G140138


Basic Information

Item Value
gene id G140138
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 9705809 ~ 9706535 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU189706
tttttactttttcaggaatcaggaaggtcagagtgttttcatcaacagtgagagctgtgaggagaacgtgaccctgagtggcagagaagcttcactgctgttctgggaccagtgcatatgaactaggagacaagctatctgagtgaagtgctgggaacctctcctcagatagcCAGCGCATGCCTGTTCTACACGCCGTAAAGTCGCACAGGCCAGAAGATCTTTCCATCCACTCTTTTCCACTGTTTCatcttctcacagactttaggacacttaaggactgtctgctgtgttcatgaaggacacagagctgaacaacatcatgataagaacctgttgctcagacaggctggagcgGATCACGTCATTGGAACTGGACAACAAACTGTTTACTGGACTCTGCTGACGTAATCATATGATAAGTTCTGTCCAATCACATGTCATTTGCaaaatgtataactgcttggatgaagtctgaggagttctctctgtccctcgactggctttagtttctttctctttctttctctctctctctctctctctctctctctctctctctctctttctctctctctctctttctctctctgggttgcgAATGTGATGATCTATCGAGATTGTATTcgttgatgtacttttactcttttctaatatatatcttttaatttttgttccttttatatatctgtaatgctgaaa

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU189706 True 702 lncRNA 0.43 2 9705809 9706535

Neighbor

gene id symbol gene type direction distance location
LOC103042459 nrbp2a,nrbp2,LOC108413492,LOC108267406,LOC107733885,LOC107599881,LOC107657444 coding downstream 33595 9574340 ~ 9672214 (-)
LOC103042138 puf60a,LOC108413493,LOC108267407,LOC107599879,LOC107657443 coding downstream 142222 9532823 ~ 9563587 (-)
LOC103031272 NA coding downstream 564719 9138794 ~ 9141090 (-)
LOC103022255 epha4,epha4a,LOC108440631,LOC107583108,LOC107668967,LOC107706332 coding downstream 638233 8986473 ~ 9067576 (-)
LOC103021520 spsb4a,LOC103021520,LOC108440634,LOC107583109,LOC108267127,LOC107706335,LOC107694659,LOC107561810 coding downstream 1079820 8545490 ~ 8625989 (-)
bfsp2 bfsp2 coding upstream 46129 9752664 ~ 9761502 (-)
LOC103037289 myl12.2,LOC103037289,LOC107098295,LOC107732590,LOC107746904,LOC103135689 coding upstream 115980 9822515 ~ 9830153 (-)
LOC103038251 prpf4b,LOC108267396,LOC107598186,LOC107670278,LOC107738454,LOC107554722,LOC106597319 coding upstream 143690 9850225 ~ 9861792 (-)
LOC103034406 elavl1,LOC103034406,LOC108444333,LOC105889513,LOC107684401,LOC108437281 coding upstream 446236 10152771 ~ 10160390 (-)
LOC103033434 apoda.1,LOC103033434,LOC108444329,LOC107557469,LOC107706326,LOC107659367 coding upstream 482263 10188798 ~ 10192684 (-)
G140146 NA non-coding downstream 12995 9692496 ~ 9692814 (-)
G140140 NA non-coding downstream 35222 9665648 ~ 9670587 (-)
G140122 NA non-coding downstream 57494 9646410 ~ 9648315 (-)
G140139 LOC108444165,LOC108425514 non-coding downstream 61415 9640722 ~ 9644394 (-)
G140137 NA non-coding downstream 67172 9621607 ~ 9638637 (-)
G140181 NA non-coding upstream 71742 9778277 ~ 9779566 (-)
G140182 NA non-coding upstream 75528 9782063 ~ 9782425 (-)
G140186 NA non-coding upstream 83473 9790008 ~ 9794211 (-)
G140214 NA non-coding upstream 114769 9821304 ~ 9821961 (-)
LOC111194301 NA non-coding upstream 141046 9847581 ~ 9849546 (-)
LOC103024234 slc25a36a,slc25a36,LOC108440632,LOC107668959,LOC107706334,LOC107694658,LOC107561809,LOC107561808 other downstream 994710 8671024 ~ 8711099 (-)
G139706 LOC108438927,LOC107558100,LOC106569426 other downstream 2523026 7168965 ~ 7182783 (-)
LOC103041520 acin1,LOC106608850,LOC107591382 other downstream 2761675 6841980 ~ 6944134 (-)
lamc1 lamc1,LOC107658363,LOC107563558,LOC107678923,LOC107557259,LOC107722047,LOC106599430 other downstream 3016086 6564903 ~ 6689723 (-)
G139587 NA other downstream 3275490 6417385 ~ 6430319 (-)
G140342 NA other upstream 328868 10035403 ~ 10103457 (-)
prkci prkci,LOC107668962,LOC107659412,LOC107706387,LOC107738175,LOC107591345 other upstream 604562 10311097 ~ 10345498 (-)
G140472 slc4a2,LOC108413474,LOC107718031 other upstream 804554 10511089 ~ 10514807 (-)
G140772 fam134b other upstream 1899700 11606235 ~ 11610529 (-)
G140975 NA other upstream 2467160 12173695 ~ 12174994 (-)

Expression


Co-expression Network