RNA id: TU190211


Basic Information

Item Value
RNA id TU190211
length 3010
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G140479
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 10521391 ~ 10524421 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTATTGATTCTGCACTGtcgacacacacatacagaaacatAGTGGTAGTGATACTGACAGACCTCAGCAGTCTCTCAGctcacctccctctctctcattctttctctttagCATAActcatacagaaacacacaaggTCACTTTTGCTTCACATTTGTGCGATCACTTCTTTCATTTGGCGTCAAGCAAAAGCAACTACACACAGTTTCTTCCGGCAAGTCTCAGAGTGATATATCGAAGGCACTACAAACGTGAGCTCAGGTGGCTGTAACACAAACGCTTCAGGCAGTAACAGTTACACAATTTACCAATAATCACACCTTTCTTTTCCTAGATTTAGAAAACAAATATTTGGATTATTTCAGCTGGAATGTCAGTGAATCATTCTTCCATTTACAAAGGAACACCAGTCTGCACTGTAatcattaattacattacattacagtacagcgCAAACATCCGTTCAGACCACCACTCATTAGTTCATTTCATTTCCAGTCAAACAACCGTTAAGTGCTTAATGTTTCAGGAAATACTTCTGAACAGGAGAATTGATACAAGCTGATGATCCACgtgcatacaaaaaaaaagtgaaaatgaaaacagtgtttgATGAACAGTTCTACAAAACACGGGACTCCTAACAGCCGTGCAAGAACTAGTACACCACAAAAAGTGCCAGACAAACAGAATTTAAACTTTACAAACTGCTGGTGATGTTCACCAATGTTTAACGTTAACCTTCATGAAACGTCATTAAAAGTGATAAAAATCTATAGTGTTATGTGGATGATGAGAAGCAGAAAGAACTTCAACTTCTAGGAATGAACTTTTAGTGATctagaaaaacagacagatgtgtgaaaatgaaatgtgaactctgaaacactgaacactgaaaaatCTCTCTGTATTCAGTTTCTGATGCTTACTGGTAAATACAcggacatgtcaaaagtcatgggacctcAGAGGACGGCTTGGGaaagcccacacctgtataagctatgagatgttatcttgtgtgggtatgtgtgagGTGGAACACTGGCTAAAGCAACATGGATTTTCTGCCTCTAAGAAAGGCCTGATAATGGATACCAGCAGTGCactgggtggtaatgattgtgactggtggtgtcCGGCTAGAAACGTCCATGCCAACCGACAAGCAATTCTCGCAGAAATCCcacccacattcaatgcaggaggccctAAAGGCATTTTGCATCATACTTTTTAGCTTCTATATTATACAGCAATACTAGTCCACGGCACGTGACaatacttttggcatgtcagtatatcAGTTTGATACTAAATATTTTGActggaaattaaataaaataaaagtccctcTCTGAAGTTTGCACAGCACCTTGACTTCACTTCTCACTTCTGCCCAGCCAAAGTTTTGCAAAATACGAAATCAGAAACACAAGAAGATAAATTACAAGAGATGAGACaaaattaaaaggtttaaaatgcATAGATGTTCTCTACTTCAACCTGTTACGCAAATAACAGAGTAAAATTCAGATATCAGCAtgttaaataaaagaatcagaTCATTACAGCTGTGCGAGGCTACTAGCTTAGCTGATTTGGAGGCCTttcattgttgtttctaaagcGCACATATTACAAAATTAATGACGACTAAAAAAACGTAAtctaataattaaaagaaagagagcagtAATCGGAATGGTGTACGCCATAGTCCCtgtttaaaatacagtttaatcaTCTGGACTACTTGGCAGTTCCCTTATCTTTGTCAGTTCTACACCTACAAACCATTAAAacactatttaaatatactctTATAGTTTTACAGCAACTTGTTTCAGTCTTGAGCATTCAGCTGATTGATTCAGCAGATATGCCTCTGCTGCTTTGCTGTGAATCTCTTAATTGTTCATTTCAGCAAAGCTGTGTGGCGTCGATATACAACAAACGCTGCAGCGGTCACAAACAGAACACAGAAACTTACACTCGCAAAAGCCAATATTTGGACTTTTTCCTATTTAGTGATTGGCTGATCTAGTTGCTGTATAGCAGCACTACCACAGCTTCGTAACACGCTggtattttaatacatttggttttaattatatatatcgATGACTGCATGGTGCAGTCCAAAGCtttgcatattattTGTCTCATACACACAGTCAAAaaagatgaaataaaaaaaaaacaggatcaCTCCTGTACAAAATAAGATCTGCTACTTTTACGCttttgtttagcttttttttttgagatattatGTAGTTGCTCAGTCTACATCATTTCATCTTGATTTATGTGAGATGGAAAAAACGGCATAGTAGCAAAAGCATACGACTGCATACGTCATAAAGTGCTTCGTGTGACATTATGAGCTACCTTGTGGAAATTGGGTCTCGCGTTCCACTTACAACACAAACAGACAAAGCTCACACTGCACAGGGACACTAAACatcttgaataataataataataataataaaaaaaaaaaaaacatattagaaGAAATATGCATAAGACCCATTTGCAACAGACATCCAGGGAACtgttaaatacacacataatatatagatatataaatatagttcttcaatcaataataaaaacaaccgTATTTGGAGACAAAGACAAAGCTTATAAAAATACTCTTAGGCAGGAACCTCGTGTTCTTCTAAGAGCAGGACTGCAGGGACCGATTTGGCACAGCCTTTAGTGAGATGACTTGTTGAGTGTAGAGTGTACATGTGTGTGATGTGGGACTGTGTTCCACAGCCAAGACCATGTCTGTGATTCTATCAGATTAGTGAGGATGAGCAATTATCTATCTTTGGGCCTTTTGGACAAAGAAGGGTGTGGAGTCAGTCAGTTTGGCCTGACcagcaaacaaaacaacagaaaaaaaagccgGACAGGGTTAAACTGGCATGTGCATCTCTGTGTACTCGTCTTGTCCCTCCCTGGTGTCGAACTTGGGCTCTGCATCCTCCGCGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190045 lncRNA downstream 175907 10311130 ~ 10345484 (-) False prkci
TU190047 lncRNA downstream 272926 10244974 ~ 10248465 (-) True G140374
TU190053 lncRNA downstream 284657 10235790 ~ 10236734 (-) True G140380
TU190000 lncRNA downstream 351692 10168408 ~ 10169699 (-) True G140347
TU189997 lncRNA downstream 352552 10167859 ~ 10168839 (-) False G140347
TU190213 lncRNA upstream 6748 10531169 ~ 10552536 (-) True G140481
TU190218 lncRNA upstream 19298 10543719 ~ 10545389 (-) False G140481
TU190214 lncRNA upstream 22900 10547321 ~ 10552536 (-) False G140481
TU190215 lncRNA upstream 24248 10548669 ~ 10552536 (-) False G140481
TU190221 lncRNA upstream 26208 10550629 ~ 10552536 (-) False G140481
XM_022677991.1 mRNA downstream 54813 10447884 ~ 10466578 (-) True LOC103040378
XM_007236325.3 mRNA downstream 95896 10413599 ~ 10425495 (-) True LOC103038916
XM_022677988.1 mRNA downstream 127225 10371408 ~ 10394166 (-) False LOC103037547
XM_022677989.1 mRNA downstream 127582 10371408 ~ 10393809 (-) True LOC103037547
XM_022677704.1 mRNA downstream 175893 10311097 ~ 10345498 (-) True prkci
XM_007233041.3 mRNA upstream 585708 11110129 ~ 11113394 (-) True LOC103038167
XM_022678008.1 mRNA upstream 602860 11127281 ~ 11176854 (-) True LOC103041893
XM_007239868.3 mRNA upstream 659709 11184130 ~ 11197773 (-) True LOC103037030
XM_007239869.3 mRNA upstream 659709 11184130 ~ 11195520 (-) False LOC103037030
XM_007239871.3 mRNA upstream 659709 11184130 ~ 11195519 (-) False LOC103037030
TU190197 other downstream 6584 10511089 ~ 10514807 (-) True G140472
TU189989 other downstream 421622 10068500 ~ 10099769 (-) True G140342
TU189985 other downstream 421622 10098168 ~ 10099769 (-) False G140342
TU189726 other downstream 807354 9709289 ~ 9714037 (-) False LOC103044908
TU189125 other downstream 3338608 7168965 ~ 7182783 (-) True G139706
TU190615 other upstream 1081814 11606235 ~ 11610529 (-) True G140772
trnad-guc_16 other upstream 1231107 11755528 ~ 11755599 (-) True trnad-guc_16
TU190884 other upstream 1649274 12173695 ~ 12174994 (-) True G140975
TU190937 other upstream 1824138 12348559 ~ 12363493 (-) True G141020
TU190939 other upstream 1824138 12348559 ~ 12363493 (-) False G141020

Expression Profile