trnad-guc_16


Basic Information

Item Value
gene id trnad-guc_16
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 11755528 ~ 11755599 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>trnad-guc_16
TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGACGGGGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnad-guc_16 True 72 tRNA 0.63 1 11755528 11755599

Neighbor

gene id symbol gene type direction distance location
rnf182 rnf182 coding downstream 182315 11568053 ~ 11573213 (-)
ranbp9 ranbp9,LOC107556766,LOC107664064 coding downstream 187607 11532828 ~ 11567921 (-)
epdr1 epdr1,LOC107664036,LOC107558964,LOC108437243,LOC108267170,LOC107713986 coding downstream 235491 11514923 ~ 11520037 (-)
stard3nl stard3nl coding downstream 242062 11498055 ~ 11513466 (-)
LOC111194197 NA coding downstream 367302 11386825 ~ 11388226 (-)
LOC103027519 NA coding upstream 64260 11819859 ~ 11832264 (-)
LOC103031742 NA coding upstream 189827 11945426 ~ 11968401 (-)
LOC103032062 NA coding upstream 219149 11974748 ~ 12050443 (-)
LOC103032996 NA coding upstream 301236 12056835 ~ 12121276 (-)
LOC103028177 LOC108437218 coding upstream 828278 12583877 ~ 12589743 (-)
G140798 NA non-coding downstream 63425 11688552 ~ 11692103 (-)
G140748 NA non-coding downstream 224718 11474957 ~ 11530810 (-)
G140754 NA non-coding downstream 231566 11521460 ~ 11523962 (-)
G140708 NA non-coding downstream 267227 11328689 ~ 11488301 (-)
G140735 NA non-coding downstream 330401 11424165 ~ 11425127 (-)
G140822 NA non-coding upstream 51233 11806832 ~ 11807230 (-)
G140823 NA non-coding upstream 61245 11816844 ~ 11818965 (-)
G140825 NA non-coding upstream 79910 11835509 ~ 11836832 (-)
G140815 NA non-coding upstream 81578 11837177 ~ 11843218 (-)
G140882 NA non-coding upstream 172263 11927862 ~ 11930836 (-)
G140772 fam134b other downstream 144999 11606235 ~ 11610529 (-)
G140472 slc4a2,LOC108413474,LOC107718031 other downstream 1240721 10511089 ~ 10514807 (-)
prkci prkci,LOC107668962,LOC107659412,LOC107706387,LOC107738175,LOC107591345 other downstream 1410030 10311097 ~ 10345498 (-)
G140342 NA other downstream 1652071 10035403 ~ 10103457 (-)
LOC103044908 LOC103045223,LOC108413497,LOC105899383 other downstream 2041491 9697155 ~ 9714037 (-)
G140975 NA other upstream 418096 12173695 ~ 12174994 (-)
G141020 NA other upstream 592960 12348559 ~ 12415155 (-)
LOC103027860 cacnb2b,LOC108437228,LOC107664070,LOC107713974,LOC107751551,LOC107585874 other upstream 717205 12472804 ~ 12572147 (-)
G141220 NA other upstream 1560292 13315891 ~ 13316365 (-)
G141255 LOC108413406 other upstream 1681032 13436631 ~ 13438896 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) trnad-guc-396 NA coding NW_023494072.1 JAAXML020000604.1 65221 ~ 65292 (-)
eurasian perch (Perca fluviatilis) trnad-guc_29 NA non-coding NC_053135.1 CM020932.1 4202634 ~ 4202705 (-)
tiger barb (Puntius tetrazona) trnac-gca_87 NA coding NC_056709.1 CM032078.1 1145027 ~ 1145098 (-)