LOC103021520 (spsb4a,LOC103021520,LOC108440634,LOC107583109,LOC108267127,LOC107706335,LOC107694659,LOC107561810)


Basic Information

Item Value
gene id LOC103021520
gene name spsb4a,LOC103021520,LOC108440634,LOC107583109,LOC108267127,LOC107706335,LOC107694659,LOC107561810
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 8545490 ~ 8625989 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228671.3
CTGCCTGTTCTTGATGAGAACAGAGAGGATTGCCTTTCCTTTCTTCAACATGAGGCAGTTGCTGCTGTTCCcatactgtctctctatctctatctctctttctctacctctctctatccctctattCTTCTGTacttctctacctctctctctctcactccctctctctctgagtgagtgAGCCTGAGGAGTTTGGGAGCGGGACAGCCACGGCGCGGATTAGCCCCCAGGGAGGGGGCTTCgggagggaggggagggggggtaaCATCCCGGGGGCAGGAGCTTTCTATTCTACCCCCCTCACCAGGggcagagagggagaaagaagggaggaggaagaaggagaagagaagCAGCGTGGTGGTTCTTTTCTTCCTGAGGAGAGCAGCTCGGATTTGCTTTATGCTCTTTCGTTCTTTCTTGGCTTCTGGAGTTCTGGACTTTGGGACAGGAGAGTGCGGACCACAGTGGACAGGACCCCCACAACTGGCGACTCAGAGGCTACGGAAAGCTGGCACCTGCCAGCCCCTGCCTAGTCGGAGGTGGCTCTCAGCCTGACATCCTGGCGCTTTGATGAGGTAACAGCAGGCGCCAGACGACCAACCCGTCCAGCTtagctccaccccctccccTTTCCCCTTTCCCCTTTCCTCCTACGCCGAGGGTCACCATGGGTCAGAAGATCTCGGGCAGCATCAAGTCGGTGGATGTACGGGGCGAACCCTCATACCGCCCGCTCCGGAGGGAGCTCCGTGGGCCGGACTTCTTCAAACCCGCCCGGTTGGACTTACTGCTGGACATGCCACCGGCACCCTATGAGCTGCAGCTGCGGCATGCCTGGAATGCCGACGATCGCTCGCTCAACATCTTTATCAAGGATGACGACAAATTGACCTTCCACAGGCACCCCGTGGCCCAGAGCACAGACTGTATCCGCGGGCGTGTGGGTTACACGCGTGGCCTCCATGTCTGGCGCATCCATTGGCCTTCCAGGCAAAGGGGCACGCATGCTGTAGTGGGTGTGGCCACTGCTGAGGCGCCCTTGCACTCGGTGGGGTACACATCCCTGGTGGGCAGCGACGGCGAGTCCTGGGGCTGGGACCTGGGCCGTAACAAGCTCTACCACAACAGCAAGAATCGCCCGGCCTCATCGTCGCCTACCTACCCTAGCTTCCTGGAGCCTGAAGAGGCCTTTGTGTTGCCCGACACCCTGGTGGTGGTGCTGGACATGGACGAGGGCACGCTCAGCTTTATGGTGGATGGACAGTATCTTGGCGTGGCCTTTAGAGGGCTTAAAGGAAAGAAGCTGTACCCTATCGTCAGTGCTGTTTGGGGACACTGTGAGATCACCATGCGATACATCAACGGATTAGATCCGGAACCCTTGCCTCTAATGGACCTGTGCCGGCGTGCGGCGCGGCTAGCCCTGGGCCGGGACCGGCTGCAGCAGATCGAGACACTGCCTCTGCCCCAGTCTCTGAAGAATTACCTCCAGTACCAATGAGCAGGACCTGGCGCATGCACACCCTCACGGACTCACTGGGAGCACCGGGCAGAGTTGCAGCTACTGTAGCACCGCTGCCAGGCCGCCGCGGGCGAAGGTTTACACTGAGAGCCGTGGCTACCTGGTGGACACTCGGAGTTGACTCGTTTCCTTCCCGTTCCTCCCGTTTCTTTTTGAGATTTTCCTGCTTTCTGTATGATTTCGTTAAATTATTGATGGTAGAAAAGGAGTAGAAGGACCTCAGTCTGCTGGTGTTGGACTGTGAAGGAGGTCAATGGGTCGCACCTTGGCGCTTGGGAAAGCAAACCAACCTTGGGATGCCTTGGAGAGCTTTGGAGTGATGCTCCAATATTCCAGAAGTTCCAGAAgtctggcagcagcagcagcagcttggaAGGCAAAGCTTTGGAAGGCTGCAGTCTGTAAGCTCTAGTTCTGGTTACACACAAAACTATTGGGGTACTATTGATAAAACCGACTGCTTATagttagggatgcactgaatgaAAATGTTCTTAGTTTTCCAATTGGGAATTGCatttaccaaataccaaactCACAACTAAAATATAGGCATTTCACTGTTACGATAACTATTTTTGTGTGTACAATTTATTGTTCCAGATATTATTTTGCGATAATCAATATTATTTCGCATCTTAAGACCATTTTATTCTGCTGAAGTAATgattaaatagcaaaaaaaaaaaaaacacaattgcaTAATTCTTAatagaaacttttttaaaagaaaatcaagagatccaaattcaaatattattattatttttgacaaTATCCCCTAAcagtaattttattaaataaaattaaattgctgtttttaaagaaatctGACCTTCTTTCAATCCATGCTAATGTGCTCTTCTTGCTAAGAAAATCATAATGGATGATCATAATGGTAAAATCgaattattgtttaatttaatttattgttcgataagtcgataatgtaataaTTCTGACAGGTCTACTAAAAGGGGTATCTTATCACAACTTAGTGGtataagctagctagctgctaGCTAGACTGCAACTACCTGagtgctagcttttttttttttaatagtcatAGGTCAACACTTCGTTTTTGGTTGataacaaacaaaattaaacatttggccCTTATTTTGCcacaaagtaacaaaaaaaaaaaaaaaaaaaacatttgtc

