copb2 (copb2,LOC107706339,LOC107567551,LOC107694662,LOC107583113,LOC107738120)


Basic Information

Item Value
gene id copb2
gene name copb2,LOC107706339,LOC107567551,LOC107694662,LOC107583113,LOC107738120
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 8038862 ~ 8060230 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677951.1
gtgtatcttactgtgtgtgtgtgtgagggagtgtgtgtgtccagCTGGAGCTTTAGTGAGCTGCggatacagcagcagcagcagatctgcGATTAGAAAGAGCGAAAACCCACTAAAAGCAGCAGAATGCCTCTGAGGCTGGACATCAAGCGCAAGCTCACGGCTCGGTCCGACCGTGTCAAGAGCGTGGACCTTCATCCCACGGAGCCATGGATGCTGGCCAGTCTGTACAACGGCAGCGTCTGCGTCTGGAACCATGAAACACAAACCTTGGTGAAGACGTTTGAAGTGTGCGACCTGCCAGTACGAGCCTCAAAGTTTGTGGCCAGGAAAAACTGGGTTATCACTGGAGCAGATGATATGCAGATTCGGGTTTTCAACTACAACACACTAGAACGGGTCCATATGTTCGAGGCTCATTCGGATTATATCCGCTGCATTGCTGTGCACCCCACCCAGCCCTACATCCTTACTAGTAGTGATGACATGCTGATTAAGCTGTGGGACTGGGAGAAGAAGTGGTCCTGTAGCCAGGTGTTTGAGGGCCACACACACTACGTCATGCAGATCGTCATCAACCCCAAAGACAACAACCAGTTTGCTAGTGCATCGCTGGACAGAACCATCAAGgtcTGGCAGCTGGGATCCTCGTCTCCTAACTTCACTCTGGAGGGTCATGAGAAAGGAGTGAACTGCATTGATTATTACAGTGGAGGAGATAAGCCTTATCTTATTTCTGGAGCTGATGACAGGCTGGTGAAGATTTGGGACTACCAGAATAAGACGTGTGTGCAGACTCTTGAAGGTCATGCTCAGAATGTATCATGTGTGAGCTTCCACCCAGAGCTGCCCATCATCGTCACAGGATCTGAGGATGGCACAGTACGTATCTGGCACTCCAGCACTTATCGACTGGAGAGCACACTGAACTACGGCATGGAGCGGGTGTGGTGTGTCTGTGGCCTGCGTGGCTCCAACAATGTGGCGTTAGGTTATGATGAGGGCAGCATCATTATCAAGCTTGGTCGTGAAGAGCCAGCCATGTCAATGGATACCAATGGAAAGATTATCTGGGCTAAGCACTCTGAGGTTCAGCAGGCTAACCTAAAGGCAATGGGGGATGCTGAGATTAAAGATGGAGAGAGGCTGCCTCTGGCTGTAAAAGACATGGGCAGCTGCGAGATCTACCCACAGACTATTCAACACAACCCTAATGGAAGgtttgtggtggtgtgtggagaTGGGGAGTACATCATCTACACAGCAATGGCTCTGAGGAACAAAAGCTTCGGCTCAGCTCAGGAGTTTGTCTGGGCCCACGACTCCTCAGAATATGCGATCAGAGAAAGCAACAGCTTGGTGAAAATCTTCAAGAACTTCAAGGAGAAGAAGTCTTTCAGGCCAGACTTTGGAGCTGAAGGTATCTATGGTGGATTTTTGCTGGGCGTCAGGTCTGTTAACGGTTTGGCCTTCTATGACTGGGAGAACACAGAGCTGATTCGACGCATTGAGATTCAACCCAAACATATCTTCTGGTCAGACTCTGGAGAGCTGGTGTGTATCGCCACTGAGGAGTCCTTCTTCATCCTGCGCTATCTGGCTGATAAAGTGGCTGCATCTCAAGAGTCTAATGAGGGAGTGACTGAAGATGGTATTGAAGATGCTTTTGAGgTTCAAGGTGAGATCCAGGAGATTGTAAAGACAGGTCTGTGGGTGGGAGACTGCTTCATCTACACAAGCTCTGTCAACAGGCTCAACTACTTTGTAGGAGGAGAGATTGTCACCATCGCCCACCTGGACAGGACTATGTACCTGCTGGGCTACATCCCTAAAGATGACCGACTGTACCTGGGAGACAAGGAGCTGAACATTGTTAGTTACTCTCTACTGGTGTCGGTTCTGGAGTACCAGACGGCGGTAATGCGGCGAGACTTTGGAATGGCCGATAAAGTACTTCCCACCATTCCAAAAGAGCAGAGGACCAGAGTGGCCCATTTTCTGGAGAAACAGGGCTTCAAGCAGCAGGCACTTGCTGTATCCACTGACCCAGAGCACAGATTTGAGCTTGCTCTGCAATTAGGAGAACTGAAGATCGCCTACCAATTAGCAGTAGAAGCAGAGTCTGAGCAGAAGTGGAAGCAGTTGGCTGAGCTGGCCATCAGCAAGTGCCAGTTTGGGCTGGCCCAGGAGTGCCTCCATCATGCCCAGGACTATGGTGGCTTGCTGCTGCTGGCCACCGCCTCCGGTAACGCTGCTATGGTGAGCAAACTGGCCGAAGGTGCCGAGCGCGATGGCAAGAACAACGTGGCCTTTATGACCTACTTCCTGCAGGGGAAATTGGACCAGTGTCTGGAACTCCTGATCAGGACCAATCGGTTGCCTGAGGCTGCCTTTTTGGCTCGCACGTATCTACCCAGCCAAGTGTCCAGAGTGGTGAAGCTGTGGAGAGAGAGCCTGTCTAAAGTAAACCAAAAGGCAGCCGAGTCTCTGGCCGACCCCACGGAGTACGAGAACCTGTTCCCTGGCCTGAAGGAGGCTTTTGTGGCCGAGCACTTTCTCCGTGAGACCTGCCTGGGCAAGACTAGACCGGCTACTGACTACCCACTGGTCACGcctaatGAGGAGCGGAACGTGTTGGAGGAAGCCAGTGGTTATGAGCCCAAAGGAGTTTTACCTACTCCACCACAGCAGGTAGACGACTCTGAGGAAGCTCCAGCAGAAGCAGGTGTCCTGGCCTCAGTCATGGCCGCAGTTTCAGCTCCTGTAGCCTCTGCAGTAGCTAGTTTTGCTCCTCCAGAGCCTGAACCTGTTAAAGAGCCAGAAGTGGACATCGAAGTAGGGGATGAACTGAAAGACAAGACTCTGGAGGAACTGGAAGACGACTTGGACAACATGGAGCTGGATGACATCGACACCACAGACGTCAACCTGGACGACGACTTCTTAGACGATTAAACCCCCGATACGGAAGCATTGAGTTTTATTTAAGAGACCAAGCCCTTTTGTACTTGTTCATGTCGTTTGTCATGCAGCTCCTCAAGCAGGAACAGGGATGTACGTCTGATGGGGACTGAGGTGAATATATGGCTCCCCTCAGGACCGTGAATGAAAAGATGTGGAGAATTATCTTGTCAGTTTAAAATTTTGTATTTCATGCAGGACCTCCAGCTGgttgtttcttcttctttttttttttccttcatccattcattaaagtgtatatttacattcatGTTTGTCTTACAATGTTAAACCAATCActcataaataaatatcaatttCAACTTC

