G140139 (LOC108444165,LOC108425514)


Basic Information

Item Value
gene id G140139
gene name LOC108444165,LOC108425514
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 9640722 ~ 9644394 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU189708
tacttttactcaattaaaattttcagtacttttttcacCTCTTGTTATCAGACACATGAAAAAACTGTCATAAATTTGAATTAACAAGTTTTTTGACACCAAAGCTTGATGCTACAGATGGATTTTGTTGAAGGCTATTACAGTGTTCTGAACACAGTTCCTTTGTGCAAAAACTAAACCTGTATGATCTTCAGCGAAGACTGACTGCAATTCTGTCTTATCAATTAAACAAAACCGGCAGGAATAAGTTACACTGAAAGACTCAACAAAACCAAATATTCCATGTAATGCCAAATTATCAGCAGTAACTTGAATAACAGAACCTTTCAGTGGTGCATTTGAAAAAGGAACCTGGATTCCTTCAGTCTCCAAAATTCTTCTTTATAGACACCCTCTTCTTGGAGTTTTACTTGCTGAAAACTTTGACACAGCTCCTTGTTACTAAACATTGAATTAAGAGTTCCTAATATAGGTACATATGAGAATGTATCACTGACTGGATCCTGGCTGTTAGTACCAGTTTTGTTTTTACGTACATCAGAACGGACACCAAGAATATGCTGTACACTTTTGCTCAAAATACCTCTGTCTCTTAGTTTCAGTGTTCGTAAATGATAAGGATTTTCAAACTGATCAAAACAATCCTCAACTTTATCCAGTGCTTGTTTTGGTAAATCAACAGAAAGGCATTTTATCACTGCTTCCCTTGCCTGTGAATAGATATCATTTACAAGCTCCTCCATTAAACCAACCAAATATTCTACAGTGCTTTGAGGAATTCCAGATGCTTGCACCTGAGCAACAACAGAGCTACACACATCCAACTACTGTTTCAATAGCAAACTGTACTGTCACAGGATGTACCTCATTTACCGATTGTGAACCACAAGTTTCAATATTCTTATGAACCTCTAAATGGTCAACTTCTAAATGGTCAGAAACAGGCACTGTATGTACTCGCAacaagtgctttttaaaaccataatatgtacaaaaaaacagatgagcACCCTGGTTCTCCACACTTTAAACGTAATGAACGTCCAGGATATAAACAGTGCTCAAACTTCAAATGGCGAAATAAtaacaaactgtttttttggtGCACTCTGCAGACAAAACAGGTCCACATTGTTCAGCAAAATAAAGGGTTTCAAAGGTCATGTCGAAGAAGCGTCACTCAAATTTAGCCTTAGCCTTACCCAACGCTGTACACTGTGGTTTGGATGAGTGTAAAGAAGTTGATCAAGGCTTCATCATAGGAAAGTGTGCCTTGAAGAGCTCttcaaaaaaaaagctgcaacAGCGGTGTTTGCCTCACAAGGAACTGCTTTCTGGTCCAGGATGATGTAGTTGTGGATGCTGTTCTTATTTTCCCCAACACACAGAAGATAGGGCTGTGCTGATCCACTTTTCTTAAGAAAGGTCACCATGCTAGTTCCTTCCGAAAAGAAAAGACGACACACAAAGACATGACTTTAATTTTCATTACAAATTTTCTTCTGATTTAGTCATTCCAATTACCCAATCAACTCAAAAGGGACTCTTCTATCACATACAATCTAAACAAGAATGAAAACAAGCACATGCTTACTCCAATATATTGTTTCTTCCGCATATAAGATAAGTCTGTTGCTTGTACGTCATCACTAAGCAGCTGAACACACTGAAGAAAGCACCAGTTGCTCAGCTCGGATGCATCACCCACTAGTTGTGATGTTTGGAGGGTGCAACAACTACCCACCTAAAGAAAGCAAGAACAATTGTGCTTCTCACGTGTGAATTAGAGGGTATTGTTTTGCAGTCTGCAATTATCTTGGGCTTGTATATTGTTGGCCGCTTCGCAAGGAATCTGCCTGACACTTCCTCTCCAAACAGCAGAGTGAAATCCTGGGCAACCTAAATTCAACAAggttttatattcattttctgACTTTTCTGACATGATGGAAATTACAAAATATACTTACCAAGCCAGTTGTATCTAGAAATCGAGGGCAGAGGTCTAAGATGACTGAAGTCTTCTCTGGATCATGAACAAGTTTCTACCTGTGCTTGAATGTAGCTTTCATTTTGTCCTTAACCAGTGTTTTGTCAGCTGAGTGGTTCATCAGGGACATGGCCTCTTTGCATTTATCACCAGATAACTGCTCTCCACAACCAGGTATCTCACGATGGGTCTTTGGGCCTCCTTTGTAACTGGATGTACTTccgctctttctctcacttgctGAGTTGCGCTGAACTGTTTTCAGTCTCCAGGCCAGGTAACCAGACCCACTTTGAGGATCATAGAAGTGCTCCTGTTaaataaagttttcttttttttaaagcttgatAGGACCATGTACTAACCACACGTGCATTTTTGTTCAATAATAGCCTTACGTAgccatttaataataatagcattaaataattttaaaaatatttatatgcgAAGTATACACTGGTATAACTTTTATAAAATGAATTTTTGCTGGCCGTGCATGGTTCAAGTTTAACTATTCTTACGGTTATATCCCGACAATACATGAGAGAGTCAGGTAGCAAACTAGCtagttttaaggtggaagtatGGCGAGCAGTAACAATTCACACGCACACTTAACAAAAACAGAACTACTGCACATTAACAGCTGTTTGTAGTAATTTAAGGGTTTCTACTGAAAAGGTGCATTTATTGTACTCTTACCTTGGATATATAAAGAATCTTATTCCAGAAGCCTTGCCAGAGAGAACTCTCCTCCTCAAAAGTGTGGGGGAAAAATGGCGCCGATGCAGTTTGAATAAGATGAAAACGAGCGTGGCTCCTTTCTACACTGTAGAGAGTTAATTGGTCTTAACACCGGAATTTTTCACCGACTCTGATCTAAACTAACAACGGACAGTGTGATATTGTGTTTGTACAGCCTTAAAATAACACCAACACTAGCAATTAAACCCCAAGTCTTGCACACACAGATGAATGTTTTAGTTAACATAGGTCatacgtgtgtgtgtacgtacatgtatgtgtgtacaCATGTTAGTTTAAGTGCATAGGGGACAGGAGATGACCGCAGTTACATAACAGTTCAAACCACACAGAGCACTCAGCCAGCCCAGAATttccactacacacacacacactcagagaaagagagagcaagagagagagaatgagattacATAAAATCCCAGTTAGTTTTTTCCACCACAATCTAATCTGTGTATAATCTGGACCTATTCCAGCTCTGTGCTCTACAGCTGATGGTCTAACAGAAGGGTATGAGTGAAGAGTGTGGGGTATGGTTGAGGAGTATGGGTCAAGGGTATATGGAGATGTATGAGGTATGGTTAAAGTTTATGGGGAGATGTATGAGGTATGGGGTAAGGGTATGGGGAGAGGTATGAGG

