LOC103038167 (LOC108437250)


Basic Information

Item Value
gene id LOC103038167
gene name LOC108437250
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 11110129 ~ 11113394 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007233041.3
CAGACGCGGGCGAGCCCACAAAACGAAGAGTTCGACTAAGTGTCGTTCAGTGCTTCATTTGGCGTATTTGAGAGCGCGCGGGGATCGCGGCGGCGCTTCCTTTGATTTACTACGCAACTACCATTTGGCGGGAAACGCCACAGCGGTGGCGCATTGATACCTCGGGTGAAGCAGCACGAAAATCCGTAGTATTAAAACGCGCTGTTGGAAAATTCTGCAGTAAATGAAATCACAGCCGCGCTgagggaagaggaggagaggtgCCGCCGCTGcaggagaagaaggagaggaagGCGTGAGCAAAAGCCGGCACTGCGGACTCCCACACTTTTGGATTACTTTCACTTGACAGCACTTGGCGACTGTTTTAACACGCTTACGCTGCGTTTTTGGATTCAGTGCTGATAAACGACTgtcagcagtagcagcagcatgCCGCTGAGCTCAGGCATGGCGAGCAGTAAGAACTACGACTACGACTACGACTCCTACCAGCCCTACTTCTACTACGACAACGAGGATGAGGGCTTCTACAGCCAGCAGCACAGTCAGCCGCAGCCCCCGGCTCCCAGCGAGGACATCTGGAAGAAGTTCGAGCTGCTGCCCACGCCCCCGCTCTCCCCCAGCCGGCGGCCGTCCCTCAGCGGCGGCAGCAGCCCGAGCACTAGCCCGTTCCCGTCCCGAGCGGACCAGCTGGAGATGGTCACGGAGTTTCTCGGGGACGACGTGGTGAACCACAGCTTTATCTGCGACGCGGACTACTCGCAGTCCTTCCTCAAGTCCATGATCATCCAGGACTGCATGTGGAGCGGCTTTTCCGCCGCGGCGAAGCTGGAGAAGGCGGTGTCGGAGCGGCTAGCCTCGCTGCAGGCTGCCCGCAGGGACGCGTCGAGGGGCGGGTCCACGGAGGACGCCGGCCCGGGGCGGCTGGGCTCTAACTTTGGCTATCTGCAGGACATGAACGCGTCCGCCACGGACTGTATAGACCCCTCTGTCGTGTTTCCCTACCCGCTGACGGACTGTACAAAGCTGGGCAGGGCGCCCACGCCGACTTTACCTCTGGATACTCCTCCAAACAgcgggagcagcagcagcagcgacaGTGACAGCGATGATGACGAagatgaggaggatgaggaggagattGACGTAGTGACAGTGGAAAAGAGAAAATCTGTGAAGAAGTCCGACCCCGTGGTGTTGAAGCGCTGTCATGTGAACATCCAGCAGCACAACTATGCAGCTCAGCCTAGCAGAGGGACTGAACAACCTGCTGTCAAGAGGCTTCGCTTCGAGGGAGGCAGGTCACTCCGGCAGTCCAGCCACAGTCACAAGACGTCCGACTCTGAGGACAACGACAAGCGCAGGACTCACAACGTGCTGGAGCGTCAGAGGAGGAACGAGCTGAAGCTGAGCTTCTTTGCTCTGAGGGACGAGATTCCAGACGTGGCGAACAATGAGCGGGCCGCCAAGGTAGTGATCCTGAAAAAAGCCACGGAGCACATCGCCAGCGTTCAGGCAGAGGAGCGGCGTCTCCTGTCTGTCAAAGAGCAGCTCAGGAGGAGGTGTGAACACTTAAAACACAGACTTGAGCAGTTAAGCAactcctgagctgctgctgctgcttatcTTCATGGACTTTTTTAAAGCCTTTTGGAAAGGTGTTGTAATGGATGCTCATGACTGTAATGAATGCCCCCTGGAGTGAAGGACATGATGTGGGCGGGGGCGGTCGACGGTGTCGGCACTGCATCACTGATGCAATCGGACTTTGATTTGTACCCTTAAAGCTGCCTCAGTCTGAAGCAGCTGAGGCTAtagatttatttgtatttaattttatttttagtaatgcCAGTCAGCAGTCTGTGTACTGTTGGTCTTAACTTAacgttttgtttttgtaaattttgtacatatttacacaGATGTATTGAAGATACTGTTGATTTGAATCATAAAAGTGTTTCTTTATATAAAAGGTGTTTGAATACA

