LOC110508994 (LOC106598832)


Basic Information

Item Value
gene id LOC110508994
gene name LOC106598832
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 32191802 ~ 32201824 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966208.1
GTCTTTGCATAAACTAGctaaatggagagaaaaaaataaaagttAGCCAAAGTGTAATGATTTTGATCTAATAATTATTTTGTGACCACTCAAAGTAGGCTACAATAAAAGCATCGAGTGATAAATAAACCTATTTGAGTCGGATATTCACACTGAACTTTCTAATATGCTCGGCAGGAATTATCATGTTTACGTTAGCGTATCCGTCTGCCCATGCCCGGAAGGGGTCATTTTTCCGTCTTGTTTCGCTAGGATAATGCGGGAAGTGAGTGATTGACAATGCAGATGTTCTGTCCATGAACTTCATCTGGTATGCATACGTCGGTGATTCCAGAGAATCTGACCGGAATTTCTTAGTTTCTTTATCATCTACAGCTGTCAGGCATGCGGACTATCTTCTCCGATCTGTCCAGTATCCACATCTCCTTCTCCAAATCAGAGCAATTCGTTTCTAAAAGCCAGGGATAGGCTACAGTATAAGGTAAAGAGGTAAGATGGCCACCCCCTTTGTCCCAGTGCCTGTCCCCATGGAACGAACCCCGACCTGGCCAAAGAGGACCCCCCCCCTGGGTATTATCTCTAGCTCTGGCTTTTCACCTCCTGGAAAGTCCCCCTGGGTGAAGGCCACTGGGTCCTGGGGGGCCACGGTAGCCTGTCCGAGCCTCCCCCAGGCGTGTTCCAGCCCCGAGGGGTACAGGATATCcagaggaggggagcaggggtCGGTCCAGGAGGATGGTACTCCAGGGGACAGTTGGGAGAGGCCCCTCACCCCTTCCCTGCTGGGCTATGAGGTCATGGAGGAGAGGGCAAAGTTCACGGTGTATAAAATCTTGGTGAGAAGGAATGAGGAAGAGAACTGGGTGATCTTCAGAAGGTACACAGACTTCGCCAGACTCAACGATAAGCTTAAGGAGTTATTTCCCAGGTTCAGACTAGCCCTTCCACCCAAGCGCTGGTTCAAGGATAACTACGACATGGAGTTTCTGGAGGAGAGACAGTTAGGCCTACAAGCCTTCCTACAGAACCTCATAGCACACAGAGATCTCACCAACAGTGAAGCGGTCAGACAGTTCCTTTGTCTGGATGATCCGCCAGGCCCCTTTGACAGCCTGGAGGAGAGCAGGGCTTTCTGTGAGAcgctggaggagaccaaccaccGTCTACAGAGGGACCTGTCGGAGAAACAGCGAGAGATTGACTCTTTGAAAACAGCCCTGGATGAGAGACAGACCCACATTGGGCTCCTGGAGAAGAGAGTGAAtggtaAGTCCCCCAGCCCAGAGGGCCTTACTCCAGAGAGCAGCAGACTATCAGCCCTAGGCAGTGAGAACAGCTCTGACACAGACACTgccgcagacagacacagagacacagacggagaggcggacatagacacagacagggGATCATCCACTGCATTGGAGGCTGACCAGGAGACATGTCCTGAAAGAAGAAGCTCAGAAATCCAAGGGCCACTCAAGGGTCATGGGGCGTACTGGTCATCTGCGGCCATTGATTGTTCACCAGACGCTTTTATAAATTCAACAACTCCATAGAATGATGTGGAATTCTGCATTTGATTCTGACCTGGGACCTGGAAAAGTATATTATTCCAAGATGGACTGATGATGAGCTACGAGTGTATAGACTTCATGTACAGATTCTTGCTTGTAGTGACTGCGTTAATGGGTGATTGAAGTTTTcatataaggtgtgtgtgtgtgggtgggggggggggggggggggttgtgtgtctAAGGATTCTAGAAATATACTGTAGATGAGTATTGATTTCCAACACTTGTTCTGCTCTCATCTAATGCCTTGGTTGTAAAATAATCAAGTGAAGATATACTGCAATATGTGTCTAACTGCCTTACATCAATCTCTTTTCTACAAAGCtaagtactgtagtactgtactcAGGTTCTCCTCCCTGCGAAAAGCAATACTAATAAACTTGATTGATCTTAAAACG
>XM_021589926.2
