LOC103042138 (puf60a,LOC108413493,LOC108267407,LOC107599879,LOC107657443)


Basic Information

Item Value
gene id LOC103042138
gene name puf60a,LOC108413493,LOC108267407,LOC107599879,LOC107657443
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 9532823 ~ 9563587 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677960.1
TCGTAAGTTAGACTGCGTGAGGTCAGAATGTCGCGATATTTCACAGTCTTCATTGCTGTGGTCCTCGCTCTGGAAGGTGTGCTGCATGGCGTCGGGGATTTTGTGAAGCTCTGTTTCGTAGAGAAACCTGCATCAGGACACCTTAGCGGAGACCAGGCGCTAGAGAGGCGAGGCTCTGACGATGGAGAATGGACAGAGCACAGCCTCAAAGCTTGGCCTGCCGCCTCTCACCCCTGAGCAGCAGGAGGCGCTGCAAAAGGCGAAAAAGTATGCCATGGAACAAAGCATCAAGAGTGTCCTGGTCAAACAGACGCTTgcccatcagcagcagcagcagctaaatAACCTTCAGCTCCCTAATTCCCTTCAGATGGCATCTTTAACCATGGCTGGATTTGGAGATCCTCTTTCACCCCTACAGTCTGTTGCGGCACAGAGGCAGCGGGCGCTGGCCATAATGTGCCGTGTTTACGTAGGCTCAATATACTATGAGCTTGGAGAAGACACCATTAGACAGGCCTTTGCTCCGTTTGGGCCTATCAAGAGCATTGACATGTCCTGGGATTCAGTTACACTGAAGCACAAGGGTTTTGCATTTGTAGAGTATGAGGTGCCAGAGGCAGCACAGCTGGCTTTAGAACAGATGAACTCTGTCATGCTAGGGGGAAGGAACATCAAGGTGGGAAGGCCAAGCAATATTGGTCAAGCCCAACCAATCATAGACCAGCTAGCAGAAGAAGCTCGAGCTTTCAACCGCATCTACGTAGCATCTGTACACCCAGACCTGTCAGATGAGGACATCAAGAGTGTTTTTGAAGCCTTTGGCAGAATCAAGTCCTGTACGCTTGCACGGGATCCTACGACAGGAAAACACAAGGGCTACGGCTTCATAGAATACGACAAGGCCCAGTCGGCACAGGATGCCGTTTCTTCAATGAACCTCTTCGACCTTGGTGGTCAGTACCTGCGAGTAGGCAAAGCGGTCACACCTCCCATCCCCCTGCTGACGCCGGCCACACCCGGTGGCCTGCCTCCTGCAGCCGCAGTAGCGGCTGCTGCAGCAACAGCCAAAATCACTGCTCAGATGGCATGGAATCTTTCCACTCCGGAGAATCGGACAGAAGACTTCCTCAACTGTCTGGAAGCGGTAGCGGGCGCATCAATCCTAGGGGCGATGACCGCGGGCTCTGTGACATTACCCCAGCAACTAAGTGGCCTACCTCAGGCCGTCATGGCAGCCCAAGCACCAGGGGTCATTACAGGCGTGACTCCCGCTCGGCCCGTTCTGCCCCAGGTGGGTCTGGTAAACCCAGTGCTGGCCTCTCCGCCGGTGATTTCTGCTGCAGTGGCTGCTGCCCAGGAAGCcaagaaggaaaaagaaaaggaggaggaagaagctGCTCAAGACGGCACGGGTCAAGAGATGCTCAGTGAACAGGAGCATATGAGCATCTCCGGCAGCAGCGCCAGACATATGGTCATGCAAAAACTGCTGAGAAAGCAGGAGTCGACAGTTATGGTGCTCAGAAATATGGTTGGGCCAGAGGATATAGATGACGACCTGGAGGGCGAAGTAACGGAAGAATGTGGCAAGTTTGGAGCAGTCAACAGAGTGATTATTTACCAGGAGAAGCAGGGCGAAGAGGAGGATGCTGAGGTCATTGTAAAAATCTTTGTGGAGTTTTCAGCAGCGTCTGAGATGAACAAGGCCATTCAGGCCCTCAATAATCGCTGGTTTGGAGGTCGTAAGGTTATTGCAGAGGTGTACGATCAGGAGCGGTTTGACAACAGCGACCTCTCTGCATAGACACGATCATCCGCCAGTTCTACGACCCTTTCCCTTGCTTCTGTCTCACACTTACAGAAACAGCTGCTGACCACTTCGCCAAGTGGCGTTGGCCTCTTTTTAacttgtaattattttttttatcgatgttgatattaatattattaatgattccTTTTCGGGACAAAGGCAAACAAATGCTTATGGATTTTTGTTCCTTCCCCTCCACTCTTGCCTACTGTGAAGGACTTTTTTTGGATGTGTTTTGTTTCCTCCTGCCCCACCCAAGTAATTTTGATTGGTTGCAACACTTTTCTGTAATAAAGCCCTTGGTTTCAAATAGCCTGAAcaataaattctttaaatatCACATGTTCTGCAGCCACTCCCCTGAActccaaaaaatgttttcatatcTGTGAAGTTTCaccattaaaatgtgttttattaaaaaa
>XM_022677961.1
CGCTCTGGAAGGTGTGCTGCATGGCGTCGGGGATTTTGTGAAGCTCTGTTTCGTAGAGAAACCTGCATCAGGACACCTTAGCGGAGACCAGGCGCTAGAGAGGCGAGGCTCTGACGATGGAGAATGGACAGAGCACAGCCTCAAAGCTTGGCCTGCCGCCTCTCACCCCTGAGCAGCAGGAGGCGCTGCAAAAGGCGAAAAAGTATGCCATGGAACAAAGCATCAAGAGTGTCCTGGTCAAACAGACGCTTgcccatcagcagcagcagcagctaaatAACCTTCAGCTCCCTAATTCCCTTCAGATGGCATCTTTAACCATGGCTGGATTTGGAGATCCTCTTTCACCCCTACAGTCTGTTGCGGCACAGAGGCAGCGGGCGCTGGCCATAATGTGCCGTGTTTACGTAGGCTCAATATACTATGAGCTTGGAGAAGACACCATTAGACAGGCCTTTGCTCCGTTTGGGCCTATCAAGAGCATTGACATGTCCTGGGATTCAGTTACACTGAAGCACAAGGGTTTTGCATTTGTAGAGTATGAGGTGCCAGAGGCAGCACAGCTGGCTTTAGAACAGATGAACTCTGTCATGCTAGGGGGAAGGAACATCAAGGTGGGAAGGCCAAGCAATATTGGTCAAGCCCAACCAATCATAGACCAGCTAGCAGAAGAAGCTCGAGCTTTCAACCGCATCTACGTAGCATCTGTACACCCAGACCTGTCAGATGAGGACATCAAGAGTGTTTTTGAAGCCTTTGGCAGAATCAAGTCCTGTACGCTTGCACGGGATCCTACGACAGGAAAACACAAGGGCTACGGCTTCATAGAATACGACAAGGCCCAGTCGGCACAGGATGCCGTTTCTTCAATGAACCTCTTCGACCTTGGTGGTCAGTACCTGCGAGTAGGCAAAGCGGTCACACCTCCCATCCCCCTGCTGACGCCGGCCACACCCGGTGGCCTGCCTCCTGCAGCCGCAGTAGCGGCTGCTGCAGCAACAGCCAAAATCACTGCTCAGATGGCATGGAATCTTTCCACTCCGGAGAATCGGACAGAAGACTTCCTCAACTGTCTGGAAGCGGTAGCGGGCGCATCAATCCTAGGGGCGATGACCGCGGGCTCTGTGACATTACCCCAGCAACTAAGTGGCCTACCTCAGGCCGTCATGGCAGCCCAAGCACCAGGGGTCATTACAGGCGTGACTCCCGCTCGGCCCGTTCTGCCCCAGGTGGGTCTGGTAAACCCAGTGCTGGCCTCTCCGCCGGTGATTTCTGCTGCAGTGGCTGCTGCCCAGGAAGCcaagaaggaaaaagaaaaggaggaggaagaagctGCTCAAGACGGCACGGGTCAAGAGATGCTCAGTGAACAGGAGCATATGAGCATCTCCGGCAGCAGCGCCAGACATATGGTCATGCAAAAACTGCTGAGAAAGCAGGAGTCGACAGTTATGGTGCTCAGAAATATGGTTGGGCCAGAGGATATAGATGACGACCTGGAGGGCGAAGTAACGGAAGAATGTGGCAAGTTTGGAGCAGTCAACAGAGTGATTATTTACCAGGAGAAGCAGGGCGAAGAGGAGGATGCTGAGGTCATTGTAAAAATCTTTGTGGAGTTTTCAGCAGCGTCTGAGATGAACAAGGCCATTCAGGCCCTCAATAATCGCTGGTTTGGAGGTCGTAAGGTTATTGCAGAGGTGTACGATCAGGAGCGGTTTGACAACAGCGACCTCTCTGCATAGACACGATCATCCGCCAGTTCTACGACCCTTTCCCTTGCTTCTGTCTCACACTTACAGAAACAGCTGCTGACCACTTCGCCAAGTGGCGTTGGCCTCTTTTTAacttgtaattattttttttatcgatgttgatattaatattattaatgattccTTTTCGGGACAAAGGCAAACAAATGCTTATGGATTTTTGTTCCTTCCCCTCCACTCTTGCCTACTGTGAAGGACTTTTTTTGGATGTGTTTTGTTTCCTCCTGCCCCACCCAAGTAATTTTGATTGGTTGCAACACTTTTCTGTAATAAAGCCCTTGGTTTCAAATAGCCTGAAcaataaattctttaaatatCACATGTTCTGCAGCCACTCCCCTGAActccaaaaaatgttttcatatcTGTGAAGTTTCaccattaaaatgtgttttattaaaaaa
>XM_022677962.1
TCGTAAGTTAGACTGCGTGAGGTCAGAATGTCGCGATATTTCACAGTCTTCATTGCTGTGGTCCTCGCTCTGGAAGGTGTGCTGCATGGCGTCGGGGATTTTGTGAAGCTCTGTTTCGTAGAGAAACCTGCATCAGGACACCTTAGCGGAGACCAGGCGCTAGAGAGGCGAGGCTCTGACGATGGAGAATGGACAGAGCACAGCCTCAAAGCTTGGCCTGCCGCCTCTCACCCCTGAGCAGCAGGAGGCGCTGCAAAAGGCGAAAAAGTATGCCATGGAACAAAGCATCAAGAGTGTCCTGGTCAAACAGACGCTTgcccatcagcagcagcagcagctaaatAACCTTCAGCTCCCTAATTCCCTTCAGATGGCATCTTTAACCATGGCTGGATTTGGAGATCCTCTTTCACCCCTACAGTCTGTTGCGGCACAGAGGCAGCGGGCGCTGGCCATAATGTGCCGTGTTTACGTAGGCTCAATATACTATGAGCTTGGAGAAGACACCATTAGACAGGCCTTTGCTCCGTTTGGGCCTATCAAGAGCATTGACATGTCCTGGGATTCAGTTACACTGAAGCACAAGGGTTTTGCATTTGTAGAGTATGAGGTGCCAGAGGCAGCACAGCTGGCTTTAGAACAGATGAACTCTGTCATGCTAGGGGGAAGGAACATCAAGGTGGGAAGGCCAAGCAATATTGGTCAAGCCCAACCAATCATAGACCAGCTAGCAGAAGAAGCTCGAGCTTTCAACCGCATCTACGTAGCATCTGTACACCCAGACCTGTCAGATGAGGACATCAAGAGTGTTTTTGAAGCCTTTGGCAGAATCAAGTCCTGTACGCTTGCACGGGATCCTACGACAGGAAAACACAAGGGCTACGGCTTCATAGAATACGACAAGGCCCAGTCGGCACAGGATGCCGTTTCTTCAATGAACCTCTTCGACCTTGGTGGTCAGTACCTGCGAGTAGGCAAAGCGGTCACACCTCCCATCCCCCTGCTGACGCCGGCCACACCCGGTGGCCTGCCTCCTGCAGCCGCAGTAGCGGCTGCTGCAGCAACAGCCAAAATCACTGCTCAGGAAGCGGTAGCGGGCGCATCAATCCTAGGGGCGATGACCGCGGGCTCTGTGACATTACCCCAGCAACTAAGTGGCCTACCTCAGGCCGTCATGGCAGCCCAAGCACCAGGGGTCATTACAGGCGTGACTCCCGCTCGGCCCGTTCTGCCCCAGGTGGGTCTGGTAAACCCAGTGCTGGCCTCTCCGCCGGTGATTTCTGCTGCAGTGGCTGCTGCCCAGGAAGCcaagaaggaaaaagaaaaggaggaggaagaagctGCTCAAGACGGCACGGGTCAAGAGATGCTCAGTGAACAGGAGCATATGAGCATCTCCGGCAGCAGCGCCAGACATATGGTCATGCAAAAACTGCTGAGAAAGCAGGAGTCGACAGTTATGGTGCTCAGAAATATGGTTGGGCCAGAGGATATAGATGACGACCTGGAGGGCGAAGTAACGGAAGAATGTGGCAAGTTTGGAGCAGTCAACAGAGTGATTATTTACCAGGAGAAGCAGGGCGAAGAGGAGGATGCTGAGGTCATTGTAAAAATCTTTGTGGAGTTTTCAGCAGCGTCTGAGATGAACAAGGCCATTCAGGCCCTCAATAATCGCTGGTTTGGAGGTCGTAAGGTTATTGCAGAGGTGTACGATCAGGAGCGGTTTGACAACAGCGACCTCTCTGCATAGACACGATCATCCGCCAGTTCTACGACCCTTTCCCTTGCTTCTGTCTCACACTTACAGAAACAGCTGCTGACCACTTCGCCAAGTGGCGTTGGCCTCTTTTTAacttgtaattattttttttatcgatgttgatattaatattattaatgattccTTTTCGGGACAAAGGCAAACAAATGCTTATGGATTTTTGTTCCTTCCCCTCCACTCTTGCCTACTGTGAAGGACTTTTTTTGGATGTGTTTTGTTTCCTCCTGCCCCACCCAAGTAATTTTGATTGGTTGCAACACTTTTCTGTAATAAAGCCCTTGGTTTCAAATAGCCTGAAcaataaattctttaaatatCACATGTTCTGCAGCCACTCCCCTGAActccaaaaaatgttttcatatcTGTGAAGTTTCaccattaaaatgtgttttattaaaaaa

