCATGGACGAGTGCGCGGACGAGTCCGGGCGGCCTCAGCGCTGCATGCCCGAGTTCGTGAACGCCGCCTTTAACGTGACCGTGGTCGCCACCAACACCTGCGGCTCGCCGCCCGAGGAGTACTGCGTGCAGACCGGCGTCACCGGAGTCACCAAGTCCTGCCACATCTGCGACGCCCGGGACCCGAGGCAGCACCACAGCGCGGTCTACCTCACCGACTACAACAACCAGGCGGATACCACCTGGTGGCAAAGCCAGACCATGCTGGCGGGCATCCAGTACCCCAACTCCATCAACCTCACCCTGCATCTAGGAAAGGCCTTTGACATCACCTATGTTCGCCTGAAGTTCCACACCAGCCGTCCAGAGAGCTTTGCCATCTACAAGCGCACGCGTGAGGGCGGGCCCTGGACCCCGTACCAGTACTACAGCGGCTCCTGCGAGAAAACCTACAGCAAGCTGAACCGAGGCTTCATCCGCACTGGTGAAGATGAGCAGCAGGCGCTTTGCACGGACGAGTTCAGTGACATCTCGCCACTCACCGGTGGAAACGTGGCCTTTTCCACACTCGAGGGCCGACCGAGCGCGTACAACTTCGACAACAGCCCTGTACTGCAGGACTGGGTGACGGCCACAGACATCCGGGTGACCCTGAACAGGCTGAACACCTTCGGAGATGAAGTCTTCAACGATCCCAAGGTCCTCAAGTCCTACTATTATGCCATCTCCGATTTTGCTGTGGGAGGAAGGTGCAAGTGTAACGGCCACGCCAGCGAGTGTGTGAAGGACGAGTACAGCAAGCTGGTGTGTAACTGCAAGCACAACACCGAGGGGGACGACTGCGGCGTCTGCAAGCCCTTCTACAACGACCGGCCCTGGAGGAGAGCCACGGCCGACAACCCCAACGAGTGTCTGCCATGCAACTGCAACGGGAAGAGCGGCGAGTGCTACTTCGACTCTGAGCTGTACCGAGCCACGGGTCACGGAGGCCACTGCCGGAACTGCGCAGACAACACAGATGGGCCCAACTGCGAGCGCTGTCTGGATAATTACTACCGAGATGGATCGGGCCAGCGCTGTCTGCCCTGCAGCTGTAACCCCGTGGGCTCTCTCAGCACCCAGTGTGACATTACAGGTCGCTGCAGCTGCAAATCCGGCGTGATGGGAGACAAGTGCGACCGCTGCCAGCCTGGATACCATACATTGACTGAGGCGGGCTGCAGCCCCTGCTCCTGCAACCCTGCTGGAAGCACTCAGGAGTGTGATGTGAATACAGGACGCTGCCAGTGCAAGGACAACGTGGATGGCTTCAACTGTGACAGgTGTAAACTGGGCTACTTTAACCTGGACCCTCAGAATCCTCAGGGCTGCACACCATGCTTCTGCTTCCATCATTccacagtgtgtgagagtgcagATGGCTACAGCATACATACCATCACCTCCAACTTCGATCGGGatgatgaaggCTGGAAGGGTAAGCAGAGAGACGGCTCCAGTGTTCCAGTGCAGTGGTCCTTAGCTTCTCAGGAAATCTCCCTCATCTCTGATGACTACTTCCCCATGTACTTTGTGGCACCAGCGAAATTCCTTGGTAACCATTTGCTGAGCTACGGACAGAACCTCACTCTGAACTTCCGGGTGGAGCGGCGTGACGCTCGTCTCTCTGCTGAGGATGTGATGctggagggggcggggctgcaAGTTGCTGTGCCCCTAATTGCACAGGGAAACTCTTATCCTGGAGAGCAGATGCAGACTTTTGTTTTCAGACTCCATCAGACTACAGACTATCCCTGGAGGCCAGTGCTGACACACGGAGACTTCCAGAAGCTTCTCCACAACCTTACCTCCATCAAAATCCGTGGTACCTACAGTGAGAGAAGTGCTGGGTACTTGGATAACGTGTCTTTGGTGAGTGCACAGCGCGGTCCTGGAACTCCAGCGCGCTGGGTGGAGAAGTGTACGTGTCCTCCGGGTTACGTGGGTCAGCACTGTGGTCAGTGCGCTCTGGGATACAGGAGGAGCAGGCCTGAGCTGGGTCTCTACAGCCCCTGTGAGCCCTGTAACTGCAACGGACACAGCGAAACCTGCGACCCTGCAACAGgAATGTGTAACTGCCAGGATAATACTGCAGGAATGAGCTGTGAAAGGTGTAAGGACGGCTTTTACGGCGATGCTACAGTTGGATCATCTTCTGATTGTAAACCCTGCCCGTGTCCCTCAGGGGCCACATGTGCACTTGTGCCCAAAACCAAGGAGGCGGTGTGCACCAACTGCCCAGCAGGCACTACAGGTAAGCGCTGTGAGCTGTGTGATGACGGTTTCTTCGGTGACCCGCTGGGAAAGAGCGGTCCAGTCCGAGCCTGCAGGGAGTGTAAATGCAGCAGCAACATCGACCCTAATGCCGTGGGAAACTGCGACCGAGAGACTGGAGAGTGTCTGAAGTGCATCTACAACACAGACGGCTTCTTCTGTGATCGCTGTAAAGAGGGCTTCTACGGCAACGCTCTGGCCACCAACGTCGCTGACAAATGCAAACCTTGTTCCTGCTCTCCATACGGTACTGTGGACCAGCAGACCACCTGCATGCAGGTGACTGGTGAGTGCACGTGTTTACCCCACGTCACCAACCGAGACTGCAGCGCCTGCCAGCCTGGATTCTACAACCTGCAGAGCGGAAAGGGCTGTGAACGttGTAACTGCAACCAGATCGGCTCTACTAACGGTCATTGTGACATTGTGAGCGGGCAGTGTGAGTGTCAGCCGGGGGTCACAGGTCAGCAGTGTGAGCGCTGTGAGGTCAACTTTTTCGGATTCAGCACCTCTGGCTGTAAACCCTGTGACTGTGACCCTGAGGGCTCTCGGCTGGCGCAGTGCAGAGAGGACGGGCGCTGTGAGTGTCGTCCAGGCTTCGTGGGAGCTCGTTGTGATATGTGTGAAGAGAATTACTTCTACAACCGCTCTACTCCAGGCTGCCAGCAGTGCCCCAACTGCTACAGCCTCGTGAGGGACAAGGTGAACCAGCACAGACAGAAACTTCATGACCTGCAGACTCTGATCGACAACCTCGGCACCCAGGACACAGTGAGCGATAAGGCTTTTGAGGATCGTCTGAAAGAAGCTGAGAAGGCCATCATGGATTTACTGAAGGAGGCACAGGCCAGCAAAGATGTGGACAAAGGCCTCTTGGATCGTCTTAAGGGCATCAACAACACTCTGACCACCCAGTGGAACCGCCTGCAGAACATTAGGAACACTGTGGATAACACTGGTACTCTGGCGGATAAAGCTCAGAACAGAGTGCGCGAGGCGGAGAAACTCATCGACCGAGCCAGAGATGAGCTGGACAAGGCAAAGGACGCCATCAGCAAAGTGGATATCAAAACTCCGACAACCACTGGAGATCCCAACAATATGACCCTCCTCGCTGAAGAGGCTCGCAACCTGGCAGAGAAGCATAAGCTAGAAGCTGATCAAATAGAGAAGACTGCGAAAGATGCCAACGACACTTCTACCAAAGCTTACAACTTACTGAAGAAGACTCTGGATGGCGAGAATAAGATCAACAGTGACATTGATGAACTCAACAAGAAATACAGTGAGGCAAAGGATCTGGCAAAGAACCTGGAGAAACAAGCCAGTAAGGTGCAAGCTGAAGCAGAAGAGGCGGGAAACAAAGCTCTGAAGATCTACGCCAACCTGACGAGCCTGCCACCCTTCGACGTCAAGTCCCTGGAGGATGAGGCCAGCAAAATAAAGAAGGAAGCGTCAGACCTGGATAAACTTATTGACAAGACTGAGAAGGAGTACAATGATCTGAGAGACGACCTGAAGGGTAAAGAGAACGAAGTGCGCAAACTGCTGGAGAAGGGGAAGACCGAGCAGCAGACGGCGGATCAGCTGCTGGCGCGGGCGGATGCAGCCAAGGCCCTGGCAGAGGAGGCAGCAAAGAAAGGGCTTTCCACTTACCAGGAGGCCCAGGACATTCTCAGCAATCTCAGAGACTTCGATAAGAGAGTAAATGACAACAAAACTGCAGCAGAGGAGGCCATGAAACGTATCCCAGAAATCAAAGCCATAATCAACGCAGCTAACGACAAGACCCGCCAGGCCGACGCCGCGCTGGGAAACGCAGCAGCTGATGCTAAAGACGCCAAATCcaaagcagaggaagctgagAAAATCGCCAGCAATGTGCAAAAGGGTTCAGCTAAAACTAAAGCAGATGCAGAGAAGGCGTTTGAAGATACTATGAAACTGGATCAGGAGGTGAACGACATGATGAAGCAGCTGGCGGCTGCAGAGAAAGAGCTCGgcgagaagaagaaggaggcaGACAATGACATGATGATGGCTAGCATGGCCTCTGATAACGCAAAGACAGCTGAGGAGAACGCCCGGAAAGCCAAAGACGCTGTCCGCACTGTCCTCGGCACAATCAACGATTTACTCGGCCAGCTCGGCAACATCGATAAAGTGGACCTGACCAAACTGGACCAGATCGACAGCTCCCTGAAGGACGCCAAGGACAAGATGGAGGGCAGCGAGCTGGACAAGAAGCTCAACGATCTGAACGACATCGCCAAGGGCCAGGAGGCCATGATCAATGACTACGACCGGCAGATCCGCGAGATCCGCGCCGACATCGCCAACCTCAACGACATCAAGAACACTCTTCCTGAAGGCTGCTTCAACACGCCGTCTCTAGAGCGGCCTTAACCTcgctcctcctcctcactccAAAACCTCCCTCTTCTCCTCTGTTCCTCGTCTGTGCCACACCTTTCGCCATCTAACACTCGGGGGGGCAGGACGCCACCCTTTACCAAAACagcttttcctctctttttttttttttcttctttttttctttcaagtCTTGGTTgtttttagctttgtttttttattttatttctacgTGTTTAGAGATAAAAGCAGCTCTTTTAcgcctttttatttttgtcttttggatATGCAGCGTCGCTACAAGGTGAAGAAAACTCTGTATcgaaaaatatatggaaatggCTCGCACTGATGTTGAGTTGTGTGCGTCCTCACTGCAGCCTGACTTAGGAGAGGAAGCCTCTGTATAGAGTCGAATGTGATCCCACATGACTGCACCACctccacttcttcttcttcttcatcctcctcctcctcatcataGTGTCTCTCAGCTCGTCTGCCCTCCTGCATTACGATAAAGCTGTGAAGGCTGCCTGTCCGCCTCGACCAGAGGACACATCGGGGACATCGTTCCGCCGCCTTCAGGAGGGGcgtggttttattgtttttttttgttgtttgtttttagttttttaagctATTGTGTCCAaccattacactacactactctacactgaTCCTGATATAATGCTTTCATTGGTTCAGAAAACGGACAGTGAAGGAATCTTCTGCTGTGTCTTCTCTTTGTCATCTGtcttcatttctttctctctctctctctttctcttattctctctctctcaagttACAAGCCCCATCCTGTGCGATGGTCCTGTAGAGAGAGATTTAATTAACCCACACTTCAGTATTGAGAGCTTGACTCGAGTCGGTCCACATGTGCCTCTTAACCATAAACAGTGACATTGTGCTCATGGTCTAAATGCATTTCATGTACACTACATAAATCATGttcatatgtttaatattttatttttgttttattttattttttgaattcccagaagctgctgcttttctgtgTACTGCAAATCACGttaacctctttttttttttttcttgtttcgtTTTCTTGTTTTAATTTCCCTTCAAGACAAAATCCAACACTATGCAACTTTGTACATTTTGCGTAGCAAGACGTTTATCTGATACACTGGTGCTAATAACTATttcaaatgttatatttttgtgtgaatgttttttttattattattatgatatagAGTGAGGATttgttatttgtgtaaatatatgcATAAATGTTTTCAGGAATggctgatttaaaataaaaataaaatctactacaaaaaaacacacaaaaaaaagctacGATCCAACCAGCCACCTCATAGGTTATTTcacaagagagaaaaagaaatcagTTGAAACCTCCACCTCcgtaataatatataaatatatatataaaatgttctgtGGTATAATATGCTTGCTTGTATACATGGCTCCGTTTTGTTGCCTCATAGCTTCGccgtttattttcatttttgtgaTTTAAATTGCGACGGGTGGTTTTTAAAGTCGACGATGGATGATGCTTTGGCGAGAAGAGTCCTCACCCTTAACTCGACTGTCCGAACAGTCTAAATGTGTGCGTCTAACATTTCAGAGAGTATTTTTCCAGGATCGGTCAGTTCACCCTGCTGAAGACAGTAAGAAGGGTTGCACATCGCTGCGCAACACATCGCTAGTTGATTAGCTTTGGTGGGGTTTGGTGCCTTTCACACTCGGGTTAGACGAAAGTCAGTCGCACGAGTTGCACATTTCTGACGTCCTTATCTGTTTAAGGAGCTGGGCGATGTATGTAGAGACACTACAGACCGTTTAAACTCTAccttttgtttgatttattattgtttttaatgtctGGTGGGCTTTTTAATGTTTCCCAGGCTTAGATTCTGGCTGCGCTGTCTTTAAATCTACCACTTGGCGCGTTTCACCCAGTGATGTGGGATATAACTGTGGAATCTGTCACCAaattcttgttctttttttttttttttttttaaataaaccccTCCCACTGCTTCCTCTCTACCACTGTGGACAAACGTGCAACATACTACACAGTCATGTATAAAACAGTATTTCTAATTTATAATGTATCAAGTATTTTAATCTGTTGTTTTATTAGTATGCGTACGAATATGTTGCACAGTCTGTAGGTTGGTTGTTATGGAGAGCATGTACTGTTCAAGGGTTTAAACCCCTCCCCTTCccccttttttaatttttttttttttcatttttaaggcaCTCCTTTCACGAACACTCTGACGGACCTGAGAAACTCCAGCTTgttatccattttttttgccTGTAAATCCAATTGTGTAACATTTGAATAATAAACCGTGGTTATTACAGGA

