LOC110509184 (LOC103370426)


Basic Information

Item Value
gene id LOC110509184
gene name LOC103370426
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 41277001 ~ 41391686 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966673.1
GAAGGTGatgtgactgacacacacaggaTCTGCtagaaacacaacacatcacaacaccaTACCGATAATGACGGGGTGAAGGTGGTGGGATGCGAGAAGATATTATTCCGCCGGTATATATTCAACTGATTTATACCATGAGGAAAAGTGGAGCTACACGTGCACACAGTGGGAAATAAGACGACAAGGTGCTGCAAAATGAAGCCACCTATGCACCATGGAGTTGCTGTGTTTCTCGTCATCACTCTGTGCGCCAGCCTGTTCCTCGTCTACAACGGCGGTTTCCACGGTAGCACCAGTGAGAGCGGGATGGCGGGTGCGGCAGGGGGATCCAGAGACAGGAGCGATGCCAGGAGAAGCTGGCAGACAGAGCAGCAGCAGAAAGCCTCAGTCAGACCAGCAGTCCTACAGGGATACAGCAGCATCATCGACCACAAGcctCTGAAAATGCACTGCCATAGCTGTGCGTTGGTGACCAGCTCCGGTCACCTGATAGGTGGTAGTCGCGGCGAGGAGATCGACCGGGCGGAGTGTGTGATCCGTATGAACGACGCCCCCACGGCACGGGGCTACGGTGGAGACGTTGGGCACCGCACCTCGCTACGTGTCATCGCTCACTCCAGCATGCAGAGGGTCCAACGGAGCCGTCACGAACTGCTCAACGCATCCCAGgACACAGTGTTTATCTTCTGGGGGCCCAGTAGTTACATGCGGCGGGATGGGAAGGGTCTGGTCTACAACAACCTGAGGTTGATGAACCAGGTGCTGCCCAAACTAAAGGTCTACATGATCTCCTGGCAGAAGATGCTGCAGTTTGACGAACTCTTCAAGCGGGAGACGGGCAAAGACAGgCGTATCTCCAACTCGTGGTTGAGTACTGGTTGGTTCACCATGACCATAGCTCTGGAGCTGTGTGACCGGATCAATGTCTATGGCATGGTGGCTCCAGACCACTGCAGAGAGCCCCAGCCCCCATCGGTCCCCTACCACTACTACGAGCCCCTCGGTCCAGAGGAGTGTGCCATGTACATCAGCCATGAGCGGGGCCGCAGGGGCAGCCATCACCGCTTTATCACAGAGAAGAGGGTCTTTGCCAGCTGGGCTCGAACCTTCAACATCCACTTCTACCAGCCTGACTGGGAACCCCCGCCGCTGGCCCCCGCTAACCGCACGCAGGGGGAGACGGTCTCGGTCAGCATACGTGACTGGCGACCGGAAATGGAAGTTGGGTGGTGACAGTGACTGCTGGGCATCTGTGGAAAAGCTGTAACTCAAATGGGACTGAGCTGGAGATGGTGATGGACAAGACCACATGAGACGGTCCAAAGTCTTCTGACCACAACTGAATGGTCCATACAGTAGGATACTGACTGCACATGGTCCTTCGCTGAGGATCGACCGTCCCCCTCTAGCTATCTGTCATGGACAACTGTAGAATAATGACTGCAAAACGTCCTTCACTGAGGATCGACCGTCTTCCTCTAGGCCGTCATGGACAACTGTAGAATAATGACTGCAAAACGTCCTTCACTGAGGATCGACCGTCCTCCTCTAGCTATCTGTCATGGACAACTGTCGAATACTGACTGCACATGGTCCTTCACTGAGGATCGACCGTCCTCCTCTAGCTATCCGTCATGGACAACTGTAGAATAATGACTGCAAAACGTCCTTCACTGAGGATCGACCGTCCTCCTCTAGGCCGTCATGGACAACTGTAGAATACTGACTGCACATGGTCCTTCACTGAGGATCGACCGTCCTCCTCTAGCTATCTGTCATGGACAACTGTCGAATATTGACTGCACATGGTCCTTCACTGAGGATCGACCGTCCTCCTCTAGCTATCCGTCATGGACAACTGGAAGGACCAAATACAGCTGGCTGGTCCATAGGCTACTAACCACAACTTGTTTGAGCGTACTGGATGGCCGTAAGGGTAACCGACCACTAGTGGTGCACGGGTCAGCAACTGCCAGACTAGATGTGATAGTGAAAATGTGAGGCCGCACCCAACCCTAAAATATAGaaaatgtactgtaggctacagtcagGGACTGTGGATGTTTTTGACAAGGGGCACAGTATTGTTTTATCCTGATTTCGATGTGTTTCTGCTTAGAattttgttagtcaacttgtctataattagatacatgtagCTTCTCGTCTGTCATTACATGTTGCCGTAGTAACTAAATCAACCATTGTTCACCAGAATAATGTTATAAATCGATAGAATGAACGCttctgtcatctctgcttctttcATGGCGAGAAGACCTTTAGAGaccggggagaaaatgcaataacaaaataaaaatgaGAAATATTTTCTGTGCAGaatttccaaatgacatcactTCGACCGGGTTGTAAGGAAATAAAAAGCTTTGAAAATGACCCAACGTGTTTCTGAT
