prkci (prkci,LOC107668962,LOC107659412,LOC107706387,LOC107738175,LOC107591345)


Basic Information

Item Value
gene id prkci
gene name prkci,LOC107668962,LOC107659412,LOC107706387,LOC107738175,LOC107591345
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 10311097 ~ 10345498 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU190045
TGGGGGGAGTCGAGACTCCGGCTGTGTTCTCCAGACCAGGCCGCCGCTGTTGTGTTTCGGTCAGATCCGCTCACAGCCTGCCTTTAGCCCGTTTACAGCTCCGTTCTGTTCCGCGGACACACCCAGGAGGACCGGCTCCGCTGACCGGCACTAGCTTAAACCGTAGTCGAGCCGGATAAGGCGGTTTTCTCCGGGGCTTCGCTGGCTGGCGGCTCACGATGCCGACGGTGCGGGACAGCACTGCGACCCACCCGGGGGAGAACCAGCACCAGGTCCGGGTGAAGGCCTACTACCGCGGGTGAGTTCGCGTTAGTTTACTATTTTAAGTCTATATATTTAAATatatatttaaataagttaagcttgctgtcatgcaaaaagctttatatttatataaacctGAACAAtaacaaatagaaatgtttaaaagttcctagaatgtatttttacattaaaatcaaCTGAAGGTTTTCCTTCTCCTGTTGCAGTTCTGGAGATATAAGGTTTTTGTACTGTACTGtcatggttgctttggtgtagCATTAAATGGACCTCAGAGACTAATGACCAAATTACATACTTTAACACTACatctacagaaacacacacacacacacacagcactcatTCCAGCCCAGCAGATATGGGGTCACAGATGTTGGTGGTGAGGAGTCCGTTAGCACCCCGGTGCAACAAATGATTGAACCATTTACACTTCATTACACATTCCTCTACAGAACCCTCAGTGACCATTACATACTTCACACactctccaaacacacacacactgcaccaaTCACAGCTAAAaactcactcttttttttttactttgttactttgaGCTGTAAGTTAACTCTCTGAGCTCTCTGTCTGGTTGTGAGGACCGTGGTGTGGTCACACACTCAGCAGCAGTTCTTTAATATGAGAAGAAAATAATCAGCTATTCTTCCTCTTCTGTTACCTGATGAAGcttctgtccaatgaaaaacattaaa
>XM_022677704.1
TGCACAGTCTGTTGTGGGGGGAGTCGAGACTCCGGCTGTGTTCTCCAGACCAGGCCGCCGCTGTTGTGTTTCGGTCAGATCCGCTCACAGCCTGCCTTTAGCCCGTTTACAGCTCCGTTCTGTTCCGCGGACACACCCAGGAGGACCGGCTCCGCTGACCGGCACTAGCTTAAACCGTAGTCGAGCCGGATAAGGCGGTTTTCTCCGGGGCTTCGCTGGCTGGCGGCTCACGATGCCGACGGTGCGGGACAGCACTGCGACCCACCCGGGGGAGAACCAGCACCAGGTCCGGGTGAAGGCCTACTACCGCGGGactttaatatgtttttttatgtgtgtgtgtgtgtgtgtgtgtgtaggtgaccCGTGTACAGTATCATCtcagctggagctggaggaaGCACTTAGGCTGTATGAACTGAACAAAGATTCAGAACTCATTATTCATGTGTTTCCCTGCATTCCCGAGAAGCCAGGAATGCCCTGTCCAGGAGAAGACAAATCTATATATCGGCGTGGAGCACGACGCTGGAGGAAGCTCTACTATGCAAATGGCCACGCCTTCCAGGCCAAACGCTTCAACAGACGGGCTCACTGTGCTATCTGTACAGACCGAATCTGGGGTCTCGGCCGGCAGGGCTATAAATGCATCAACTGCAAACTACTGGTACACAAAAAATGCCACAAACTCGTCACAGTGGAGTGCGGCCGACAGATGATACAGGAGCCGATGCCAGGCCGAGGGGACCAGATGACACACCCACATGATCCCACAGAGATAGTTCACAAAAACTCCACTGAAAGCATCAACCATGATGAAGAGCATGAGgcGGGGGGCAGCAGAGACCCTGGTAAAGCCACCTCCAGTCTGGGTCTGGCTGATTTTGACCTGCTGAGGGTGATCGGCCGCGGAAGCTACGCGAAAGTGCTGCTGGTCCGGctgaagaaaacagaaagaattTACGCCATGAAGGTGGTAAAGAAGGAACTGGTGAACGATGATGAGGACATTGATTGGGTCCAAACAGAAAAGCATGTGTTTGAACAGGCGTCTAATCACCCGTTCCTGGTGGGTCTTCACTCCTGCTTCCAGACTGAGAGCAGGCTGTTCTTCGTGATCGAGTATGTAAATGGAGGAGACCTGATGTTCCACATGCAGCGGCAGAGGAAACTTCCGGAAGAGCACGCCAGGTTTTATTCTGCTGAAATCAGTCTGGCACTGAACTACCTGCATGAACGAGGAATCATCTACAGAGACCTCAAACTGGACAATGTCCTGCTAGAGTCTGAGGGACACATCAAACTCACTGACTATGGCATGTGCAagGAGGGGCTTAGGCCAGGAGACACTACCAGCACCTTCTGTGGCACCCCCAACTATATTGCCCCTGAAATCCTGAGAGGAGAGGACTACGGTTTCAGTGTGGACTGGTGGGCGTTAGGTGTGCTGATGTTCGAGATGATGGCAGGCCGGTCTCCGTTTGACATCGTGGGCAGCTCAGATAACCCTGACCAGAACACTGAGGATTATCTGTTCCAGGtGATCTTGGAGAAGCAGATTAGGATCCCCAGGTCATTGTCAGTGAAAGCAGCCAGCGTCCTGAAAGGATTCCTTAACAAGGAGCCGAAGGAGCGTCTGGGCTGTCACCCCCAGACAGGCTTTGCTGACATCATGGCTCATCCTTTCTTCCGAAATGTAGATTGGGACCTGATGGAGCAGAAGCAGGTTGTTCCGCCCTTCAAGCCAAACATTTCTGGAGAGTTCGGTTTGGACAATTTCGATGCTCAGTTTACCAATGAGCCAATCCAGCTCACACCGGATGATGATGATGTGGTGAAGAAGATTGATCAGTCTGAGTTCGAAGGCTTCGAGTACATCAACCCCCTGCTCATGTCTgcggaggagtgtgtgtgagcgtctacacaacacacaccgtGTGTTTGCAGTGGAGTAAGGGGGTGTTGGACCTCCTCATCTTTTGCCAaacatctctctgtctctctctatttctctctctttctctgccataTAAAACCACTCGTCCTTAAAGGCTGTTCtcccttttcctttttattttttttctttgtttttctaccATGCAAAGCTGCACTGATTGGAGGATATATTGACTATTgccttctctgattggtcagtgtagatcagagCAGGGTTTGTGTTACTGGACACTAGAGCAGAGCGGTTAGTGTGGGCTATTTTGGACAGggggatatttttatttgtacataTCTAAAGGAAACAACAGGCAGATATAGtagaaccatttttaaagtactGGGATTCTTAAAGGACGTTTCCTAGAACCTCTCAGCATGGTCCACCGATGTTTAGCCtttattttatacttattttgtgctctttttaatttaatgatgtAGTAATATGTGGAATATGCTGAGTATGGCCAGAATGAAGCAGAGGAACATAGACATTAACACTACAGTCTCCCCTCATTGTGAACACTAATAGTCTTCAGCTGAAAGAGAACCAATAACTGAGGGAGGTTCAGGTCAGCAGCTTGTGAAGCAGGACCAAAATTGAGCTGTAAAAACCTAAAGACAGGCCTGAGGGACGAGTAGCTTCAATGCAGCCTCTCACTACAGGTCTCTGTATGAGCACACTACAGGCTTATAATCGCCAAACTGATGAACATGTCACCAGAGATGGCAAATCCATGTCTAGAAAGTTAGAATCTATGACAGGATTTTGTTCCTACTGCCTGAATGACTCTTATATAACGCTGAGCTACAGCAGAGCCATCTAGGCAGGTGTTACAATTTTGTGGGGTGGAATTTTACTTTCTAGATCTGGATGTGCTGGCTTCAGCATTTCCTTTCTATCTTTTTAGTGTagttatttgttgttttatagggttctggaacaaattaagagTCTATGAATATGTATGCATTATGTTTCCCTCTTCAGTGTTTAACAGTTAgcttattttctgtttaattttgATATTTCCAAACCTCacagacagatacacacacgaactccaaaacagaaactgcagcagaagaaaaaaaaaagcaaaactttcaatgaaattcagtgtaaaataattttattctgagccattttaaaacatttctatttgtctGTTCCTCAGAGACATATTTATCATTTACCTGCCAAATTCACATTATAGCATGGTTCAATTGCATATATTTGACGTTGTGAGTGTAAATATGTCAACTTTTCTACATACAGACTTTTATGCATTGTATTACACAACTACTGACTCATTGACTTTATTGACTCAGTTTGACATAacttacagaataaaacattaaatgtgtCTTAAGCAGAATTCatgaaatgttaaatatgttgaATAATTGTATACGTTTAATTCAGTAAGTATATTAAAATTGTTTCAAATGTACAGAAGAAATGGCATTTCAAACTGTCAATTAAACAAGCATTGCACAAACTGTTGCAtgcacatacatatatttaaataagttaagcttgctgtcatgcaaaaagctttatatttatataaacctGAACAAtaacaaatagaaatgtttaaaagttcctagaatgtatttttacattaaaatcaaCTGAAGGTTTTCCTTCTCCTGTTGCAGTTCTGGAGATATAAGGTTTTTGTACTGTACTGtcatggttgctttggtgtagCATTAAATGGACCTCAGAGACTAATGACCAAATTACATACTTTAACACTACatctacagaaacacacacacacacacacagcactcatTCCAGCCCAGCAGATATGGGGTCACAGATGTTGGTGGTGAGGAGTCCGTTAGCACCCCGGTGCAACAAATGATTGAACCATTTACACTTCATTACACATTCCTCTACAGAACCCTCAGTGACCATTACATACTTCACACactctccaaacacacacacactgcaccaaTCACAGCTAAAaactcactcttttttttttactttgttactttgaGCTGTAAGTTAACTCTCTGAGCTCTCTGTCTGGTTGTGAGGACCGTGGTGTGGTCACACACTCAGCAGCAGTTCTTTAATATGAGAAGAAAATAATCAGCTATTCTTCCTCTTCTGTTACCTGATGAAGcttctgtccaatgaaaaacattaaaacatctgtttaaataaaaaagattcaaACTGTT

