LOC111194226


Basic Information

Item Value
gene id LOC111194226
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 6021098 ~ 6022596 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677699.1
tCCCCACCCCACACTGGCTCAGACTGTGAGAAGAGCTTTACTACTCAAAGTAATCTCAGAAcacaccagctcattcacactggagagaaaccgtttcactgctcagactgtgagaaGAGCTTTACTACTCAAAGTAATCTCagaacacaccagcgcattcacactggagagaaacgatttcactgctcagactgtggaatgaATTTTAATCAACAGAATAGTCTCCagcgacaccagcgcattcacactggagagaaaccgtatcactgctccgAGTGTGGTATgaattttaatcaacagagtaatctaaaaaaacaccagcacattcacactggagtAAAACCATATtgctgctcagagtgtgggaagagctttactTATCAAAGTAgtctccaacaacaccagcacattcacaccggcgagaaaccgtatcagtgttcAGAGTGTGAGAAAAGTTTTAATAATCAGAGTAATTTCAAaaaacacctgctcattcacactggagaaaaaccatatcagtgttcagactgtgggaagagttttaataatCAGAGTGGTCTCCGaacacatcagcgcattcacactggagagaaactctttcactgctcagagtgtgggaagggTTTTATTAAACAGAGAAACCTTCAACAACACCAGcttattcacactggagagaaaccgtattactgctcagagtgtgcaGTGAGTTTCAGGTATTTACAATCATTCAAGAAACACAAGTGCATTAAGAGCAGCCTTGGAAATGGAAAGTGACAATATGTGTACCCCCCAATATACATGCCAAATATCTTAAAACAGGAACTATTATTGTGTCCAATGAGTGTTGCCGTATTCCATTTTAACAGGGAACTTACTGTTGTGCCTATAAGACGTTTTATGTTCACATTTATAGTTAGTAGGACAATAATCATGATTGTGGGGCGGTAAAAATGGGAGCTCTGTAGGATAGGAAAGTGAACTGTTGTGGTAAACAgccctgttttattatttaagtaacACTTCTACAGTGATTTGTGTATGTGTTCCTTATGTCTGAATGGTTTGTATAGTAAACAGACGACCCATTTGGAAATGCTGCTGTGCATGCAAACTCTTAGCAGGAGGATTTTTCTGCTGAGAAGTGgtctaatgttttataaatgatcTCCAGGCTGCAGATAATATAGCTACTCTATAGCTATAGAGATTTTATTTACTCCTCCCATCTCAACTGAATATTTCTAAAACTGAATCTCAGCAGTTCATTAGGGAATTatgtgaacatttttatttttacatttcattcagTTGCATGAAGAAACTGTGGagatattttttctctttggaGATCTGAAATgaacatttactttattttctctGCTACCTAACTGAACTCTTACTGATGAGTCCCCCACTCCCACTCCACTACTGAAAGTAAAcaagtaatactgtatattgtctTTCTTGTCTGTCTTGaataaaaaatggttaaattaaTA

Function

GO:

id name namespace
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0000725 recombinational repair biological_process

KEGG:

id description
ko03440 Homologous recombination

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677699.1 True 1499 mRNA 0.39 1 6021098 6022596

Neighbor

gene id symbol gene type direction distance location
LOC103034342 NA coding downstream 23121 5977267 ~ 5997977 (-)
b4galt2 b4galt2,LOC107700994,LOC107557142,LOC107599894,LOC107657457 coding downstream 122298 5624859 ~ 5898800 (-)
ccdc24 NA coding downstream 422323 5567184 ~ 5598775 (-)
LOC103027706 acvr1l,LOC108428902,LOC108267867,LOC107678695,LOC107602619,LOC107749086,LOC107721710 coding downstream 976089 5031419 ~ 5045009 (-)
LOC103027391 crlf1a,crlf1,LOC108428895,LOC107602622,LOC107678692,LOC107588877,LOC107690059 coding downstream 1215431 4771793 ~ 4805667 (-)
LOC103029970 NA coding upstream 180212 6202808 ~ 6205849 (-)
smg7 smg7,LOC107658366,LOC107563557,LOC107557277,LOC107722067 coding upstream 417053 6439649 ~ 6473720 (-)
lamc2 NA coding upstream 488501 6511097 ~ 6549467 (-)
LOC103038610 NA coding upstream 681773 6704369 ~ 6717087 (-)
LOC103024388 chd8,LOC107738141 coding upstream 746725 6769321 ~ 6813886 (-)
G139518 NA non-coding downstream 35022 5985431 ~ 5986076 (-)
LOC111194292 NA non-coding downstream 50772 5968952 ~ 5970326 (-)
G139488 atp6v0b,LOC102788333 non-coding downstream 93244 5905696 ~ 5927854 (-)
G139472 NA non-coding downstream 221628 5797491 ~ 5799470 (-)
G139457 NA non-coding downstream 349510 5671348 ~ 5671588 (-)
G139527 NA non-coding upstream 19670 6042266 ~ 6061178 (-)
G139528 NA non-coding upstream 20620 6043216 ~ 6044731 (-)
LOC111194293 NA non-coding upstream 63276 6085872 ~ 6086796 (-)
LOC103026010 NA non-coding upstream 97523 6120119 ~ 6124125 (-)
LOC111194291 NA non-coding upstream 142976 6165572 ~ 6169504 (-)
G139489 NA other downstream 10231 6009053 ~ 6010867 (-)
G139105 NA other downstream 690293 5330078 ~ 5330805 (-)
G139074 NA other downstream 744630 5276106 ~ 5276468 (-)
LOC103034146 zgc:110366,LOC108267892,LOC108437513,LOC105007548 other downstream 1682901 4330871 ~ 4338197 (-)
LOC103047802 pcolce2a,LOC108437522,LOC108268019 other downstream 2159742 3847722 ~ 3861356 (-)
LOC111194281 NA other upstream 13 6022609 ~ 6054733 (-)
G139487 NA other upstream 282373 6304969 ~ 6374709 (-)
G139587 NA other upstream 394789 6417385 ~ 6430319 (-)
lamc1 lamc1,LOC107658363,LOC107563558,LOC107678923,LOC107557259,LOC107722047,LOC106599430 other upstream 542307 6564903 ~ 6689723 (-)
LOC103041520 acin1,LOC106608850,LOC107591382 other upstream 819384 6841980 ~ 6944134 (-)

Expression


Co-expression Network