>TU2444519
GCAGGGGGAGACGGTCTCGGTCAGCATACGTGACTGGCGACCGGAAATGGAAGTTGGGTGGTGACAGTGACTGCTGGGCATCTGTGGAAAAGCTGTAACTCAAATGGGACTGAGCTGGAGATGGTGATGGACAAGACCACATGAGACGGTCCAAAGTCTTCTGACCACAACTGAATGGTCCATACAGTAGGATACTGACTGCACATGGTCCTTCGCTGAGGATCGACCGTCCCCCTCTAGCTATCTGTCATGGACAACTGTAGAATAATGACTGCAAAACGTCCTTCACTGAGGATCGACCGTCTTCCTCTAGGCCGTCATGGACAACTGTAGAATAATGACTGCAAAACGTCCTTCACTGAGGATCGACCGTCCTCCTCTAGCTATCTGTCATGGACAACTGGAAGGACCAAATACAGCTGGCTGGTCCATAGGCTACTAACCACAACTTGTTTGAGCGTACTGGATGGCCGTAAGGGTAACCGACCACTAGTGGTGCACGGGTCAGCAACTGCCAGACTAGATGTGATAGTGAAAATGTGAGGCCGCACCCAACCCTAAAATATAGaaaatgtactgtaggctacagtcagGGACTGTGGATGTTTTTGACAAGGGG
>TU2444520
GCAGGGGGAGACGGTCTCGGTCAGCATACGTGACTGGCGACCGGAAATGGAAGTTGGGTGGTGACAGTGACTGCTGGGCATCTGTGGAAAAGCTGTAACTCAAATGGGACTGAGCTGGAGATGGTGATGGACAAGACCACATGAGACGGTCCAAAGTCTTCTGACCACAACTGAATGGTCCATACAGTAGGATACTGACTGCACATGGTCCTTCGCTGAGGATCGACCGTCCCCCTCTAGCTATCTGTCATGGACAACTGTAGAATAATGACTGCAAAACGTCCTTCACTGAGGATCGACCGTCTTCCTCTAGGCCGTCATGGACAACTGTAGAATAATGACTGCAAAACGTCCTTCACTGAGGATCGACCGTCCTCCTCTAGCTATCTGTCATGGACAACTGTCGAATACTGACTGCACATGGTCCTTCACTGAGGATCGACCGTCCTCCTCTAGCTATCCGTCATGGACAACTGTAGAATAATGACTGCAAAACGTCCTTCACTGAGGATCGACCGTCCTCCTCTAGCTATCCGTCATGGACAACTGGAAGGACCAAATACAGCTGGCTGGTCCATAGGCTACTAACCACAACTTGTTTGAGCGTACTGGATGGCCGTAAGGGTAACCGACCACTAGTGGTGCACGGGTCAGCAACTGCCAGACTAGATGTGATAGTGAAAATGTGAGGCCGCACCCAACCCTAAAATATAGaaaatgtactgtaggctacagtcagGGACTGTGGATGTTTTTGACAAGGGG
>TU2444521
GCAGGGGGAGACGGTCTCGGTCAGCATACGTGACTGGCGACCGGAAATGGAAGTTGGGTGGTGACAGTGACTGCTGGGCATCTGTGGAAAAGCTGTAACTCAAATGGGACTGAGCTGGAGATGGTGATGGACAAGACCACATGAGACGGTCCAAAGTCTTCTGACCACAACTGAATGGTCCATACAGTAGGATACTGACTGCACATGGTCCTTCGCTGAGGATCGACCGTCCCCCTCTAGCTATCTGTCATGGACAACTGTAGAATAATGACTGCAAAACGTCCTTCACTGAGGATCGACCGTCTTCCTCTAGGCCGTCATGGACAACTGTAGAATAATGACTGCAAAACGTCCTTCACTGAGGATCGACCGTCCTCCTCTAGCTATCTGTCATGGACAACTGTCGAATACTGACTGCACATGGTCCTTCACTGAGGATCGACCGTCCTCCTCTAGCTATCCGTCATGGACAACTGGAAGGACCAAATACAGCTGGCTGGTCCATAGGCTACTAACCACAACTTGTTTGAGCGTACTGGATGGCCGTAAGGGTAACCGACCACTAGTGGTGCACGGGTCAGCAACTGCCAGACTAGATGTGATAGTGAAAATGTGAGGCCGCACCCAACCCTAAAATATAGaaaatgtactgtaggctacagtcagGGACTGTGGATGTTTTTGACAAGGGG