Function

symbol description
lamc1 Predicted to be an extracellular matrix structural constituent. Acts upstream of or within several processes, including animal organ development; detection of light stimulus involved in visual perception; and retinal ganglion cell axon guidance. Predicted to be located in extracellular region. Predicted to be active in basement membrane. Is expressed in several structures, including central nervous system; eye; median fin fold; musculature system; and optic cup. Orthologous to human LAMC1 (laminin subunit gamma 1).

NR:

description
laminin subunit gamma-1-like

GO:

id name namespace
GO:0050908 detection of light stimulus involved in visual perception biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0048570 notochord morphogenesis biological_process
GO:0007634 optokinetic behavior biological_process
GO:0007155 cell adhesion biological_process
GO:0005604 basement membrane cellular_component

KEGG:

id description
K05635 LAMC1; laminin, gamma 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU189002 False 428 lncRNA 0.36 2 6564903 6642487
XM_022677891.1 True 7962 mRNA 0.50 28 6564957 6689723

Neighbor

gene id symbol gene type direction distance location
lamc2 NA coding downstream 15436 6511097 ~ 6549467 (-)
smg7 smg7,LOC107658366,LOC107563557,LOC107557277,LOC107722067 coding downstream 91183 6439649 ~ 6473720 (-)
LOC103029970 NA coding downstream 359054 6202808 ~ 6205849 (-)
LOC111194226 NA coding downstream 542307 6021098 ~ 6022596 (-)
LOC103034342 NA coding downstream 566926 5977267 ~ 5997977 (-)
LOC103038610 NA coding upstream 14646 6704369 ~ 6717087 (-)
LOC103024388 chd8,LOC107738141 coding upstream 79598 6769321 ~ 6813886 (-)
LOC103040079 cbln12,LOC103040079,LOC108438942,LOC107668986,LOC107591379,LOC108267329,LOC107704284,LOC107738140,LOC107557939 coding upstream 130105 6819828 ~ 6826665 (-)
LOC103040380 LOC108438941 coding upstream 139029 6828752 ~ 6840206 (-)
rnf212b rnf212b coding upstream 329341 7019064 ~ 7028638 (-)
G139593 NA non-coding downstream 149532 6334767 ~ 6415371 (-)
G139500 NA non-coding downstream 156311 6406222 ~ 6408592 (-)
G139580 NA non-coding downstream 263146 6301526 ~ 6301757 (-)
G139579 NA non-coding downstream 265781 6298870 ~ 6299122 (-)
G139501 NA non-coding downstream 318174 6245435 ~ 6246729 (-)
G139624 dhx9 non-coding upstream 39982 6729705 ~ 6731658 (-)
G139618 dhx9 non-coding upstream 46370 6736093 ~ 6738942 (-)
G139631 NA non-coding upstream 64259 6753982 ~ 6754437 (-)
G139632 NA non-coding upstream 67753 6757476 ~ 6757830 (-)
G139633 NA non-coding upstream 69469 6759192 ~ 6759466 (-)
G139587 NA other downstream 134584 6417385 ~ 6430319 (-)
G139487 NA other downstream 190194 6304969 ~ 6374709 (-)
LOC111194281 NA other downstream 510170 6022609 ~ 6054733 (-)
G139489 NA other downstream 554036 6009053 ~ 6010867 (-)
G139105 NA other downstream 1234098 5330078 ~ 5330805 (-)
LOC103041520 acin1,LOC106608850,LOC107591382 other upstream 152257 6841980 ~ 6944134 (-)
G139706 LOC108438927,LOC107558100,LOC106569426 other upstream 479242 7168965 ~ 7182783 (-)
LOC103024234 slc25a36a,slc25a36,LOC108440632,LOC107668959,LOC107706334,LOC107694658,LOC107561809,LOC107561808 other upstream 1981301 8671024 ~ 8711099 (-)
LOC103044908 LOC103045223,LOC108413497,LOC105899383 other upstream 3007432 9697155 ~ 9714037 (-)
G140342 NA other upstream 3345680 10035403 ~ 10103457 (-)

Expression


Co-expression Network