LOC110508661 (LOC106599266)


Basic Information

Item Value
gene id LOC110508661
gene name LOC106599266
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 18316616 ~ 18354743 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966800.1
AACAGCATAACCTTCTGGTCAGAGGAGGGATTGTGCTGTGTAGGCTACACACCCTTCGGTTTGACCTAAACGCGCTGTGACAGCTCGAGTGTTTCAGTGGCGAAAAAAAGTTATACAATTACCAAGAAATAATTGGAAAAGTTCACTGCGGGCCAATTAATGGGGCTTGTCCAGGGCTTCTGCACCGCAACCCTGGAGCGAGTTCACATACACAGCCTACAAAACCTCAGGGTTTTTTGATCAACTGAATAAAGGAAAGAGGCCATCAAAATGCTGCTAGAACTGGGATCCAATATTATGTCGTTGTATGAGTATTTATTGCAGAGAACGGACCACCGGTTGTTGCCCTACCCGTTGATGCGGACCCCCTTCCAGATGACCAGCATCCTGTTGGGCTATGTGTTCTTCTCGCTGTATGCAGGGCCTCGCCTGATGGTACACCGCAAGCCCTATCACCTCAAATCAGCCATGATCGTCTATAACTTCAGCATGGTGTTCCTCAATGCCTTCCTTGTCTATGAGTTCCTGATGTCAGGATGGGGCACCACCTTTACCTGGAGATGTGACCTTTGTGACTACTCAAGCAGCCCACAGGCTCTAAGGATGGTTCGAGTGGCTTGGTGGTTTTACTTCTCTAAATTCATCGAGCTTCTGGACACATTATTCTTTGTGCTGCCAGGGGGAATGAGCTCGTTCCATGCCATGGTCAACGCATGTGTCCACGTCATCATGTACACCTACTACGGCCTGTCCGCTGCAGGACCTCGCTTCCAGAAATACCTCTGGTGGAAGAAGTACATGACCGCAATCCAGCTTATCCAGTTTGTGCTGATCTCACTTCACATCTCTCAATACTACTTCATGGAGAAGTGTGACTTTCAGGTGCCCATGTTCATTCACCTCATCTGGATGTACGGAACCTTCTTCTTCGTACTCTTCTCCAACTTCTGGATTCAGGCCTACATAAAGGGTAAACGGCTGCCTACAGCCACCAAGGAGGCAAAGCTCAAGCAGAATGGCGTTACTAATGGTCATACCAACGGCATTACCATTGGCAACATTTCCGTGGTGCCCAACAGCAAACAAGTGGAGAATAGCAATGGGACAACAGCGCACCGTGTCAACGGCCATAACCAACTAGGCAAAGTGAAGGAAGTCTAGCTTTGTCATTTTGGACGGGGAAACATAACTGTCTGAGTGAGCCTCCAAAATGCCAAAGATTCCAAAACAATGCTACTCGTTCACATGTTAGCTACTGATCACTTTCctcaaatgtatattttttatatttatttacactGCTTTTGGGATATGAATGGCGTAATGGATTTACCAGTTGGTCCCTACTTGACACACTGTTAAATTTTGAGTGGTTGGAGGGAACTACTAACTGTAGATCACACTGTATGAAGAGGTGTTCATCCTCACTATTATTCACCTCCAACCCAGTTTTGAAATGACCAATGAAAGCCCACCCTTGGACTTTAACTTCTTGTTTGGCTGGCATGACTCCTGTGTTGCTTGAAAATATTGTAGTTTCCACTGAAAGGACTGGAACATGCTTGTAAATGGCTGACCCAGGTCTCTTTCAAAGAGATGGGATTTGTATTGATGTCCATCATGGTTTTGTTTTTTGGTGCTGTTTATATTTAACTTTTtttgaaataaaacacattttaagtAA
>XM_036966795.1
ACAGCATAACCTTCTGGTCAGAGGAGGGATTGTGCTGTGTAGGCTACACACCCTTCGGTTTGACCTAAACGCGCTGTGACAGCTCGAGTGTTTCAGTGGCGAAAAAAAGTTATACAATTACCAAGAAATAATTGGAAAAGTTCACTGCGGGCCAATTAATGGGGCTTGTCCAGGGCTTCTGCACCGCAACCCTGGAGCGAGTTCACATACACAGCCTACAAAACCTCAGGGTTTTTTGATCAACTGAATAAAGGAAAGAGGCCATCAAAATGCTGCTAGAACTGGGATCCAATATTATGTCGTTGTATGAGTATTTATTGCAGAGAACGGACCACCGGTTGTTGCCCTACCCGTTGATGCGGACCCCCTTCCAGATGACCAGCATCCTGTTGGGCTATGTGTTCTTCTCGCTGTATGCAGGGCCTCGCCTGATGGTACACCGCAAGCCCTATCACCTCAAATCAGCCATGATCGTCTATAACTTCAGCATGGTGTTCCTCAATGCCTTCCTTGTCTATGAGTTCCTGATGTCAGGATGGGGCACCACCTTTACCTGGAGATGTGACCTTTGTGACTACTCAAGCAGCCCACAGGCTCTAAGGATGGTTCGAGTGGCTTGGTGGTTTTACTTCTCTAAATTCATCGAGCTTCTGGACACATTATTCTTTGTGCTGCGTAAGAAACACAGCCAGATTACATTTCTTCATGTCTTCCATCACTCCTTCATGCCCTTCACGTGGTGGTGGGGTATGACCATCGCTCCTGCAGGGGGAATGAGCTCGTTCCATGCCATGGTCAACGCATGTGTCCACGTCATCATGTACACCTACTACGGCCTGTCCGCTGCAGGACCTCGCTTCCAGAAATACCTCTGGTGGAAGAAGTACATGACCGCAATCCAGCTTATCCAGTTTGTGCTGATCTCACTTCACATCTCTCAATACTACTTCATGGAGAAGTGTGACTTTCAGGTGCCCATGTTCATTCACCTCATCTGGATGTACGGAACCTTCTTCTTCGTACTCTTCTCCAACTTCTGGATTCAGGCCTACATAAAGGGTAAACGGCTGCCTACAGCCACCAAGGAGGCAAAGCTCAAGCAGAATGGCGTTACTAATGGTCATACCAACGGCATTACCATTGGCAACATTTCCGTGGTGCCCAACAGCAAACAAGTGGAGAATAGCAATGGGACAACAGCGCACCGTGTCAACGGCCATAACCAACTAGGCAAAGTGAAGGAAGTCTAGCTTTGTCATTTTGGACGGGGAAACATAACTGTCTGAGTGAGCCTCCAAAATGCCAAAGATTCCAAAACAATGCTACTCGTTCACATGTTAGCTACTGATCACTTTCctcaaatgtatattttttatatttatttacactGCTTTTGGGATATGAATGGCGTAATGGATTTACCAGTTGGTCCCTACTTGACACACTGTTAAATTTTGAGTGGTTGGAGGGAACTACTAACTGTAGATCACACTGTATGAAGAGGTGTTCATCCTCACTATTATTCACCTCCAACCCAGTTTTGAAATGACCAATGAAAGCCCACCCTTGGACTTTAACTTCTTGTTTGGCTGGCATGACTCCTGTGTTGCTTGAAAATATTGTAGTTTCCACTGAAAGGACTGGAACATGCTTGTAAATGGCTGACCCAGGTCTCTTTCAAAGAGATGGGATTTGTATTGATGTCCATCATGGTTTTGTTTTTTGGTGCTGTTTATATTTAACTTTTtttgaaataaaacacattttaagtAA
>XM_036966798.1
tgcgggGGAAAAGCTGTGGTGTACCTTGAACACACATGTATCATTTGAAACGACCTTTAACTACTTCAAGGGTTTTTTGATCAACTGAATAAAGGAAAGAGGCCATCAAAATGCTGCTAGAACTGGGATCCAATATTATGTCGTTGTATGAGTATTTATTGCAGAGAACGGACCACCGGTTGTTGCCCTACCCGTTGATGCGGACCCCCTTCCAGATGACCAGCATCCTGTTGGGCTATGTGTTCTTCTCGCTGTATGCAGGGCCTCGCCTGATGGTACACCGCAAGCCCTATCACCTCAAATCAGCCATGATCGTCTATAACTTCAGCATGGTGTTCCTCAATGCCTTCCTTGTCTATGAGTTCCTGATGTCAGGATGGGGCACCACCTTTACCTGGAGATGTGACCTTTGTGACTACTCAAGCAGCCCACAGGCTCTAAGGATGGTTCGAGTGGCTTGGTGGTTTTACTTCTCTAAATTCATCGAGCTTCTGGACACATTATTCTTTGTGCTGCGTAAGAAACACAGCCAGATTACATTTCTTCATGTCTTCCATCACTCCTTCATGCCCTTCACGTGGTGGTGGGGTATGACCATCGCTCCTGCAGGGGGAATGAGCTCGTTCCATGCCATGGTCAACGCATGTGTCCACGTCATCATGTACACCTACTACGGCCTGTCCGCTGCAGGACCTCGCTTCCAGAAATACCTCTGGTGGAAGAAGTACATGACCGCAATCCAGCTTATCCAGTTTGTGCTGATCTCACTTCACATCTCTCAATACTACTTCATGGAGAAGTGTGACTTTCAGGTGCCCATGTTCATTCACCTCATCTGGATGTACGGAACCTTCTTCTTCGTACTCTTCTCCAACTTCTGGATTCAGGCCTACATAAAGGGTAAACGGCTGCCTACAGCCACCAAGGAGGCAAAGCTCAAGCAGAATGGCGTTACTAATGGTCATACCAACGGCATTACCATTGGCAACATTTCCGTGGTGCCCAACAGCAAACAAGTGGAGAATAGCAATGGGACAACAGCGCACCGTGTCAACGGCCATAACCAACTAGGCAAAGTGAAGGAAGTCTAGCTTTGTCATTTTGGACGGGGAAACATAACTGTCTGAGTGAGCCTCCAAAATGCCAAAGATTCCAAAACAATGCTACTCGTTCACATGTTAGCTACTGATCACTTTCctcaaatgtatattttttatatttatttacactGCTTTTGGGATAT
>XM_036966799.1
ACGATACAGAGCAGTAGCCTATGGACAACTTCAGGGGTTTTTTGATCAACTGAATAAAGGAAAGAGGCCATCAAAATGCTGCTAGAACTGGGATCCAATATTATGTCGTTGTATGAGTATTTATTGCAGAGAACGGACCACCGGTTGTTGCCCTACCCGTTGATGCGGACCCCCTTCCAGATGACCAGCATCCTGTTGGGCTATGTGTTCTTCTCGCTGTATGCAGGGCCTCGCCTGATGGTACACCGCAAGCCCTATCACCTCAAATCAGCCATGATCGTCTATAACTTCAGCATGGTGTTCCTCAATGCCTTCCTTGTCTATGAGTTCCTGATGTCAGGATGGGGCACCACCTTTACCTGGAGATGTGACCTTTGTGACTACTCAAGCAGCCCACAGGCTCTAAGGATGGTTCGAGTGGCTTGGTGGTTTTACTTCTCTAAATTCATCGAGCTTCTGGACACATTATTCTTTGTGCTGCGTAAGAAACACAGCCAGATTACATTTCTTCATGTCTTCCATCACTCCTTCATGCCCTTCACGTGGTGGTGGGGTATGACCATCGCTCCTGCAGGGGGAATGAGCTCGTTCCATGCCATGGTCAACGCATGTGTCCACGTCATCATGTACACCTACTACGGCCTGTCCGCTGCAGGACCTCGCTTCCAGAAATACCTCTGGTGGAAGAAGTACATGACCGCAATCCAGCTTATCCAGTTTGTGCTGATCTCACTTCACATCTCTCAATACTACTTCATGGAGAAGTGTGACTTTCAGGTGCCCATGTTCATTCACCTCATCTGGATGTACGGAACCTTCTTCTTCGTACTCTTCTCCAACTTCTGGATTCAGGCCTACATAAAGGGTAAACGGCTGCCTACAGCCACCAAGGAGGCAAAGCTCAAGCAGAATGGCGTTACTAATGGTCATACCAACGGCATTACCATTGGCAACATTTCCGTGGTGCCCAACAGCAAACAAGTGGAGAATAGCAATGGGACAACAGCGCACCGTGTCAACGGCCATAACCAACTAGGCAAAGTGAAGGAAGTCTAGCTTTGTCATTTTGGACGGGGAAACATAACTGTCTGAGTGAGCCTCCAAAATGCCAAAGATTCCAAAACAATGCTACTCGTTCACATGTTAGCTACTGATCACTTTCctcaaatgtatattttttatatttatttacactGCTTTTGGGATAT
>XM_036966797.1
TCAGCCTTTGGTTTAAATCTGGGTTGAATGAGTCCCAACACAGCTGTCTTCCCTCATAGCTGTAcacatttctctctctgactTAGTCTGCCTGAGCTTTCTGTGGCTATTTCTAGAAGGGTCATTGGTTGTTGCTCTCTTGGCCGTGTGCCTAAAGGCCTGAGGGTTTGGGGACAGTACTGAGGACAACTTAGTAGGGTTTTTTGATCAACTGAATAAAGGAAAGAGGCCATCAAAATGCTGCTAGAACTGGGATCCAATATTATGTCGTTGTATGAGTATTTATTGCAGAGAACGGACCACCGGTTGTTGCCCTACCCGTTGATGCGGACCCCCTTCCAGATGACCAGCATCCTGTTGGGCTATGTGTTCTTCTCGCTGTATGCAGGGCCTCGCCTGATGGTACACCGCAAGCCCTATCACCTCAAATCAGCCATGATCGTCTATAACTTCAGCATGGTGTTCCTCAATGCCTTCCTTGTCTATGAGTTCCTGATGTCAGGATGGGGCACCACCTTTACCTGGAGATGTGACCTTTGTGACTACTCAAGCAGCCCACAGGCTCTAAGGATGGTTCGAGTGGCTTGGTGGTTTTACTTCTCTAAATTCATCGAGCTTCTGGACACATTATTCTTTGTGCTGCGTAAGAAACACAGCCAGATTACATTTCTTCATGTCTTCCATCACTCCTTCATGCCCTTCACGTGGTGGTGGGGTATGACCATCGCTCCTGCAGGGGGAATGAGCTCGTTCCATGCCATGGTCAACGCATGTGTCCACGTCATCATGTACACCTACTACGGCCTGTCCGCTGCAGGACCTCGCTTCCAGAAATACCTCTGGTGGAAGAAGTACATGACCGCAATCCAGCTTATCCAGTTTGTGCTGATCTCACTTCACATCTCTCAATACTACTTCATGGAGAAGTGTGACTTTCAGGTGCCCATGTTCATTCACCTCATCTGGATGTACGGAACCTTCTTCTTCGTACTCTTCTCCAACTTCTGGATTCAGGCCTACATAAAGGGTAAACGGCTGCCTACAGCCACCAAGGAGGCAAAGCTCAAGCAGAATGGCGTTACTAATGGTCATACCAACGGCATTACCATTGGCAACATTTCCGTGGTGCCCAACAGCAAACAAGTGGAGAATAGCAATGGGACAACAGCGCACCGTGTCAACGGCCATAACCAACTAGGCAAAGTGAAGGAAGTCTAGCTTTGTCATTTTGGACGGGGAAACATAACTGTCTGAGTGAGCCTCCAAAATGCCAAAGATTCCAAAACAATGCTACTCGTTCACATGTTAGCTACTGATCACTTTCctcaaatgtatattttttatatttatttacactGCTTTTGGGATAT
>XM_036966796.1
TTGGTTTAAATCTGGGTTGAATGAGTCCCAACACAGCTGTCTTCCCTCATAGCTGTAcacatttctctctctgactTAGTCTGCCTGAGCTTTCTGTGGCTATTTCTAGAAGGTAATTTGATTCAACATTTTGAGGACTTCAAGGGAGAAACAAGACATTCTGGGACTAGCATTACACTTTTTCACAGAATCTCTCTTTTTGACTCCTCTGTTTTGCTGGGCCTGGCCCATTGTAGGGTCATTGGTTGTTGCTCTCTTGGCCGTGTGCCTAAAGGCCTGAGGGTTTGGGGACAGTACTGAGGACAACTTAGTAGGGTTTTTTGATCAACTGAATAAAGGAAAGAGGCCATCAAAATGCTGCTAGAACTGGGATCCAATATTATGTCGTTGTATGAGTATTTATTGCAGAGAACGGACCACCGGTTGTTGCCCTACCCGTTGATGCGGACCCCCTTCCAGATGACCAGCATCCTGTTGGGCTATGTGTTCTTCTCGCTGTATGCAGGGCCTCGCCTGATGGTACACCGCAAGCCCTATCACCTCAAATCAGCCATGATCGTCTATAACTTCAGCATGGTGTTCCTCAATGCCTTCCTTGTCTATGAGTTCCTGATGTCAGGATGGGGCACCACCTTTACCTGGAGATGTGACCTTTGTGACTACTCAAGCAGCCCACAGGCTCTAAGGATGGTTCGAGTGGCTTGGTGGTTTTACTTCTCTAAATTCATCGAGCTTCTGGACACATTATTCTTTGTGCTGCGTAAGAAACACAGCCAGATTACATTTCTTCATGTCTTCCATCACTCCTTCATGCCCTTCACGTGGTGGTGGGGTATGACCATCGCTCCTGCAGGGGGAATGAGCTCGTTCCATGCCATGGTCAACGCATGTGTCCACGTCATCATGTACACCTACTACGGCCTGTCCGCTGCAGGACCTCGCTTCCAGAAATACCTCTGGTGGAAGAAGTACATGACCGCAATCCAGCTTATCCAGTTTGTGCTGATCTCACTTCACATCTCTCAATACTACTTCATGGAGAAGTGTGACTTTCAGGTGCCCATGTTCATTCACCTCATCTGGATGTACGGAACCTTCTTCTTCGTACTCTTCTCCAACTTCTGGATTCAGGCCTACATAAAGGGTAAACGGCTGCCTACAGCCACCAAGGAGGCAAAGCTCAAGCAGAATGGCGTTACTAATGGTCATACCAACGGCATTACCATTGGCAACATTTCCGTGGTGCCCAACAGCAAACAAGTGGAGAATAGCAATGGGACAACAGCGCACCGTGTCAACGGCCATAACCAACTAGGCAAAGTGAAGGAAGTCTAGCTTTGTCATTTTGGACGGGGAAACATAACTGTCTGAGTGAGCCTCCAAAATGCCAAAGATTCCAAAACAATGCTACTCGTTCACATGTTAGCTACTGATCACTTTCctcaaatgtatattttttatatttatttacactGCTTTTGGGATAT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966800.1 False 1684 mRNA 0.45 8 18316616 18354743
XM_036966795.1 False 1773 mRNA 0.45 8 18316617 18354743