TGCGAGTTTCCTAGTAGTATGTGAACGCGGCATCATACTGTAGAGGCGTGAATTGTCAGAGCTGTCCCACTGGATACAGATTgtaattcaacgtctattccacgttggttgtTGTGGAAACAACGTCAATTCAAACGCTGTCAGGCATGCGGACTATCTTCTCCGATCTGTCCAGTATCCACATCTCCTTCTCCAAATCAGAGCAATTCGTTTCTAAAAGCCAGGGATAGGCTACAGTATAAGGTAAAGAGGTAAGATGGCCACCCCCTTTGTCCCAGTGCCTGTCCCCATGGAACGAACCCCGACCTGGCCAAAGAGGACCCCCCCCCTGGGTATTATCTCTAGCTCTGGCTTTTCACCTCCTGGAAAGTCCCCCTGGGTGAAGGCCACTGGGTCCTGGGGGGCCACGGTAGCCTGTCCGAGCCTCCCCCAGGCGTGTTCCAGCCCCGAGGGGTACAGGATATCcagaggaggggagcaggggtCGGTCCAGGAGGATGGTACTCCAGGGGACAGTTGGGAGAGGCCCCTCACCCCTTCCCTGCTGGGCTATGAGGTCATGGAGGAGAGGGCAAAGTTCACGGTGTATAAAATCTTGGTGAGAAGGAATGAGGAAGAGAACTGGGTGATCTTCAGAAGGTACACAGACTTCGCCAGACTCAACGATAAGCTTAAGGAGTTATTTCCCAGGTTCAGACTAGCCCTTCCACCCAAGCGCTGGTTCAAGGATAACTACGACATGGAGTTTCTGGAGGAGAGACAGTTAGGCCTACAAGCCTTCCTACAGAACCTCATAGCACACAGAGATCTCACCAACAGTGAAGCGGTCAGACAGTTCCTTTGTCTGGATGATCCGCCAGGCCCCTTTGACAGCCTGGAGGAGAGCAGGGCTTTCTGTGAGAcgctggaggagaccaaccaccGTCTACAGAGGGACCTGTCGGAGAAACAGCGAGAGATTGACTCTTTGAAAACAGCCCTGGATGAGAGACAGACCCACATTGGGCTCCTGGAGAAGAGAGTGAAtggtaAGTCCCCCAGCCCAGAGGGCCTTACTCCAGAGAGCAGCAGACTATCAGCCCTAGGCAGTGAGAACAGCTCTGACACAGACACTgccgcagacagacacagagacacagacggagaggcggacatagacacagacagggGATCATCCACTGCATTGGAGGCTGACCAGGAGACATGTCCTGAAAGAAGAAGCTCAGAAATCCAAGGGCCACTCAAGGGTCATGGGGCGTACTGGTCATCTGCGGCCATTGATTGTTCACCAGACGCTTTTATAAATTCAACAACTCCATAGAATGATGTGGAATTCTGCATTTGATTCTGACCTGGGACCTGGAAAAGTATATTATTCCAAGATGGACTGATGATGAGCTACGAGTGTATAGACTTCATGTACAGATTCTTGCTTGTAGTGACTGCGTTAATGGGTGATTGAAGTTTTcatataaggtgtgtgtgtgtgggtgggggggggggggggggggttgtgtgtctAAGGATTCTAGAAATATACTGTAGATGAGTATTGATTTCCAACACTTGTTCTGCTCTCATCTAATGCCTTGGTTGTAAAATAATCAAGTGAAGATATACTGCAATATGTGTCTAACTGCCTTACATCAATCTCTTTTCTACAAAGCtaagtactgtagtactgtactcAGGTTCTCCTCCCTGCGAAAAGCAATACTAATAAACTTGATTGATCTTAAAACG
>XM_021589927.2
TTGCGAGTTTCCTAGTAGTATGTGAACGCGGCATCATACTGTAGAGGCGTGAATTGTCAGAGCTGTCCCACTGGATACAGATTgtaattcaacgtctattccacgttggttgtTGTGGAAACAACGTCAATTCAAACGCTGTCAGGCATGCGGACTATCTTCTCCGATCTGTCCAGTATCCACATCTCCTTCTCCAAATCAGAGCAATTCGTTTCTAAAAGCCAGGGATAGGCTACAGTATGTAAAGAGGTAAGATGGCCACCCCCTTTGTCCCAGTGCCTGTCCCCATGGAACGAACCCCGACCTGGCCAAAGAGGACCCCCCCCCTGGGTATTATCTCTAGCTCTGGCTTTTCACCTCCTGGAAAGTCCCCCTGGGTGAAGGCCACTGGGTCCTGGGGGGCCACGGTAGCCTGTCCGAGCCTCCCCCAGGCGTGTTCCAGCCCCGAGGGGTACAGGATATCcagaggaggggagcaggggtCGGTCCAGGAGGATGGTACTCCAGGGGACAGTTGGGAGAGGCCCCTCACCCCTTCCCTGCTGGGCTATGAGGTCATGGAGGAGAGGGCAAAGTTCACGGTGTATAAAATCTTGGTGAGAAGGAATGAGGAAGAGAACTGGGTGATCTTCAGAAGGTACACAGACTTCGCCAGACTCAACGATAAGCTTAAGGAGTTATTTCCCAGGTTCAGACTAGCCCTTCCACCCAAGCGCTGGTTCAAGGATAACTACGACATGGAGTTTCTGGAGGAGAGACAGTTAGGCCTACAAGCCTTCCTACAGAACCTCATAGCACACAGAGATCTCACCAACAGTGAAGCGGTCAGACAGTTCCTTTGTCTGGATGATCCGCCAGGCCCCTTTGACAGCCTGGAGGAGAGCAGGGCTTTCTGTGAGAcgctggaggagaccaaccaccGTCTACAGAGGGACCTGTCGGAGAAACAGCGAGAGATTGACTCTTTGAAAACAGCCCTGGATGAGAGACAGACCCACATTGGGCTCCTGGAGAAGAGAGTGAAtggtaAGTCCCCCAGCCCAGAGGGCCTTACTCCAGAGAGCAGCAGACTATCAGCCCTAGGCAGTGAGAACAGCTCTGACACAGACACTgccgcagacagacacagagacacagacggagaggcggacatagacacagacagggGATCATCCACTGCATTGGAGGCTGACCAGGAGACATGTCCTGAAAGAAGAAGCTCAGAAATCCAAGGGCCACTCAAGGGTCATGGGGCGTACTGGTCATCTGCGGCCATTGATTGTTCACCAGACGCTTTTATAAATTCAACAACTCCATAGAATGATGTGGAATTCTGCATTTGATTCTGACCTGGGACCTGGAAAAGTATATTATTCCAAGATGGACTGATGATGAGCTACGAGTGTATAGACTTCATGTACAGATTCTTGCTTGTAGTGACTGCGTTAATGGGTGATTGAAGTTTTcatataaggtgtgtgtgtgtgggtgggggggggggggggggggttgtgtgtctAAGGATTCTAGAAATATACTGTAGATGAGTATTGATTTCCAACACTTGTTCTGCTCTCATCTAATGCCTTGGTTGTAAAATAATCAAGTGAAGATATACTGCAATATGTGTCTAACTGCCTTACATCAATCTCTTTTCTACAAAGCtaagtactgtagtactgtactcAGGTTCTCCTCCCTGCGAAAAGCAATACTAATAAACTTGATTGATCTTAAAACG
>XM_036966209.1
AGCTCTTGAAAAAAGCTTGTCCTCCTCTGACTAAAAGAGAAAGCGGAATTGAGAGTTCCTGTTCCCGATGCAACGAAAAGACCCTGGTGGCTTGACAGAGCCGAGTACAGTTCCATTAAAAAGCTGTCAGGCATGCGGACTATCTTCTCCGATCTGTCCAGTATCCACATCTCCTTCTCCAAATCAGAGCAATTCGTTTCTAAAAGCCAGGGATAGGCTACAGTATAAGGTAAAGAGGTAAGATGGCCACCCCCTTTGTCCCAGTGCCTGTCCCCATGGAACGAACCCCGACCTGGCCAAAGAGGACCCCCCCCCTGGGTATTATCTCTAGCTCTGGCTTTTCACCTCCTGGAAAGTCCCCCTGGGTGAAGGCCACTGGGTCCTGGGGGGCCACGGTAGCCTGTCCGAGCCTCCCCCAGGCGTGTTCCAGCCCCGAGGGGTACAGGATATCcagaggaggggagcaggggtCGGTCCAGGAGGATGGTACTCCAGGGGACAGTTGGGAGAGGCCCCTCACCCCTTCCCTGCTGGGCTATGAGGTCATGGAGGAGAGGGCAAAGTTCACGGTGTATAAAATCTTGGTGAGAAGGAATGAGGAAGAGAACTGGGTGATCTTCAGAAGGTACACAGACTTCGCCAGACTCAACGATAAGCTTAAGGAGTTATTTCCCAGGTTCAGACTAGCCCTTCCACCCAAGCGCTGGTTCAAGGATAACTACGACATGGAGTTTCTGGAGGAGAGACAGTTAGGCCTACAAGCCTTCCTACAGAACCTCATAGCACACAGAGATCTCACCAACAGTGAAGCGGTCAGACAGTTCCTTTGTCTGGATGATCCGCCAGGCCCCTTTGACAGCCTGGAGGAGAGCAGGGCTTTCTGTGAGAcgctggaggagaccaaccaccGTCTACAGAGGGACCTGTCGGAGAAACAGCGAGAGATTGACTCTTTGAAAACAGCCCTGGATGAGAGACAGACCCACATTGGGCTCCTGGAGAAGAGAGTGAAtggtaAGTCCCCCAGCCCAGAGGGCCTTACTCCAGAGAGCAGCAGACTATCAGCCCTAGGCAGTGAGAACAGCTCTGACACAGACACTgccgcagacagacacagagacacagacggagaggcggacatagacacagacagggGATCATCCACTGCATTGGAGGCTGACCAGGAGACATGTCCTGAAAGAAGAAGCTCAGAAATCCAAGGGCCACTCAAGGGTCATGGGGCGTACTGGTCATCTGCGGCCATTGATTGTTCACCAGACGCTTTTATAAATTCAACAACTCCATAGAATGATGTGGAATTCTGCATTTGATTCTGACCTGGGACCTGGAAAAGTATATTATTCCAAGATGGACTGATGATGAGCTACGAGTGTATAGACTTCATGTACAGATTCTTGCTTGTAGTGACTGCGTTAATGGGTGATTGAAGTTTTcatataaggtgtgtgtgtgtgggtgggggggggggggggggggttgtgtgtctAAGGATTCTAGAAATATACTGTAGATGAGTATTGATTTCCAACACTTGTTCTGCTCTCATCTAATGCCTTGGTTGTAAAATAATCAAGTGAAGATATACTGCAATATGTGTCTAACTGCCTTACATCAATCTCTTTTCTACAAAGCtaagtactgtagtactgtactcAGGTTCTCCTCCCTGCGAAAAGCAATACTAATAAACTTGATTGATCTTAAAACG

