Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_022677704.1 |
| length | 4161 |
| RNA type | mRNA |
| GC content | 0.44 |
| exon number | 17 |
| gene id | prkci |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_035912.1 |
| NCBI id | CM008315.1 |
| chromosome length | 41032606 |
| location | 10311097 ~ 10345498 (-) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| species | mexican tetra (Astyanax mexicanus) |
| id | name | namespace |
|---|---|---|
| GO:0001738 | morphogenesis of a polarized epithelium | biological_process |
| GO:0007502 | digestive tract mesoderm development | biological_process |
| GO:0035556 | intracellular signal transduction | biological_process |
| GO:0042476 | odontogenesis | biological_process |
| GO:0048546 | digestive tract morphogenesis | biological_process |
| GO:0035050 | embryonic heart tube development | biological_process |
| GO:0000132 | establishment of mitotic spindle orientation | biological_process |
| GO:0045199 | maintenance of epithelial cell apical/basal polarity | biological_process |
| GO:0001841 | neural tube formation | biological_process |
| GO:0045217 | cell-cell junction maintenance | biological_process |
| GO:0006468 | protein phosphorylation | biological_process |
| GO:0034334 | adherens junction maintenance | biological_process |
| GO:0007097 | nuclear migration | biological_process |
| GO:0007405 | neuroblast proliferation | biological_process |
| GO:0021744 | dorsal motor nucleus of vagus nerve development | biological_process |
| GO:0060042 | retina morphogenesis in camera-type eye | biological_process |
| GO:0008078 | mesodermal cell migration | biological_process |
| GO:0016332 | establishment or maintenance of polarity of embryonic epithelium | biological_process |
| GO:0031226 | intrinsic component of plasma membrane | cellular_component |
| GO:0005829 | cytosol | cellular_component |
| GO:0005915 | zonula adherens | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005524 | ATP binding | molecular_function |
| GO:0005543 | phospholipid binding | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| GO:0004697 | protein kinase C activity | molecular_function |
| id | description |
|---|---|
| K06069 | PRKCI; atypical protein kinase C iota type |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU190047 | lncRNA | downstream | 62632 | 10244974 ~ 10248465 (-) | True | G140374 |
| TU190053 | lncRNA | downstream | 74363 | 10235790 ~ 10236734 (-) | True | G140380 |
| TU190000 | lncRNA | downstream | 141398 | 10168408 ~ 10169699 (-) | True | G140347 |
| TU189997 | lncRNA | downstream | 142258 | 10167859 ~ 10168839 (-) | False | G140347 |
| TU190012 | lncRNA | downstream | 158660 | 10149874 ~ 10152437 (-) | True | G140354 |
| TU190211 | lncRNA | upstream | 175893 | 10521391 ~ 10524421 (-) | True | G140479 |
| TU190213 | lncRNA | upstream | 185671 | 10531169 ~ 10552536 (-) | True | G140481 |
| TU190218 | lncRNA | upstream | 198221 | 10543719 ~ 10545389 (-) | False | G140481 |
| TU190214 | lncRNA | upstream | 201823 | 10547321 ~ 10552536 (-) | False | G140481 |
| TU190215 | lncRNA | upstream | 203171 | 10548669 ~ 10552536 (-) | False | G140481 |
| XM_015601593.2 | mRNA | downstream | 7569 | 10279552 ~ 10303528 (-) | True | skil |
| XM_007234362.3 | mRNA | downstream | 43114 | 10250233 ~ 10267983 (-) | True | LOC103032176 |
| XM_007234366.3 | mRNA | downstream | 118413 | 10188798 ~ 10192684 (-) | True | LOC103033434 |
| XM_007234369.3 | mRNA | downstream | 150707 | 10152771 ~ 10160390 (-) | True | LOC103034406 |
| XM_022677988.1 | mRNA | upstream | 25910 | 10371408 ~ 10394166 (-) | False | LOC103037547 |
| XM_022677989.1 | mRNA | upstream | 25910 | 10371408 ~ 10393809 (-) | True | LOC103037547 |
| XM_007236325.3 | mRNA | upstream | 68101 | 10413599 ~ 10425495 (-) | True | LOC103038916 |
| XM_022677991.1 | mRNA | upstream | 102386 | 10447884 ~ 10466578 (-) | True | LOC103040378 |
| XM_007233041.3 | mRNA | upstream | 764631 | 11110129 ~ 11113394 (-) | True | LOC103038167 |
| TU189989 | other | downstream | 211328 | 10068500 ~ 10099769 (-) | True | G140342 |
| TU189985 | other | downstream | 211328 | 10098168 ~ 10099769 (-) | False | G140342 |
| TU189726 | other | downstream | 597060 | 9709289 ~ 9714037 (-) | False | LOC103044908 |
| TU189125 | other | downstream | 3128314 | 7168965 ~ 7182783 (-) | True | G139706 |
| TU188974 | other | downstream | 3881752 | 6417385 ~ 6429345 (-) | False | G139587 |
| TU190197 | other | upstream | 165591 | 10511089 ~ 10514807 (-) | True | G140472 |
| TU190615 | other | upstream | 1260737 | 11606235 ~ 11610529 (-) | True | G140772 |
| trnad-guc_16 | other | upstream | 1410030 | 11755528 ~ 11755599 (-) | True | trnad-guc_16 |
| TU190884 | other | upstream | 1828197 | 12173695 ~ 12174994 (-) | True | G140975 |
| TU190937 | other | upstream | 2003061 | 12348559 ~ 12363493 (-) | True | G141020 |