Function

symbol description
spsb4a Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be part of SCF ubiquitin ligase complex. Is expressed in brain; head; and reproductive system. Orthologous to human SPSB4 (splA/ryanodine receptor domain and SOCS box containing 4).

NR:

description
SPRY domain-containing SOCS box protein 4-like

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process

KEGG:

id description
K10343 SPSB1_4, SSB1, SSB4; SPRY domain-containing SOCS box protein 1/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228671.3 True 2695 mRNA 0.49 3 8545490 8625989

Neighbor

gene id symbol gene type direction distance location
nmnat3 nmnat3 coding downstream 422010 8097854 ~ 8123480 (-)
rbp1 rbp1,LOC108442846 coding downstream 452361 8081916 ~ 8093129 (-)
LOC103046363 LOC108442840 coding downstream 480261 8061730 ~ 8065229 (-)
copb2 copb2,LOC107706339,LOC107567551,LOC107694662,LOC107583113,LOC107738120 coding downstream 485260 8038862 ~ 8060230 (-)
LOC103046059 NA coding downstream 508098 8031023 ~ 8037392 (-)
LOC103022255 epha4,epha4a,LOC108440631,LOC107583108,LOC107668967,LOC107706332 coding upstream 360484 8986473 ~ 9067576 (-)
LOC103031272 NA coding upstream 512805 9138794 ~ 9141090 (-)
LOC103042138 puf60a,LOC108413493,LOC108267407,LOC107599879,LOC107657443 coding upstream 906834 9532823 ~ 9563587 (-)
LOC103042459 nrbp2a,nrbp2,LOC108413492,LOC108267406,LOC107733885,LOC107599881,LOC107657444 coding upstream 948351 9574340 ~ 9672214 (-)
bfsp2 bfsp2 coding upstream 1126675 9752664 ~ 9761502 (-)
G139900 NA non-coding downstream 32872 8509031 ~ 8512618 (-)
G139891 NA non-coding downstream 298028 8221541 ~ 8247462 (-)
G139876 NA non-coding downstream 447742 8096967 ~ 8097748 (-)
G139856 NA non-coding downstream 552912 7927095 ~ 7992578 (-)
G139852 carmil3 non-coding downstream 558722 7846496 ~ 7986768 (-)
G139924 NA non-coding upstream 39449 8665438 ~ 8668424 (-)
G139922 NA non-coding upstream 43351 8669340 ~ 8670612 (-)
G139941 NA non-coding upstream 119644 8745633 ~ 8749092 (-)
G139951 NA non-coding upstream 160971 8786960 ~ 8787401 (-)
G139967 NA non-coding upstream 334445 8960434 ~ 9036120 (-)
G139706 LOC108438927,LOC107558100,LOC106569426 other downstream 1362707 7168965 ~ 7182783 (-)
LOC103041520 acin1,LOC106608850,LOC107591382 other downstream 1601356 6841980 ~ 6944134 (-)
lamc1 lamc1,LOC107658363,LOC107563558,LOC107678923,LOC107557259,LOC107722047,LOC106599430 other downstream 1855767 6564903 ~ 6689723 (-)
G139587 NA other downstream 2115171 6417385 ~ 6430319 (-)
G139487 NA other downstream 2170781 6304969 ~ 6374709 (-)
LOC103024234 slc25a36a,slc25a36,LOC108440632,LOC107668959,LOC107706334,LOC107694658,LOC107561809,LOC107561808 other upstream 45035 8671024 ~ 8711099 (-)
LOC103044908 LOC103045223,LOC108413497,LOC105899383 other upstream 1071166 9697155 ~ 9714037 (-)
G140342 NA other upstream 1409414 10035403 ~ 10103457 (-)
prkci prkci,LOC107668962,LOC107659412,LOC107706387,LOC107738175,LOC107591345 other upstream 1685108 10311097 ~ 10345498 (-)
G140472 slc4a2,LOC108413474,LOC107718031 other upstream 1885100 10511089 ~ 10514807 (-)

Expression


Co-expression Network