skil (skil)


Basic Information

Item Value
gene id skil
gene name skil
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 10279552 ~ 10303528 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015601593.2
GCGGAGGGAGCGCGGTGCTGTGGCTGAGCGAGAGGCACTGAGTCCCCGCAGAGCAAGAGAGCGGAGtccgggagagagagagcgcgcggaGAGACACGGAGCTCAGCGATACCGCGGGGGAAGAGCACACGGAGGACGGAGCGGCGGAAGCGGGTCTGGCGAAAGCTGAACAAACCACTGAGTTGTCCTTCACCATCATGTATGCATTTGGACAAATGAGGATTTATCATTTTTCATAAAgttcaaaacaataaaataccaaGTAAGTTGCAGTATTTGTTTAGGATAAACCCAGTGatattcttaaagaaaaaatggcCAGCACCCAGACCAGTATGAAAACCTCTTTCAAAGACCCAATTTCATTTAAGAACAGCATGAAAAGATTGTACCGGGAGAATCTTGAGGATGCGCCTATTAAGAAGCGAGTGATGGCGGAGATGAAGATGAAGCGGAGGGGTGGCCTGGACGTGCTGCCCAGGGGCGCAAAAGTAAAGCGGGAGCTGGATGAGTCACGTTGTGATGTGGATGCTGAGGGGCAGGAAGTGCATGATGGGAAGGCTTTGGATCTAAGTCCAGGGCTCAAACACACTTTAGCCCAATTTACCCTGAGCAGCCAGAGCTCTCTGGGTGGCCCAGCTGCTTTTTCAGCCAAAACAGCCCAAGAAGTGAGCCTCCCAGGCGGCATGGCACCTCTGCCCTCACCCTCGTTCCTGGGCGTTGGGCCTTTGCTGGTTCCCTCTGATAGTTCCACTGAGCTTACACACTCCATCCTGGAAGGAGAGTCTATTTCCTGCTTCGTAGTCGGCGGAGAAAAGCGACTTTGCCTTCCGCAGGTACTGAACTCGGTTTTGCGAGATTTCTCCTTGCAGCAGATTAATGCAGTTTGTGACGAGCTTTATGTTTACTGTTCCCGCTGTGATGCCGAGCAGCTGCACATACTCAAAGTTTTGGGGATTCTACCCTTTAATGCACCGTCTTGCGGCCTTATTACGCTGACGGATGCTCAGCGGCTCTGTAACGCCCTCCTGCGCCCCGGGACCGCGATACATGTCGAACAGTCTATGCTAAAAGCGAAAGACAGCGAGGCCGGGTTCCAGGTGGAGCACCAGTGCCTGGGGAAGTGCCAGGGCCTGTTTGTGCCGCAGTTTTACGTGCAGCCGGATGCGCCCTGCATACGCTGTATGGAGTGCCAGCTGCTTTTCTCGCCACAGAACTTTGTCATGCACTCTCACTGCTCACCAGACAAGAGAACCTGCCACTGGGGCTTCGACTCGGCCAAGTGGGCCTGCTACCTTCAACTCAGCCGCAGATACCAGGGAGCAGCCGAGGAGCCCAAACTCAGACAGCTGCTTGACGAGATGAAGAACAAATTTCACTCACCGACGCTGAAGAGGACACTGGACAAGaaagCGACAGATGATGATGGCCATATGAGGAAGCCCAGCCCTGACCTTTGCCCCTCCAGTGATAAGTTGTGTGATAAAGAGCTGGAGAAAAAGgctAAAGACCAGTCTGTGCTCGGGTTCAGTCATCTGTTTCCTGATATCAAAGAGGAGGCTGCCCATGCTCCCATCGTCCACCCCAGCTACTACCTGTACCCGTACGATAAGATGGTGGCTCCCAACGTGTCTCTGCAGAAGGATGGTGAGGTCGGAGCGGAGGTTCTTGGAGCGCTGCTGAAACAGCACTACAGCAGGAGAATACACAACCAGGACAACCAGCCTGATCTCCATGTGTCTTCCTCCTCCGTTGCCGGGGAGGTTAAATCCAGTCACCCAGGCGAAGCACCAGCCGTTGCCGTGGAGACGGTGTGCAGTAAGGAGGATGATAAGGAGCGAATCGTGCTGGACATAGTCCAGATGTACAGCAGACAGCAAGAGAAGCTCAACGCCACACTGCATCGGCAGCTGCAGCTCGAGACGGAGTTGGAGTCAGTGCGTGGAGGTGAGGCGGCCCAGCTGAGGCAGCTGTCAGCAGAGCACAGCGAGCTGCAGAGCGAGCTAGAGGCGGTTCACACTGAGCATGCTCAGAAGCTGGGGGAAGTGCGTCAGGAACAGAGGGACCTGGAGCGCAGGCTGGAGCAGCTCAGGCAGCAAGGCTGCACCTGTAAACCTAAAGCACAGGAGGAACAGTACACtgcacagCTGTGTGATCTGCGGTGTCGCTTAGAGCGTGCAGAGGCAGAGCGCCAGGAGCTGCAGGACGAATTACGACGGGAGCGCGAGGCGCGGGAGAAACTGGAGCTCATGATCACTCAGCTCCAGCATCAGATCATCCAGAATACCAGCAAGACCAACATGAGTCCACACAGCCAGAAGACACTCTCCTCTACTGCCCCGGCAACTACAGccagctaaacacacacacacacacacacatttgtgtgCCTGCAGCCTGTAAACCCTGCCCCCTCCCTCATCACCCCCACAAGCTGAGTCCCCGACACAAGCGAAATCAGCCCTGCTGGAAACGGGACCGGGACATGcgtgttccttttttttcttttcgcgTTTAAAAGACTTATAATTTAACACCatttaaaacatctattttatgTTGTCATGTCGTTTCCCAttcttacagtatttaaaacctttgtatgtgttttaatttatagttTTGCTAATAGGCTGCTTATTAAGGAAACAGGAGGGGATGCTTTGCCTCTGAACTGGACTAAAGACTGTGGGGCTGATTGGAAAcagaattaaatgttttaatcccACCGGTGGAGCTCCAAGgagtcaaaatgaacactgaaaCCAGTGCTTTGCTGTACACCAGCTCCAGcaggaaaaacatttttacctTCTAAAATGTTAAACTTCAGTGCAAAATGAAATGGTTGATGAAAAAAGGTCTGAAAGTGTACTAAAATGTCTGCGATGTGGAATTATCATCCTAAACATTGCAGTCATTGTGCTTTTTCATGAAGGTGAAAGCAAAACCCAAAGGCTGGAGGATGGAAGGGGCCTCTTTGAGAGGCCCGCTGGCTTCAGATGATAATCCTCCTTCTCcctcctttttttccccctccctccctcggCGCCTGCTGTCTGCTGGTGATTAGACGTTTCCTGGatgttttctttccttttagagctgcacacatgcacacgtgTGCCCTCTGCTGGACAAAaccagctgcagcagcagcgtcCGGATGATAGAGTGTTTAGTGTTGAGCCTCTTCACTAAAGCAGCTGAATGTGAATTGCAGCATTTAGTTGATCTTTTTGAGGAACAGTCAGAGcagaatgttttgttttttggcatCCCACAATACACACTGTTCCAAACGCACAGCAGGGTGAGCAAACGGGGGAGACTGAGGGCCCCCGGGGGCCACATTCATGAAATCACGCCTAAAAAATGAAAACCTTCTGTGCTTTTCCCACTTAAACTAACCTAAGATTTATTGTTCTTGATGGTTCTTCTTGacattttagtgtattttgGTTTTCCACAGTCACAGCTGTCAAATATGTTTCAAATCTGTCACGTTCAGGCGCACAGCAAATTAAACTGATGATAGCCTGGCACTGTTTATGATACTATAATCACTACATATTTAAGAAAATGATTAGGCCTGCTAGAAATGACAAACAATAATAAAGCTTAATTACGAGAGAATAA