Function

symbol description
puf60a Predicted to enable RNA binding activity. Predicted to be involved in alternative mRNA splicing, via spliceosome; mRNA splice site selection; and regulation of alternative mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Is expressed in central nervous system and pharynx. Orthologous to human PUF60 (poly(U) binding splicing factor 60).

NR:

description
PREDICTED: poly(U)-binding-splicing factor PUF60 isoform X1

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K12838 PUF60; poly(U)-binding-splicing factor PUF60

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677960.1 True 2241 mRNA 0.50 13 9532823 9562054
XM_022677961.1 False 2176 mRNA 0.50 13 9532823 9563587
XM_022677962.1 False 2184 mRNA 0.50 12 9532823 9562054

Neighbor

gene id symbol gene type direction distance location
LOC103031272 NA coding downstream 391733 9138794 ~ 9141090 (-)
LOC103022255 epha4,epha4a,LOC108440631,LOC107583108,LOC107668967,LOC107706332 coding downstream 465247 8986473 ~ 9067576 (-)
LOC103021520 spsb4a,LOC103021520,LOC108440634,LOC107583109,LOC108267127,LOC107706335,LOC107694659,LOC107561810 coding downstream 906834 8545490 ~ 8625989 (-)
nmnat3 nmnat3 coding downstream 1409343 8097854 ~ 8123480 (-)
rbp1 rbp1,LOC108442846 coding downstream 1439694 8081916 ~ 8093129 (-)
LOC103042459 nrbp2a,nrbp2,LOC108413492,LOC108267406,LOC107733885,LOC107599881,LOC107657444 coding upstream 10753 9574340 ~ 9672214 (-)
bfsp2 bfsp2 coding upstream 189077 9752664 ~ 9761502 (-)
LOC103037289 myl12.2,LOC103037289,LOC107098295,LOC107732590,LOC107746904,LOC103135689 coding upstream 258928 9822515 ~ 9830153 (-)
LOC103038251 prpf4b,LOC108267396,LOC107598186,LOC107670278,LOC107738454,LOC107554722,LOC106597319 coding upstream 286638 9850225 ~ 9861792 (-)
LOC103034406 elavl1,LOC103034406,LOC108444333,LOC105889513,LOC107684401,LOC108437281 coding upstream 589184 10152771 ~ 10160390 (-)
G140108 NA non-coding downstream 7611 9515315 ~ 9525212 (-)
G140114 NA non-coding downstream 26367 9477835 ~ 9506456 (-)
G140116 NA non-coding downstream 50553 9480887 ~ 9482270 (-)
G140029 NA non-coding downstream 80257 9452105 ~ 9452566 (-)
G140028 NA non-coding downstream 81092 9451460 ~ 9451731 (-)
G140135 NA non-coding upstream 26574 9590161 ~ 9591817 (-)
G140136 NA non-coding upstream 56722 9620309 ~ 9621212 (-)
G140137 NA non-coding upstream 58020 9621607 ~ 9638637 (-)
G140139 LOC108444165,LOC108425514 non-coding upstream 77135 9640722 ~ 9644394 (-)
G140122 NA non-coding upstream 82823 9646410 ~ 9648315 (-)
LOC103024234 slc25a36a,slc25a36,LOC108440632,LOC107668959,LOC107706334,LOC107694658,LOC107561809,LOC107561808 other downstream 821724 8671024 ~ 8711099 (-)
G139706 LOC108438927,LOC107558100,LOC106569426 other downstream 2350040 7168965 ~ 7182783 (-)
LOC103041520 acin1,LOC106608850,LOC107591382 other downstream 2588689 6841980 ~ 6944134 (-)
lamc1 lamc1,LOC107658363,LOC107563558,LOC107678923,LOC107557259,LOC107722047,LOC106599430 other downstream 2843100 6564903 ~ 6689723 (-)
G139587 NA other downstream 3102504 6417385 ~ 6430319 (-)
LOC103044908 LOC103045223,LOC108413497,LOC105899383 other upstream 133568 9697155 ~ 9714037 (-)
G140342 NA other upstream 471816 10035403 ~ 10103457 (-)
prkci prkci,LOC107668962,LOC107659412,LOC107706387,LOC107738175,LOC107591345 other upstream 747510 10311097 ~ 10345498 (-)
G140472 slc4a2,LOC108413474,LOC107718031 other upstream 947502 10511089 ~ 10514807 (-)
G140772 fam134b other upstream 2042648 11606235 ~ 11610529 (-)

Expression


Co-expression Network