Function

NR:

description
sorting nexin-16-like

GO: NA

KEGG:

id description
K17928 SNX16; sorting nexin-16

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966208.1 False 1981 mRNA 0.48 8 32191802 32199230
XM_021589926.2 False 1743 mRNA 0.50 9 32191802 32199385
XM_021589927.2 False 1741 mRNA 0.50 9 32191802 32199386
XM_036966209.1 True 1729 mRNA 0.50 9 32191802 32201824

Neighbor

gene id symbol gene type direction distance location
asip2b agrp2 coding downstream 4283 32062049 ~ 32187519 (-)
LOC110508991 LOC106598834 coding downstream 62431 32119973 ~ 32129371 (-)
tsen15 tsen15 coding downstream 87091 32100303 ~ 32104711 (-)
LOC110508985 LOC106598838 coding downstream 104208 32074971 ~ 32087594 (-)
LOC110508983 LOC106598841 coding downstream 128349 32034823 ~ 32063453 (-)
LOC110508997 NA coding upstream 26601 32228406 ~ 32230258 (-)
LOC110508996 NA coding upstream 39968 32240882 ~ 32243585 (-)
ccdc39 ccdc39 coding upstream 42292 32244116 ~ 32263430 (-)
dcnl1 LOC106598823 coding upstream 61819 32263643 ~ 32267018 (-)
LOC110509000 b3gnt5 coding upstream 79079 32280903 ~ 32292193 (-)
LOC110508982 NA non-coding downstream 162577 32023057 ~ 32029225 (-)
LOC110508978 NA non-coding downstream 176912 32001255 ~ 32014890 (-)
LOC110508977 NA non-coding downstream 228452 31958284 ~ 31967067 (-)
G2128608 LOC106599183 non-coding downstream 256158 31935028 ~ 31935644 (-)
G2129021 NA non-coding upstream 65883 32267707 ~ 32268032 (-)
G2129038 NA non-coding upstream 95369 32297193 ~ 32297394 (-)
G2129041 NA non-coding upstream 103475 32305299 ~ 32305562 (-)
G2129044 NA non-coding upstream 107586 32309410 ~ 32309627 (-)
G2128568 NA other downstream 308662 31882715 ~ 31883140 (-)
LOC110508968 LOC106598866 other downstream 454310 31708667 ~ 31761665 (-)
G2128242 LOC106584167 other downstream 868438 31319283 ~ 31323364 (-)
G2130393 NA other upstream 1196723 33398547 ~ 33399084 (-)
G2130771 LOC106598333 other upstream 1838382 34040206 ~ 34066665 (-)
G2130780 LOC106598333 other upstream 1839614 34041438 ~ 34068073 (-)
LOC110509052 LOC106598333 other upstream 1839745 34038788 ~ 34058344 (-)

Expression


Co-expression Network