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0097503 sialylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008373 sialyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966673.1 False 2420 mRNA 0.51 6 41277001 41391686
TU2444519 False 619 lncRNA 0.51 2 41277341 41278248
TU2444520 False 765 lncRNA 0.50 2 41277341 41278248
TU2444521 True 692 lncRNA 0.51 2 41277341 41278248

Neighbor

gene id symbol gene type direction distance location
ak5 LOC102787869 coding downstream 76841 41051071 ~ 41200160 (-)
LOC110509157 dnajb4 coding downstream 404791 40867279 ~ 40872210 (-)
LOC110508261 dnajb4 coding downstream 434134 40783606 ~ 40842867 (-)
LOC110509159 LOC106596360 coding downstream 518076 40752278 ~ 40758925 (-)
LOC118944846 NA coding downstream 526186 40748516 ~ 40750815 (-)
LOC118944905 NA coding upstream 140928 41532614 ~ 41532745 (-)
LOC110509161 rs8 coding upstream 141285 41532971 ~ 41536197 (-)
LOC118944899 NA coding upstream 142806 41534492 ~ 41534560 (-)
si:ch211-106k21.5 LOC106596230 coding upstream 160304 41551990 ~ 41568745 (-)
znf414 znf414 coding upstream 195613 41587299 ~ 41626840 (-)
G2137426 NA non-coding downstream 3552 41273141 ~ 41273449 (-)
G2137423 NA non-coding downstream 6425 41270375 ~ 41270576 (-)
G2137422 NA non-coding downstream 6693 41269289 ~ 41270308 (-)
G2137405 NA non-coding downstream 59855 41214970 ~ 41217146 (-)
G2137375 NA non-coding downstream 81840 41186393 ~ 41195161 (-)
G2137495 NA non-coding upstream 22809 41414495 ~ 41426910 (-)
G2137507 NA non-coding upstream 61429 41453115 ~ 41453626 (-)
G2137540 NA non-coding upstream 113830 41505516 ~ 41506592 (-)
G2137576 NA non-coding upstream 178058 41569744 ~ 41569993 (-)
G2137578 NA non-coding upstream 181714 41573400 ~ 41573613 (-)
G2137419 NA other downstream 15730 41260800 ~ 41261271 (-)
G2137111 NA other downstream 801300 40472088 ~ 40475701 (-)
G2137086 NA other downstream 861461 40415303 ~ 40415540 (-)
G2136243 NA other downstream 1155102 40051639 ~ 40121899 (-)
LOC110508256 LOC106596607 other downstream 1279955 39973367 ~ 40103148 (-)
LOC110509166 LOC106596257 other upstream 238975 41630582 ~ 41641166 (-)
G2137555 NA other upstream 340028 41731714 ~ 41736389 (-)
G2137648 LOC106596196 other upstream 419109 41810795 ~ 41814201 (-)
G2137814 LOC106597294 other upstream 829236 42220922 ~ 42226965 (-)
G2138294 LOC106594920 other upstream 957530 42349216 ~ 42351452 (-)
G2137433 NA non-coding upstream 1226 41279474 ~ 41279696 (-)
G2137436 NA non-coding upstream 8846 41287094 ~ 41287333 (-)
G2137438 NA non-coding upstream 12971 41291219 ~ 41291579 (-)
G2137444 NA non-coding upstream 32679 41310927 ~ 41311152 (-)
G2137448 NA non-coding upstream 38055 41316303 ~ 41316513 (-)

Expression


Co-expression Network