LOC111194197


Basic Information

Item Value
gene id LOC111194197
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 11386825 ~ 11388226 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677673.1
CAGTTGGGGTTCAGGCTAGAGCTGGGAGACGCAGTATCAGGACTTCGGAGGAAATCTTGCAGTTACTGAGGACGAGCAGCTTTAGTGAACATTAGCAGAATGTCTTTACTGATCTCGATAAAGACGGTGGTTCAGCGGCCGGTGAAGATCAACCGGCAGAGCTGGGAGAACTTCCAGCACGGGGCGACCAACCGCCCCAGCAGGAGAGAGAAACGTCCCCACGTGTTCATGGACGGACATGAGGACGCTCCTGCACTGAAACAGGCCAGACTCCAGCTGGAGAGAGATATTGTCGTTAGCTCCAGCGGAACCTCTGGTAAGAGAAAGCTGGTGGAGACACCGGAGGAGGAAGCTCCAGTAATGAAAAAGACTCGAATCCAGCTGGAGAGAGcTCCTCCCACGGTATGGATCATAGGGGACAGCTATATTCGCCGTGGGGAGGAGATGGCGAGGAGCTCACTGGGAGGTGACCTGGGCGTACAGGCTGAGGTCAGCTGGTTCGGCTGGGGAGGACTGAGGTGGCAGGGACTCGTCCCGTTCTTCAACCAGTCTCTAATAGGAAGAACGGCTCCGGATGTGCTGATCATCCACTGTGGAGGGAACGACCTTGGAGGAATGAACGCCCTTCATCTTAGCGCCCAGATGAAGGAGGATCTCCGTGATCTCCACCGTCGTTTCCCACACATGAAGATCATGCTGTCGGAGATCACCCCCCGACGTCAGTGGAGGTCCTCCACTCACCCCAAGAGGATTGATGCAGCCCGGAAATGGGTGAACGGCGAGATGGCCGATTTCATGTTGGGAGTGAAGGGGGGTGTTATTCATCACCCGGATATCCTGTTCCACAACCCTCGACTCTTCCTCAGAGACCGGGTTCACCTGTCTCCTTCTGGCAACGAACTCTTTTTAAATGACATCGCAGAATCCCTGAAAACCTTCATCTAATAAAAGTAATTCTGCTGAAAT
>XM_022677674.1
CAGTTGGGGTTCAGGCTAGAGCTGGGAGACGCAGTATCAGGACTTCGGAGGAAATCTTGCAGTTACTGAGGACGAGCAGCTTTAGTGAACATTAGCAGAATGTCTTTACTGATCTCGATAAAGACGGTGGTTCAGCGGCCGGTGAAGATCAACCGGCAGAGCTGGGAGAACTTCCAGCACGGGGCGACCAACCGCCCCAGCAGGAGAGAGAAACGTCCCCACGTGTTCATGGACGGACATGAGGACGCTCCTGCACTGAAACAGGCCAGACTCCAGCTGGAGAGAGcTCCTCCCACGGTATGGATCATAGGGGACAGCTATATTCGCCGTGGGGAGGAGATGGCGAGGAGCTCACTGGGAGGTGACCTGGGCGTACAGGCTGAGGTCAGCTGGTTCGGCTGGGGAGGACTGAGGTGGCAGGGACTCGTCCCGTTCTTCAACCAGTCTCTAATAGGAAGAACGGCTCCGGATGTGCTGATCATCCACTGTGGAGGGAACGACCTTGGAGGAATGAACGCCCTTCATCTTAGCGCCCAGATGAAGGAGGATCTCCGTGATCTCCACCGTCGTTTCCCACACATGAAGATCATGCTGTCGGAGATCACCCCCCGACGTCAGTGGAGGTCCTCCACTCACCCCAAGAGGATTGATGCAGCCCGGAAATGGGTGAACGGCGAGATGGCCGATTTCATGTTGGGAGTGAAGGGGGGTGTTATTCATCACCCGGATATCCTGTTCCACAACCCTCGACTCTTCCTCAGAGACCGGGTTCACCTGTCTCCTTCTGGCAACGAACTCTTTTTAAATGACATCGCAGAATCCCTGAAAACCTTCATCTAATAAAAGTAATTCTGCTGAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677673.1 True 966 mRNA 0.54 3 11386825 11388226
XM_022677674.1 False 861 mRNA 0.55 2 11386825 11388226

Neighbor

gene id symbol gene type direction distance location
LOC103037030 NA coding downstream 189052 11184130 ~ 11197773 (-)
LOC103041893 ankh,ankhb,LOC108437249,LOC107713990,LOC107657429 coding downstream 209971 11127281 ~ 11176854 (-)
LOC103038167 LOC108437250 coding downstream 273431 11110129 ~ 11113394 (-)
LOC103040378 NA coding downstream 920247 10447884 ~ 10466578 (-)
LOC103038916 dapk3,LOC103038916 coding downstream 961330 10413599 ~ 10425495 (-)
stard3nl stard3nl coding upstream 109829 11498055 ~ 11513466 (-)
epdr1 epdr1,LOC107664036,LOC107558964,LOC108437243,LOC108267170,LOC107713986 coding upstream 126697 11514923 ~ 11520037 (-)
ranbp9 ranbp9,LOC107556766,LOC107664064 coding upstream 144602 11532828 ~ 11567921 (-)
rnf182 rnf182 coding upstream 179827 11568053 ~ 11573213 (-)
trnad-guc_16 NA coding upstream 367302 11755528 ~ 11755599 (-)
G140618 NA non-coding downstream 197157 11115338 ~ 11189668 (-)
LOC103038501 NA non-coding downstream 283487 10995257 ~ 11103338 (-)
G140609 NA non-coding downstream 315366 11070388 ~ 11071459 (-)
G140551 NA non-coding downstream 407741 10978751 ~ 10979084 (-)
G140542 NA non-coding downstream 470828 10915794 ~ 10915997 (-)
G140735 NA non-coding upstream 35939 11424165 ~ 11425127 (-)
G140748 NA non-coding upstream 86731 11474957 ~ 11530810 (-)
G140754 NA non-coding upstream 133234 11521460 ~ 11523962 (-)
G140798 NA non-coding upstream 300326 11688552 ~ 11692103 (-)
G140822 NA non-coding upstream 418606 11806832 ~ 11807230 (-)
G140472 slc4a2,LOC108413474,LOC107718031 other downstream 872018 10511089 ~ 10514807 (-)
prkci prkci,LOC107668962,LOC107659412,LOC107706387,LOC107738175,LOC107591345 other downstream 1041327 10311097 ~ 10345498 (-)
G140342 NA other downstream 1283368 10035403 ~ 10103457 (-)
LOC103044908 LOC103045223,LOC108413497,LOC105899383 other downstream 1672788 9697155 ~ 9714037 (-)
LOC103024234 slc25a36a,slc25a36,LOC108440632,LOC107668959,LOC107706334,LOC107694658,LOC107561809,LOC107561808 other downstream 2675726 8671024 ~ 8711099 (-)
G140772 fam134b other upstream 218009 11606235 ~ 11610529 (-)
G140975 NA other upstream 785469 12173695 ~ 12174994 (-)
G141020 NA other upstream 960333 12348559 ~ 12415155 (-)
LOC103027860 cacnb2b,LOC108437228,LOC107664070,LOC107713974,LOC107751551,LOC107585874 other upstream 1084578 12472804 ~ 12572147 (-)
G141220 NA other upstream 1927665 13315891 ~ 13316365 (-)

Expression


Co-expression Network