G139624 (dhx9)


Basic Information

Item Value
gene id G139624
gene name dhx9
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 6729705 ~ 6731658 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU189019
ATTCATCTCCAGGTGTTTCTGCATAGAGTAGATCAGATTCCACCCAGGCAGAAACACCAGCACTGCTCCTGGAACCTGCAGCGTCTCAATATACTTCAGCAGGCCTCCATCAGCTCAAATGGTGTCTCCTTCTCATTTAACTGGGCCATGGAACGCTTGGTCTCCGGACCGTAGTCTGGCCCACAGATCAAATTACAGTTCACCTCCTCCTCACCACCTTCCTcatctttgtcttttttcttcctGTCCATTGGAGGAGGCACAAACTGTGTCATCTGAATGCAATCCTCCAGGAAATATTCTTGCACAGGATATGTGCGTCCAAACACTTCTATAACAGGACAGTTGAAGAAGTACTCTCTGAACATGGTGGTGTCGATGGTGGCAGACATGAGAATAATGCGAACATCTGGGAAAGCCTGGACCACGTCCCTCAACACCACCATTAGGAAGTCAGTATTAATGTCTCTCTCGTGGATTTCATCCACTATTACATGACTGATTCCTCGAATACCAGCTTCCAGCTTCCTCA

Function

symbol description
dhx9 Predicted to enable 3'-5' DNA helicase activity and RNA binding activity. Acts upstream of or within response to virus. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytoplasm and nucleolus. Orthologous to human DHX9 (DExH-box helicase 9).

NR:

description
PREDICTED: ATP-dependent RNA helicase A isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU189019 True 532 lncRNA 0.47 4 6729705 6731658

Neighbor

gene id symbol gene type direction distance location
LOC103038610 NA coding downstream 12618 6704369 ~ 6717087 (-)
lamc2 NA coding downstream 180238 6511097 ~ 6549467 (-)
smg7 smg7,LOC107658366,LOC107563557,LOC107557277,LOC107722067 coding downstream 255985 6439649 ~ 6473720 (-)
LOC103029970 NA coding downstream 523856 6202808 ~ 6205849 (-)
LOC111194226 NA coding downstream 707109 6021098 ~ 6022596 (-)
LOC103024388 chd8,LOC107738141 coding upstream 37663 6769321 ~ 6813886 (-)
LOC103040079 cbln12,LOC103040079,LOC108438942,LOC107668986,LOC107591379,LOC108267329,LOC107704284,LOC107738140,LOC107557939 coding upstream 88170 6819828 ~ 6826665 (-)
LOC103040380 LOC108438941 coding upstream 97094 6828752 ~ 6840206 (-)
rnf212b rnf212b coding upstream 287406 7019064 ~ 7028638 (-)
LOC103043766 NA coding upstream 298038 7029696 ~ 7032955 (-)
G139588 NA non-coding downstream 147891 6509352 ~ 6581814 (-)
G139593 NA non-coding downstream 314334 6334767 ~ 6415371 (-)
G139500 NA non-coding downstream 321113 6406222 ~ 6408592 (-)
G139580 NA non-coding downstream 427948 6301526 ~ 6301757 (-)
G139579 NA non-coding downstream 430583 6298870 ~ 6299122 (-)
G139618 dhx9 non-coding upstream 4435 6736093 ~ 6738942 (-)
G139631 NA non-coding upstream 22324 6753982 ~ 6754437 (-)
G139632 NA non-coding upstream 25818 6757476 ~ 6757830 (-)
G139633 NA non-coding upstream 27534 6759192 ~ 6759466 (-)
G139635 NA non-coding upstream 34306 6765964 ~ 6767519 (-)
lamc1 lamc1,LOC107658363,LOC107563558,LOC107678923,LOC107557259,LOC107722047,LOC106599430 other downstream 39982 6564903 ~ 6689723 (-)
G139587 NA other downstream 299386 6417385 ~ 6430319 (-)
G139487 NA other downstream 354996 6304969 ~ 6374709 (-)
LOC111194281 NA other downstream 674972 6022609 ~ 6054733 (-)
G139489 NA other downstream 718838 6009053 ~ 6010867 (-)
LOC103041520 acin1,LOC106608850,LOC107591382 other upstream 110322 6841980 ~ 6944134 (-)
G139706 LOC108438927,LOC107558100,LOC106569426 other upstream 437307 7168965 ~ 7182783 (-)
LOC103024234 slc25a36a,slc25a36,LOC108440632,LOC107668959,LOC107706334,LOC107694658,LOC107561809,LOC107561808 other upstream 1939366 8671024 ~ 8711099 (-)
LOC103044908 LOC103045223,LOC108413497,LOC105899383 other upstream 2965497 9697155 ~ 9714037 (-)
G140342 NA other upstream 3303745 10035403 ~ 10103457 (-)

Expression


Co-expression Network