Function

symbol description
prkci Predicted to enable phospholipid binding activity and protein serine/threonine kinase activity. Acts upstream of with a negative effect on apical protein localization. Acts upstream of or within several processes, including animal organ development; digestive tract development; and morphogenesis of an epithelium. Located in zonula adherens. Is intrinsic component of plasma membrane. Is expressed in several structures, including blastoderm; common cardinal vein; eye; posterior lateral line primordium; and pronephric duct. Orthologous to human PRKCI (protein kinase C iota).

NR:

description
protein kinase C iota type

GO:

id name namespace
GO:0001738 morphogenesis of a polarized epithelium biological_process
GO:0007502 digestive tract mesoderm development biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0042476 odontogenesis biological_process
GO:0048546 digestive tract morphogenesis biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0000132 establishment of mitotic spindle orientation biological_process
GO:0045199 maintenance of epithelial cell apical/basal polarity biological_process
GO:0001841 neural tube formation biological_process
GO:0045217 cell-cell junction maintenance biological_process
GO:0006468 protein phosphorylation biological_process
GO:0034334 adherens junction maintenance biological_process
GO:0007097 nuclear migration biological_process
GO:0007405 neuroblast proliferation biological_process
GO:0021744 dorsal motor nucleus of vagus nerve development biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0008078 mesodermal cell migration biological_process
GO:0016332 establishment or maintenance of polarity of embryonic epithelium biological_process
GO:0031226 intrinsic component of plasma membrane cellular_component
GO:0005829 cytosol cellular_component
GO:0005915 zonula adherens cellular_component
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0005543 phospholipid binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0004697 protein kinase C activity molecular_function