Function

symbol description
copb2 Predicted to enable structural molecule activity. Acts upstream of or within notochord development and somite development. Predicted to be located in Golgi membrane and cytoplasmic vesicle. Predicted to be part of COPI vesicle coat. Is expressed in several structures, including axial mesoderm; cardiovascular system; digestive system; fin; and nervous system. Human ortholog(s) of this gene implicated in primary autosomal recessive microcephaly 19. Orthologous to human COPB2 (COPI coat complex subunit beta 2).

NR:

description
coatomer subunit beta' isoform X2

GO: NA

KEGG:

id description
K17302 COPB2, SEC27; coatomer subunit beta'

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677951.1 True 3288 mRNA 0.50 22 8038862 8060230

Neighbor

gene id symbol gene type direction distance location
LOC103046059 NA coding downstream 1470 8031023 ~ 8037392 (-)
prmt5 prmt5,LOC107694666,LOC107558089,LOC107668985 coding downstream 884971 7134726 ~ 7153891 (-)
LOC103044995 slc7a8a,LOC102238406,LOC107668787,LOC107753926,LOC103388347,LOC103475980,LOC108245892,LOC107377273 coding downstream 916103 7088631 ~ 7122759 (-)
LOC103044685 LOC108438930,LOC107738128,LOC107591391,LOC105021476,LOC106569429 coding downstream 956488 7046380 ~ 7082374 (-)
LOC103044081 NA coding downstream 998413 7034764 ~ 7040449 (-)
LOC103046363 LOC108442840 coding upstream 1500 8061730 ~ 8065229 (-)
rbp1 rbp1,LOC108442846 coding upstream 21686 8081916 ~ 8093129 (-)
nmnat3 nmnat3 coding upstream 37624 8097854 ~ 8123480 (-)
LOC103021520 spsb4a,LOC103021520,LOC108440634,LOC107583109,LOC108267127,LOC107706335,LOC107694659,LOC107561810 coding upstream 485260 8545490 ~ 8625989 (-)
LOC103022255 epha4,epha4a,LOC108440631,LOC107583108,LOC107668967,LOC107706332 coding upstream 926243 8986473 ~ 9067576 (-)
G139856 NA non-coding downstream 46284 7927095 ~ 7992578 (-)
G139852 carmil3 non-coding downstream 52094 7846496 ~ 7986768 (-)
G139855 NA non-coding downstream 134048 7902073 ~ 7904814 (-)
G139847 NA non-coding downstream 295500 7742978 ~ 7743362 (-)
G139840 NA non-coding downstream 311535 7705345 ~ 7727327 (-)
G139876 NA non-coding upstream 36737 8096967 ~ 8097748 (-)
G139891 NA non-coding upstream 161311 8221541 ~ 8247462 (-)
G139900 NA non-coding upstream 448801 8509031 ~ 8512618 (-)
G139924 NA non-coding upstream 605208 8665438 ~ 8668424 (-)
G139922 NA non-coding upstream 609110 8669340 ~ 8670612 (-)
G139706 LOC108438927,LOC107558100,LOC106569426 other downstream 856079 7168965 ~ 7182783 (-)
LOC103041520 acin1,LOC106608850,LOC107591382 other downstream 1094728 6841980 ~ 6944134 (-)
lamc1 lamc1,LOC107658363,LOC107563558,LOC107678923,LOC107557259,LOC107722047,LOC106599430 other downstream 1349139 6564903 ~ 6689723 (-)
G139587 NA other downstream 1608543 6417385 ~ 6430319 (-)
G139487 NA other downstream 1664153 6304969 ~ 6374709 (-)
LOC103024234 slc25a36a,slc25a36,LOC108440632,LOC107668959,LOC107706334,LOC107694658,LOC107561809,LOC107561808 other upstream 610794 8671024 ~ 8711099 (-)
LOC103044908 LOC103045223,LOC108413497,LOC105899383 other upstream 1636925 9697155 ~ 9714037 (-)
G140342 NA other upstream 1975173 10035403 ~ 10103457 (-)
prkci prkci,LOC107668962,LOC107659412,LOC107706387,LOC107738175,LOC107591345 other upstream 2250867 10311097 ~ 10345498 (-)
G140472 slc4a2,LOC108413474,LOC107718031 other upstream 2450859 10511089 ~ 10514807 (-)

Expression


Co-expression Network