LOC110508985 (LOC106598838)


Basic Information

Item Value
gene id LOC110508985
gene name LOC106598838
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 32074971 ~ 32087594 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589918.2
GGCGCAACAACATGGACTTCCGGCCAGCTCACACATCGAGCTCCCCTCCAGCGCGTCAGAATTGACAGCAGAAGCTACGCAGCCAAGTTTATATGAAGTTTTGGCACAGCCAGTAAACACCTACAACCCAACCTGTAGTGTGAATTTGAGAGATTTCGGTCAATATGGTTTTGCTGACAATGATCGCTCGGGTAGCAGATGGACTGCCGCTTGCTGCATCGATGCAAGAAGACGAGCAGTCAGGAAGAGACTTGCAACACTACCAGAGCCAGGCTAAGCAGCTCTGCCGCAAACTCAATGCCCAGAGCCCCAACAGATGTACCCTGGAGGCTGGGGTCATGTCTTTCCACTATGTATTAGAACATGGCGTGTGCTACTTGGCCTTGTGCGAAGCCGTGTTTCCCAAGAAGCTGGTCTTTGGGTACCTGGAAGACCTCCAGACAGAATTCCATGAGCAGCATGGAAAGAAAGTCCCCACAGTCTCCAGGCCGTACTCTTTCATCGAGTTTGACACGTACATCCAGAAAACCAAAAAAAACTACATTGACAGCAGGGCACGGAGGAACCTGGGCAGCATCAACACAGAACTGCAGGATGTCCAGCGGATCATGGTGGCAAACATTGAAGAGGTCCTGCAACGAGGAGAGGCCCTATCAGCTCTCGACACCAAAGCCAGCAATCtgtccagcctttcaaagaaGTACCGCAGCGATGCCAAGTACCTCAACACCCGATCCACCTATGCCAAGATAGCAGCCGGGGCAGTCTTCTTCATTACACTTATTGTCTATGTGCGTTTCTGGTGGATCTGATGCGTAAGGACTGTGAAAGAGGAGATAGTCTGGGTTCCCTTTGTAACCAAATATTAAAACTGTCAATTGTAATATATTAATGGTTTCTGTTAACAGCAAAGCTTAAGTTCCTACATGGGTGCCTTAGGGGGAGGGTGGGACCTTGTACACGGGTGCCTTAGGGGGAGGGTGGGACCTTGTACACGGGTGCCTTAGGGGGAGGGTGGGACCTTGTACACGGGTGCCTTAGGGGGAGGGTGGGACCTTGTACACGGGTGCCTTAGGGGGAGGGTGGGACCTGGTCTGTGTACTGGATGAGTGGATGGACTCATGTCTGTTTCAGCTGTGTGTCATGTCGAATATCTGTATGGACACATACTGACCTGTTGTTCCTAATGTGAGCGAGGTGTAGCTTTCTGTGCATTCATAGTGTTTGTATAATCCCATTCGCTGGAGTATAAAAGGGATTGAAAATGTGTTAGCAATGTTTACATTACGAGGTGGAGGTTCTTTACCATGTCTCTGAAGGAAAATTCTATATGCAAATGGTCTTAAGTGTGAAACAACTTGTTACCGTGAGTTTATTGTTTACAAAACATACATAATTGTAAGTAATTATTTGTTCAAAGGTATATTTACTATCTTCTCAATGTTTATCAGAATAAAAAAATTGGAACACTA

Function

NR:

description
vesicle-trafficking protein SEC22b-B-like

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0048280 vesicle fusion with Golgi apparatus biological_process
GO:0015031 protein transport biological_process
GO:0033116 endoplasmic reticulum-Golgi intermediate compartment membrane cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0031201 SNARE complex cellular_component
GO:0005484 SNAP receptor activity molecular_function
GO:0000149 SNARE binding molecular_function

KEGG:

id description
K08517 SEC22; vesicle transport protein SEC22

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589918.2 True 1472 mRNA 0.47 5 32074971 32087594

Neighbor

gene id symbol gene type direction distance location
LOC110508983 LOC106598841 coding downstream 11518 32034823 ~ 32063453 (-)
LOC110508982 NA coding downstream 46536 32023057 ~ 32029225 (-)
LOC110508978 NA coding downstream 68881 32001255 ~ 32014890 (-)
LOC110508977 NA coding downstream 107904 31958284 ~ 31967067 (-)
LOC110508975 LOC106598852 coding downstream 120036 31952199 ~ 31954935 (-)
tsen15 tsen15 coding upstream 12709 32100303 ~ 32104711 (-)
LOC110508991 LOC106598834 coding upstream 32379 32119973 ~ 32129371 (-)
asip2b agrp2 coding upstream 69438 32062049 ~ 32187519 (-)
LOC110508994 LOC106598832 coding upstream 104208 32191802 ~ 32201824 (-)
LOC110508997 NA coding upstream 140831 32228406 ~ 32230258 (-)
G2128608 LOC106599183 non-coding downstream 139327 31935028 ~ 31935644 (-)
G2128580 NA non-coding downstream 152279 31922092 ~ 31922692 (-)
LOC110508996 NA non-coding upstream 153288 32240882 ~ 32243585 (-)
G2129021 NA non-coding upstream 180113 32267707 ~ 32268032 (-)
G2129038 NA non-coding upstream 209599 32297193 ~ 32297394 (-)
G2129041 NA non-coding upstream 217705 32305299 ~ 32305562 (-)
G2128568 NA other downstream 191831 31882715 ~ 31883140 (-)
LOC110508968 LOC106598866 other downstream 337479 31708667 ~ 31761665 (-)
G2128242 LOC106584167 other downstream 751607 31319283 ~ 31323364 (-)
G2128216 NA other downstream 830279 31244091 ~ 31244692 (-)
G2130393 NA other upstream 1310953 33398547 ~ 33399084 (-)
G2130771 LOC106598333 other upstream 1952612 34040206 ~ 34066665 (-)
G2130780 LOC106598333 other upstream 1953844 34041438 ~ 34068073 (-)
LOC110509052 LOC106598333 other upstream 1953975 34038788 ~ 34058344 (-)

Expression


Co-expression Network