Function

NR:

description
PREDICTED: uncharacterized protein LOC108444165

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU189708 True 3398 lncRNA 0.39 2 9640722 9644394

Neighbor

gene id symbol gene type direction distance location
LOC103042138 puf60a,LOC108413493,LOC108267407,LOC107599879,LOC107657443 coding downstream 77135 9532823 ~ 9563587 (-)
LOC103031272 NA coding downstream 499632 9138794 ~ 9141090 (-)
LOC103022255 epha4,epha4a,LOC108440631,LOC107583108,LOC107668967,LOC107706332 coding downstream 573146 8986473 ~ 9067576 (-)
LOC103021520 spsb4a,LOC103021520,LOC108440634,LOC107583109,LOC108267127,LOC107706335,LOC107694659,LOC107561810 coding downstream 1014733 8545490 ~ 8625989 (-)
nmnat3 nmnat3 coding downstream 1517242 8097854 ~ 8123480 (-)
bfsp2 bfsp2 coding upstream 108270 9752664 ~ 9761502 (-)
LOC103037289 myl12.2,LOC103037289,LOC107098295,LOC107732590,LOC107746904,LOC103135689 coding upstream 178121 9822515 ~ 9830153 (-)
LOC103038251 prpf4b,LOC108267396,LOC107598186,LOC107670278,LOC107738454,LOC107554722,LOC106597319 coding upstream 205831 9850225 ~ 9861792 (-)
LOC103034406 elavl1,LOC103034406,LOC108444333,LOC105889513,LOC107684401,LOC108437281 coding upstream 508377 10152771 ~ 10160390 (-)
LOC103033434 apoda.1,LOC103033434,LOC108444329,LOC107557469,LOC107706326,LOC107659367 coding upstream 544404 10188798 ~ 10192684 (-)
G140137 NA non-coding downstream 2085 9621607 ~ 9638637 (-)
G140136 NA non-coding downstream 19510 9620309 ~ 9621212 (-)
G140135 NA non-coding downstream 48905 9590161 ~ 9591817 (-)
G140132 NA non-coding downstream 97945 9538375 ~ 9542777 (-)
G140108 NA non-coding downstream 115510 9515315 ~ 9525212 (-)
G140122 NA non-coding upstream 2016 9646410 ~ 9648315 (-)
G140140 NA non-coding upstream 21254 9665648 ~ 9670587 (-)
G140146 NA non-coding upstream 48102 9692496 ~ 9692814 (-)
G140138 NA non-coding upstream 61415 9705809 ~ 9706535 (-)
G140181 NA non-coding upstream 133883 9778277 ~ 9779566 (-)
LOC103024234 slc25a36a,slc25a36,LOC108440632,LOC107668959,LOC107706334,LOC107694658,LOC107561809,LOC107561808 other downstream 929623 8671024 ~ 8711099 (-)
G139706 LOC108438927,LOC107558100,LOC106569426 other downstream 2457939 7168965 ~ 7182783 (-)
LOC103041520 acin1,LOC106608850,LOC107591382 other downstream 2696588 6841980 ~ 6944134 (-)
lamc1 lamc1,LOC107658363,LOC107563558,LOC107678923,LOC107557259,LOC107722047,LOC106599430 other downstream 2950999 6564903 ~ 6689723 (-)
G139587 NA other downstream 3210403 6417385 ~ 6430319 (-)
LOC103044908 LOC103045223,LOC108413497,LOC105899383 other upstream 52761 9697155 ~ 9714037 (-)
G140342 NA other upstream 391009 10035403 ~ 10103457 (-)
prkci prkci,LOC107668962,LOC107659412,LOC107706387,LOC107738175,LOC107591345 other upstream 666703 10311097 ~ 10345498 (-)
G140472 slc4a2,LOC108413474,LOC107718031 other upstream 866695 10511089 ~ 10514807 (-)
G140772 fam134b other upstream 1961841 11606235 ~ 11610529 (-)

Expression


Co-expression Network