RNA id: trnad-guc_16


Basic Information

Item Value
RNA id trnad-guc_16
length 72
RNA type tRNA
GC content 0.63
exon number 1
gene id trnad-guc_16
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 11755528 ~ 11755599 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGACGGGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190650 lncRNA downstream 63425 11688552 ~ 11692103 (-) True G140798
TU190582 lncRNA downstream 224718 11474957 ~ 11530810 (-) True G140748
TU190592 lncRNA downstream 231566 11521460 ~ 11523962 (-) True G140754
TU190531 lncRNA downstream 267227 11328689 ~ 11488301 (-) True G140708
TU190561 lncRNA downstream 330401 11424165 ~ 11425127 (-) True G140735
TU190682 lncRNA upstream 51233 11806832 ~ 11807230 (-) True G140822
TU190683 lncRNA upstream 61245 11816844 ~ 11818965 (-) True G140823
TU190685 lncRNA upstream 79910 11835509 ~ 11836832 (-) True G140825
TU190670 lncRNA upstream 81578 11837177 ~ 11843218 (-) True G140815
TU190747 lncRNA upstream 172263 11927862 ~ 11930836 (-) True G140882
XM_022678015.1 mRNA downstream 182315 11568053 ~ 11573213 (-) True rnf182
XM_007232506.3 mRNA downstream 187607 11532828 ~ 11567921 (-) False ranbp9
XM_007232505.3 mRNA downstream 187607 11532828 ~ 11567921 (-) True ranbp9
XM_007232503.3 mRNA downstream 235491 11514923 ~ 11520037 (-) True epdr1
XM_007232501.3 mRNA downstream 242062 11498055 ~ 11513466 (-) True stard3nl
XM_007232513.3 mRNA upstream 64260 11819859 ~ 11832264 (-) True LOC103027519
XM_022678031.1 mRNA upstream 189827 11945426 ~ 11968401 (-) False LOC103031742
XM_022678030.1 mRNA upstream 189827 11945426 ~ 11967009 (-) True LOC103031742
XM_022677710.1 mRNA upstream 219149 11974748 ~ 12050443 (-) True LOC103032062
XM_022678032.1 mRNA upstream 301236 12056835 ~ 12121276 (-) True LOC103032996
TU190615 other downstream 144999 11606235 ~ 11610529 (-) True G140772
TU190197 other downstream 1240721 10511089 ~ 10514807 (-) True G140472
TU189989 other downstream 1655759 10068500 ~ 10099769 (-) True G140342
TU189985 other downstream 1655759 10098168 ~ 10099769 (-) False G140342
TU189726 other downstream 2041491 9709289 ~ 9714037 (-) False LOC103044908
TU190884 other upstream 418096 12173695 ~ 12174994 (-) True G140975
TU190937 other upstream 592960 12348559 ~ 12363493 (-) True G141020
TU190939 other upstream 592960 12348559 ~ 12363493 (-) False G141020
TU191049 other upstream 733100 12488699 ~ 12544939 (-) False LOC103027860
TU191050 other upstream 733100 12488699 ~ 12572147 (-) False LOC103027860

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) trnad-guc-396 True 72 mRNA 0.61 1 NW_023494072.1 65221 ~ 65292 (-)
eurasian perch (Perca fluviatilis) unassigned_transcript_1558 True 72 tRNA 0.63 1 NC_053135.1 4202634 ~ 4202705 (-)
tiger barb (Puntius tetrazona) unassigned_transcript_1558 True 72 tRNA 0.57 1 NC_056709.1 1145027 ~ 1145098 (-)