G140490


Basic Information

Item Value
gene id G140490
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 10571782 ~ 10574918 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU190232
gcgagagagagagatgaattaaacagtgattaaacagcttcaacttacgcaggtgtccactcaggctcactcacctggtggagtgaaaatcacgctatgtttctgtttctggagcTGTCATAAAGCAAGGATGTAGGGCCCTAGAATAGAGGCACCCTAGAACAGCTCTGTGATGCATTTGTTTTCACGGtccagtaaacattttattgtaattaaattaaagattaaagatattatttgtctgttttaataagcacaatttttaattaaattcaataatattttttattttatttactcattctcacatttaaaatacctaATACAGATAAGAgcgaataaataatacatatatattaaatatattaaattgaatttgGTTTTGTATAAAGTTTAATTGTGTATACTGTACAGTGAGAAAATTGTAATGTTTGTGTCTCGTATTGTGTCTTGTGCATTCACATTTGAAGTTTTCAAGCAGCTAGATTAAACGTAAacaattaatagtttttttattttaacgtaTATGATCTTGCGAGTTGGTCTTAATTTTCTTTGgaaaagggtattaaaaagtcaTTTCATTGATGTAGCCTTCATGTATGTATTCATAATAGGTGAAAACAGACCTGAGAAACAGGCTACAGGGGGAGCACCTGGCTGCGTGCATGCGCATCAGTATTAATGGACCTTCAGTCCTTGAGTTCCCATATCAGAAGGCCTTTGagctgttctttaaaaaatccAGGAGGATTAAATGCTCTGAGCCAGCCTGCCAGATGTGCCACTGAATGTGGCTGggtgatatactgtatagatAACATGTCTGTTGTGCCCTTTCTCCTCTGTtatgtataatttaacattttgtgttgcacacttttacgtttaccgtatctgaaaaaagaacaataaggatttattttaaagaaacctactttttgcaactttttgttttaagtgggcatttttcagtgacagttggaaataaagaaaataactggaaacatgtgtaattgtgttatatcgtgatatcattaacGTGATATAAATTATCGGTTCCCAACCGGGGGGTCCTGCCACCGCACCTTCAAGGAAATCCTGGGGGAAACCCTGCT

Function

NR:

description
metal regulatory transcription factor 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU190232 True 1118 lncRNA 0.35 2 10571782 10574918

Neighbor

gene id symbol gene type direction distance location
LOC103040378 NA coding downstream 105204 10447884 ~ 10466578 (-)
LOC103038916 dapk3,LOC103038916 coding downstream 146287 10413599 ~ 10425495 (-)
LOC103037547 NA coding downstream 177616 10371408 ~ 10394166 (-)
skil skil coding downstream 268254 10279552 ~ 10303528 (-)
LOC103032176 nadk,LOC108444346,LOC107557499,LOC107591341,LOC107738176,LOC107659414 coding downstream 303799 10250233 ~ 10267983 (-)
LOC103038167 LOC108437250 coding upstream 535211 11110129 ~ 11113394 (-)
LOC103041893 ankh,ankhb,LOC108437249,LOC107713990,LOC107657429 coding upstream 552363 11127281 ~ 11176854 (-)
LOC103037030 NA coding upstream 609212 11184130 ~ 11197773 (-)
LOC111194197 NA coding upstream 811907 11386825 ~ 11388226 (-)
stard3nl stard3nl coding upstream 923137 11498055 ~ 11513466 (-)
G140484 NA non-coding downstream 13070 10558442 ~ 10558712 (-)
G140481 ubtfl,LOC108267581,LOC108437253 non-coding downstream 19246 10531169 ~ 10552536 (-)
G140479 NA non-coding downstream 47361 10521391 ~ 10524421 (-)
G140374 sec62 non-coding downstream 323317 10244974 ~ 10248465 (-)
G140380 NA non-coding downstream 335048 10235790 ~ 10236734 (-)
G140498 NA non-coding upstream 81311 10656229 ~ 10661918 (-)
G140504 LOC108437217,LOC108267758,LOC107713994,LOC107657432,LOC107718035 non-coding upstream 108698 10683616 ~ 10745378 (-)
G140512 NA non-coding upstream 177712 10752630 ~ 10752830 (-)
G140531 NA non-coding upstream 288985 10863903 ~ 10864114 (-)
G140533 NA non-coding upstream 293149 10868067 ~ 10868396 (-)
G140472 slc4a2,LOC108413474,LOC107718031 other downstream 56975 10511089 ~ 10514807 (-)
prkci prkci,LOC107668962,LOC107659412,LOC107706387,LOC107738175,LOC107591345 other downstream 226284 10311097 ~ 10345498 (-)
G140342 NA other downstream 468325 10035403 ~ 10103457 (-)
LOC103044908 LOC103045223,LOC108413497,LOC105899383 other downstream 857745 9697155 ~ 9714037 (-)
LOC103024234 slc25a36a,slc25a36,LOC108440632,LOC107668959,LOC107706334,LOC107694658,LOC107561809,LOC107561808 other downstream 1860683 8671024 ~ 8711099 (-)
G140772 fam134b other upstream 1031317 11606235 ~ 11610529 (-)
G140975 NA other upstream 1598777 12173695 ~ 12174994 (-)
G141020 NA other upstream 1773641 12348559 ~ 12415155 (-)
LOC103027860 cacnb2b,LOC108437228,LOC107664070,LOC107713974,LOC107751551,LOC107585874 other upstream 1897886 12472804 ~ 12572147 (-)
G141220 NA other upstream 2740973 13315891 ~ 13316365 (-)

Expression


Co-expression Network