KEGG:

id description
K06069 PRKCI; atypical protein kinase C iota type

RNA

RNA id representative length rna type GC content exon number start site end site
TU190045 False 995 lncRNA 0.45 2 10311130 10345484
XM_022677704.1 True 4161 mRNA 0.44 17 10311097 10345498

Neighbor

gene id symbol gene type direction distance location
skil skil coding downstream 7569 10279552 ~ 10303528 (-)
LOC103032176 nadk,LOC108444346,LOC107557499,LOC107591341,LOC107738176,LOC107659414 coding downstream 43114 10250233 ~ 10267983 (-)
LOC103033434 apoda.1,LOC103033434,LOC108444329,LOC107557469,LOC107706326,LOC107659367 coding downstream 118413 10188798 ~ 10192684 (-)
LOC103034406 elavl1,LOC103034406,LOC108444333,LOC105889513,LOC107684401,LOC108437281 coding downstream 150707 10152771 ~ 10160390 (-)
LOC103038251 prpf4b,LOC108267396,LOC107598186,LOC107670278,LOC107738454,LOC107554722,LOC106597319 coding downstream 449305 9850225 ~ 9861792 (-)
LOC103037547 NA coding upstream 25910 10371408 ~ 10394166 (-)
LOC103038916 dapk3,LOC103038916 coding upstream 68101 10413599 ~ 10425495 (-)
LOC103040378 NA coding upstream 102386 10447884 ~ 10466578 (-)
LOC103038167 LOC108437250 coding upstream 764631 11110129 ~ 11113394 (-)
LOC103041893 ankh,ankhb,LOC108437249,LOC107713990,LOC107657429 coding upstream 781783 11127281 ~ 11176854 (-)
G140374 sec62 non-coding downstream 62632 10244974 ~ 10248465 (-)
G140380 NA non-coding downstream 74363 10235790 ~ 10236734 (-)
G140347 NA non-coding downstream 141398 10167859 ~ 10169699 (-)
G140354 NA non-coding downstream 158660 10149874 ~ 10152437 (-)
G140351 NA non-coding downstream 194914 10107711 ~ 10116183 (-)
G140479 NA non-coding upstream 175893 10521391 ~ 10524421 (-)
G140481 ubtfl,LOC108267581,LOC108437253 non-coding upstream 185671 10531169 ~ 10552536 (-)
G140484 NA non-coding upstream 212944 10558442 ~ 10558712 (-)
G140490 NA non-coding upstream 226284 10571782 ~ 10574918 (-)
G140491 NA non-coding upstream 227658 10573156 ~ 10590683 (-)
G140342 NA other downstream 207640 10035403 ~ 10103457 (-)
LOC103044908 LOC103045223,LOC108413497,LOC105899383 other downstream 597060 9697155 ~ 9714037 (-)
LOC103024234 slc25a36a,slc25a36,LOC108440632,LOC107668959,LOC107706334,LOC107694658,LOC107561809,LOC107561808 other downstream 1599998 8671024 ~ 8711099 (-)
G139706 LOC108438927,LOC107558100,LOC106569426 other downstream 3128314 7168965 ~ 7182783 (-)
LOC103041520 acin1,LOC106608850,LOC107591382 other downstream 3366963 6841980 ~ 6944134 (-)
G140472 slc4a2,LOC108413474,LOC107718031 other upstream 165591 10511089 ~ 10514807 (-)
G140772 fam134b other upstream 1260737 11606235 ~ 11610529 (-)
G140975 NA other upstream 1828197 12173695 ~ 12174994 (-)
G141020 NA other upstream 2003061 12348559 ~ 12415155 (-)
LOC103027860 cacnb2b,LOC108437228,LOC107664070,LOC107713974,LOC107751551,LOC107585874 other upstream 2127306 12472804 ~ 12572147 (-)

Expression


Co-expression Network