XM_036966798.1 False 1243 mRNA 0.47 8 18316863 18354372
XM_036966799.1 False 1208 mRNA 0.47 8 18317480 18354372
XM_036966797.1 False 1370 mRNA 0.47 9 18350102 18354372
XM_036966796.1 True 1487 mRNA 0.47 8 18350109 18354372

Neighbor

gene id symbol gene type direction distance location
gs04 gs04 coding upstream 88226 18225312 ~ 18228390 (+)
LOC110508657 LOC106599258 coding upstream 329749 17867728 ~ 17986867 (+)
LOC118944855 NA coding upstream 491894 17813849 ~ 17824722 (+)
LOC110508652 LOC106599248 coding upstream 762629 17497781 ~ 17553987 (+)
LOC110508651 LOC106599247 coding upstream 827126 17480111 ~ 17489490 (+)
LOC110508663 LOC106599269 coding downstream 11346 18366089 ~ 18370884 (+)
LOC100136150 LOC105009935 coding downstream 51440 18406183 ~ 18420007 (+)
LOC110508667 LOC106599281 coding downstream 224720 18579463 ~ 18658560 (+)
LOC110508668 LOC106599284 coding downstream 318559 18673302 ~ 18724171 (+)
LOC110508669 LOC106599285 coding downstream 371511 18726254 ~ 18816586 (+)
G2112519 NA non-coding upstream 82210 18233827 ~ 18234406 (+)
G2112517 NA non-coding upstream 86534 18229850 ~ 18230082 (+)
G2112426 LOC106599262 non-coding upstream 206892 18108263 ~ 18109724 (+)
G2112396 NA non-coding upstream 233836 18080807 ~ 18082780 (+)
G2112390 NA non-coding upstream 241599 18074719 ~ 18075017 (+)
G2112763 NA non-coding downstream 41395 18396138 ~ 18396555 (+)
G2112765 NA non-coding downstream 74087 18428830 ~ 18435079 (+)
G2112958 NA non-coding downstream 190827 18545570 ~ 18545816 (+)
G2112960 NA non-coding downstream 191779 18546522 ~ 18546751 (+)
G2112964 NA non-coding downstream 197198 18551941 ~ 18552239 (+)
G2112127 NA other upstream 412692 17903198 ~ 17903924 (+)
G2111491 NA other upstream 561035 17754937 ~ 17755581 (+)
G2111457 NA other upstream 607987 17708256 ~ 17708629 (+)
G2111300 NA other upstream 900384 17411144 ~ 17416232 (+)
G2111044 NA other upstream 1357764 16953784 ~ 16958852 (+)
G2113059 NA other downstream 312372 18667115 ~ 18668496 (+)
G2113578 NA other downstream 721334 19076077 ~ 19076418 (+)
LOC110508695 LOC106599333 other downstream 1268725 19623468 ~ 19636825 (+)
G2115369 NA other downstream 2086990 20441733 ~ 20442169 (+)
LOC110508722 LOC106569260 other downstream 2485827 20840508 ~ 20842019 (+)

Expression


Co-expression Network