Function

symbol description
skil Enables several functions, including DNA-binding transcription repressor activity, RNA polymerase II-specific; SMAD binding activity; and identical protein binding activity. Involved in several processes, including negative regulation of transforming growth factor beta receptor signaling pathway; positive regulation of axonogenesis; and skeletal muscle tissue development. Located in PML body and cytoplasm. Part of protein-containing complex.

NR:

description
PREDICTED: ski-like protein isoform X1

GO: NA

KEGG:

id description
K18499 SKIL; Ski-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015601593.2 True 3639 mRNA 0.51 8 10279552 10303528

Neighbor

gene id symbol gene type direction distance location
LOC103032176 nadk,LOC108444346,LOC107557499,LOC107591341,LOC107738176,LOC107659414 coding downstream 11569 10250233 ~ 10267983 (-)
LOC103033434 apoda.1,LOC103033434,LOC108444329,LOC107557469,LOC107706326,LOC107659367 coding downstream 86868 10188798 ~ 10192684 (-)
LOC103034406 elavl1,LOC103034406,LOC108444333,LOC105889513,LOC107684401,LOC108437281 coding downstream 119162 10152771 ~ 10160390 (-)
LOC103038251 prpf4b,LOC108267396,LOC107598186,LOC107670278,LOC107738454,LOC107554722,LOC106597319 coding downstream 417760 9850225 ~ 9861792 (-)
LOC103037289 myl12.2,LOC103037289,LOC107098295,LOC107732590,LOC107746904,LOC103135689 coding downstream 449399 9822515 ~ 9830153 (-)
LOC103037547 NA coding upstream 67880 10371408 ~ 10394166 (-)
LOC103038916 dapk3,LOC103038916 coding upstream 110071 10413599 ~ 10425495 (-)
LOC103040378 NA coding upstream 144356 10447884 ~ 10466578 (-)
LOC103038167 LOC108437250 coding upstream 806601 11110129 ~ 11113394 (-)
LOC103041893 ankh,ankhb,LOC108437249,LOC107713990,LOC107657429 coding upstream 823753 11127281 ~ 11176854 (-)
G140374 sec62 non-coding downstream 31087 10244974 ~ 10248465 (-)
G140380 NA non-coding downstream 42818 10235790 ~ 10236734 (-)
G140347 NA non-coding downstream 109853 10167859 ~ 10169699 (-)
G140354 NA non-coding downstream 127115 10149874 ~ 10152437 (-)
G140351 NA non-coding downstream 163369 10107711 ~ 10116183 (-)
G140479 NA non-coding upstream 217863 10521391 ~ 10524421 (-)
G140481 ubtfl,LOC108267581,LOC108437253 non-coding upstream 227641 10531169 ~ 10552536 (-)
G140484 NA non-coding upstream 254914 10558442 ~ 10558712 (-)
G140490 NA non-coding upstream 268254 10571782 ~ 10574918 (-)
G140491 NA non-coding upstream 269628 10573156 ~ 10590683 (-)
G140342 NA other downstream 176095 10035403 ~ 10103457 (-)
LOC103044908 LOC103045223,LOC108413497,LOC105899383 other downstream 565515 9697155 ~ 9714037 (-)
LOC103024234 slc25a36a,slc25a36,LOC108440632,LOC107668959,LOC107706334,LOC107694658,LOC107561809,LOC107561808 other downstream 1568453 8671024 ~ 8711099 (-)
G139706 LOC108438927,LOC107558100,LOC106569426 other downstream 3096769 7168965 ~ 7182783 (-)
LOC103041520 acin1,LOC106608850,LOC107591382 other downstream 3335418 6841980 ~ 6944134 (-)
prkci prkci,LOC107668962,LOC107659412,LOC107706387,LOC107738175,LOC107591345 other upstream 7569 10311097 ~ 10345498 (-)
G140472 slc4a2,LOC108413474,LOC107718031 other upstream 207561 10511089 ~ 10514807 (-)
G140772 fam134b other upstream 1302707 11606235 ~ 11610529 (-)
G140975 NA other upstream 1870167 12173695 ~ 12174994 (-)
G141020 NA other upstream 2045031 12348559 ~ 12415155 (-)

Expression


Co-expression Network