XLOC_000040 (si:ch211-132g1.4)


Basic Information

Item Value
gene id XLOC_000040
gene name si:ch211-132g1.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 1904419 ~ 1911381 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000078
CTTTTCTTGATACGATTGTCATAGGTTTCTAGAGTTTTTGCTGTATTCTGAAGAGCAATGAGCTGTCAGCACAATCTCTTGATTTTATTCCTCTGTTGCGTCGCTGCGCTCACTGTCTCAGCACAGACATGTGGAGAACAAGTGCTAGAGGGAACATCCTGCAGCATTAATGGGGAaacaacaaacaatgaaaaagctGCTGAAATCAGATGGGCCTTTACCTCCAGTGATGGAACCACAGCTGAATGGAAAAAAGGATCCAGGAGAAAACCTCCAGCAGGATTAACAATAGAAGAAGACGGATCTTTACGATTAGAAAGTGTTCGTCAGAATAACACCGGCACATATAAatacactgcttttaatgccaatgGCCAACAGATTGGGACTGAAactgtggaactgaaagtttatGCGAAGGTTAATAAACCTAATGTGAAGATTGAATGCAAACCTGATGGGACTGTTACACTCCTCTGTGACACTGGAAACTATAAAGATCTGAAAATATCCTGGTATGAAGACGACAAGATCATGCAGGATGAAAAAACTACTCATCTGACCCTAAAATCGACTAAAATAAACGAGAACACACAGTACGCATGCAGTGTAAGCAATCCTGCCAGCAGTGAACAAAGTGACAGAATTACAGTGCCATGTAGTGGCCCAGATCAagCGAAGGCAACCAAATCAACTGTGAGGCTCAACAGTACAGCTAAAGGGACGGTTAAACTCATCTGTGACGCTGGAAATGCTAAAGATCAGACTATATCCTGTTATGAAGACCACATGAAGGATGAAACGAAAACGAATCTGACCTTAACATCGTCTAAAGTGGAGGGTAAACGGTACTCATGCAGTGAACAAACCAGCAGTAAACTCTCATGTAGCAGTCCAAATCTCTGCCTAAATTACTATGCCGTGCTGGGCGTTTTAGCAGGCGGAGGAGTtcttctgtttctgcttatttGTGTTTTCATCTGGTGTGCGTGTCAAAGCTGTCGCAAGAAGAATCGACTACTGTAGGTTTGGGGACTAATTTTGTCTAATGATGAAGATATTATGAAGCTTATCcataaagcaaaaaataataataataaaataaaaaattatgtgtgtgtgtgtgtgtgtgtgtgt

Function

symbol description
si:ch211-132g1.4 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human CD2 (CD2 molecule).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-26 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human CD2 (CD2 molecule).

Ensembl:

ensembl_id ENSDARG00000095102

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000078 True 1137 mRNA 0.41 7 1904419 1911381

Neighbor

gene id symbol gene type direction distance location
XLOC_000039 si:ch211-132g1.6 coding upstream 4571 1896737 ~ 1899848 (+)
XLOC_000038 atp1a1a.5 coding upstream 54315 1838164 ~ 1850104 (+)
XLOC_000037 atp1a1a.3 coding upstream 88759 1805294 ~ 1815660 (+)
XLOC_000036 atp1a1a.1 coding upstream 107587 1712140 ~ 1796832 (+)
XLOC_000035 atp1a1a.4 coding upstream 198260 1689775 ~ 1706159 (+)
XLOC_000041 si:ch211-132g1.1 coding downstream 4586 1915967 ~ 1923253 (+)
XLOC_000042 si:ch211-132g1.7 coding downstream 29650 1941031 ~ 2000357 (+)
XLOC_000043 NA coding downstream 90335 2001716 ~ 2005632 (+)
XLOC_000044 NA coding downstream 112028 2023409 ~ 2023645 (+)
XLOC_000045 slc5a3a coding downstream 113704 2025085 ~ 2027100 (+)
XLOC_000034 NA non-coding upstream 285105 1617203 ~ 1619314 (+)
XLOC_000032 NA non-coding upstream 326168 1571847 ~ 1578251 (+)
XLOC_000031 NA non-coding upstream 543588 1358731 ~ 1360831 (+)
XLOC_000030 NA non-coding upstream 562182 1315289 ~ 1342237 (+)
XLOC_000029 CR450787.2 non-coding upstream 685614 1218691 ~ 1218805 (+)
XLOC_000049 CR352215.1 non-coding downstream 364224 2275605 ~ 2275742 (+)
XLOC_000051 CR352215.2 non-coding downstream 491722 2403103 ~ 2403224 (+)
XLOC_000053 NA non-coding downstream 1807285 3718666 ~ 3720603 (+)

Expression


Co-expression Network