Function

NR:

description
PREDICTED: transcriptional regulator Myc-B-like

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005488 binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007233041.3 True 1995 mRNA 0.55 3 11110129 11113394

Neighbor

gene id symbol gene type direction distance location
LOC103040378 NA coding downstream 643551 10447884 ~ 10466578 (-)
LOC103038916 dapk3,LOC103038916 coding downstream 684634 10413599 ~ 10425495 (-)
LOC103037547 NA coding downstream 715963 10371408 ~ 10394166 (-)
skil skil coding downstream 806601 10279552 ~ 10303528 (-)
LOC103032176 nadk,LOC108444346,LOC107557499,LOC107591341,LOC107738176,LOC107659414 coding downstream 842146 10250233 ~ 10267983 (-)
LOC103041893 ankh,ankhb,LOC108437249,LOC107713990,LOC107657429 coding upstream 13887 11127281 ~ 11176854 (-)
LOC103037030 NA coding upstream 70736 11184130 ~ 11197773 (-)
LOC111194197 NA coding upstream 273431 11386825 ~ 11388226 (-)
stard3nl stard3nl coding upstream 384661 11498055 ~ 11513466 (-)
epdr1 epdr1,LOC107664036,LOC107558964,LOC108437243,LOC108267170,LOC107713986 coding upstream 401529 11514923 ~ 11520037 (-)
LOC103038501 NA non-coding downstream 6791 10995257 ~ 11103338 (-)
G140609 NA non-coding downstream 38670 11070388 ~ 11071459 (-)
G140551 NA non-coding downstream 131045 10978751 ~ 10979084 (-)
G140542 NA non-coding downstream 194132 10915794 ~ 10915997 (-)
LOC111194196 NA non-coding downstream 213415 10895763 ~ 10896714 (-)
G140618 NA non-coding upstream 1944 11115338 ~ 11189668 (-)
G140708 NA non-coding upstream 215295 11328689 ~ 11488301 (-)
G140725 NA non-coding upstream 264913 11378307 ~ 11403882 (-)
G140735 NA non-coding upstream 310771 11424165 ~ 11425127 (-)
G140748 NA non-coding upstream 361563 11474957 ~ 11530810 (-)
G140472 slc4a2,LOC108413474,LOC107718031 other downstream 595322 10511089 ~ 10514807 (-)
prkci prkci,LOC107668962,LOC107659412,LOC107706387,LOC107738175,LOC107591345 other downstream 764631 10311097 ~ 10345498 (-)
G140342 NA other downstream 1006672 10035403 ~ 10103457 (-)
LOC103044908 LOC103045223,LOC108413497,LOC105899383 other downstream 1396092 9697155 ~ 9714037 (-)
LOC103024234 slc25a36a,slc25a36,LOC108440632,LOC107668959,LOC107706334,LOC107694658,LOC107561809,LOC107561808 other downstream 2399030 8671024 ~ 8711099 (-)
G140772 fam134b other upstream 492841 11606235 ~ 11610529 (-)
G140975 NA other upstream 1060301 12173695 ~ 12174994 (-)
G141020 NA other upstream 1235165 12348559 ~ 12415155 (-)
LOC103027860 cacnb2b,LOC108437228,LOC107664070,LOC107713974,LOC107751551,LOC107585874 other upstream 1359410 12472804 ~ 12572147 (-)
G141220 NA other upstream 2202497 13315891 ~ 13316365 (-)

Expression


Co-expression Network