G2105419 (LOC104953893)


Basic Information

Item Value
gene id G2105419
gene name LOC104953893
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 11499126 ~ 11500072 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2408125
GTGCAATTTAATTGTTCATACATAATTACATAATACAATCAAATATAAAAAAGTATACTATTGATCAACATATACAAACTTTAAACAATTTTCAAAATACATTTCCCAACACATGAATAGAGCTTTAATGCCTACTAATatatgtctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgcacacacgcacacacgcacacacacgcacacacacacggctactTTATAGGGTCTATCcaaagcagtagcagcagcaggtggGTTCCTTGTCTATCTTGTACTTCCCAGAGTCAGGCTGGTCTCTACACTCAGCCACAAAGGCCTTCAGCTGGGACACCAGGACTCTGTCCTTCTGgtgttgctgaaaataaacagtaTGGCAGTAAACTTTCTgaacatttacatacagtactatACTATTACCATGTTACATAACCACTGTATTGTGTGCTGTAACATTAAATATACCAGGAAGGAGATGCAACATTATACCAGATCATTGAATTACCATCTTTTCTCATTGAACAGGCATGCAGAAGATAAACAGGGATGGTTACTTTTGAATATGTCATGCCATGTTAATGCAAAAGCTGACCTTGATGGTCTCGTATGTGTCTGTGATGAGGGCAATGAACAGACTGAGCACCATgtaaatgaagagagagaggaaggagtagagGTAGAGCCTGCTGAACAGCCACACCAtgtatctcttctctctcatcttctgGAAAGTGGAGTACAAGTCATCACCGTTGATCAGAGAGAACAGGCACTCCGTCACCTTGTCCAAGGTCCGGAACTGGCAGAAAATCAATTGGTAACACTTTGCATTAAAG

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2408125 True 887 TUCP 0.41 2 11499126 11500072

Neighbor

gene id symbol gene type direction distance location
LOC110508539 NA coding downstream 35048 11459373 ~ 11464078 (-)
LOC110508163 LOC106569415 coding downstream 353888 11143483 ~ 11145238 (-)
LOC110508530 jun coding downstream 407301 11089516 ~ 11091825 (-)
LOC110508529 LOC106569411 coding downstream 435947 11037198 ~ 11063179 (-)
LOC118944867 NA coding downstream 470699 11027041 ~ 11028427 (-)
LOC110508543 LOC106600422 coding upstream 15482 11515554 ~ 11518446 (-)
LOC110508547 pter coding upstream 56519 11556591 ~ 11572467 (-)
LOC110508549 LOC106600425 coding upstream 90036 11590108 ~ 11631741 (-)
LOC110508552 cables1 coding upstream 254003 11754075 ~ 11786100 (-)
gata6 LOC106600428 coding upstream 336575 11836647 ~ 11843807 (-)
G2105392 LOC106600420 non-coding downstream 8936 11488776 ~ 11490190 (-)
G2105402 NA non-coding downstream 25715 11472360 ~ 11473411 (-)
G2105390 NA non-coding downstream 41313 11457565 ~ 11457813 (-)
G2105389 NA non-coding downstream 41642 11457278 ~ 11457484 (-)
G2105446 NA non-coding upstream 26812 11526884 ~ 11527168 (-)
G2105437 LOC106600424 non-coding upstream 37810 11537882 ~ 11546473 (-)
G2105456 NA non-coding upstream 47225 11547297 ~ 11547497 (-)
G2105462 NA non-coding upstream 71470 11571542 ~ 11647115 (-)
G2105515 NA non-coding upstream 161755 11661827 ~ 11662608 (-)
LOC110508522 NA other downstream 605046 10886198 ~ 10894141 (-)
G2103920 NA other downstream 790627 10708012 ~ 10708499 (-)
G2103257 NA other downstream 1292450 10206063 ~ 10206676 (-)
G2103203 LOC106600278 other downstream 1383729 10113428 ~ 10115397 (-)
LOC110508476 LOC106600265 other downstream 1491223 10004226 ~ 10007929 (-)
G2109663 LOC106599735 other upstream 4039696 15539768 ~ 15554897 (-)
G2109705 NA other upstream 4103613 15603685 ~ 15604463 (-)
LOC110508627 LOC106599725 other upstream 4203264 15703333 ~ 15793545 (-)
G2110939 NA other upstream 5299318 16799390 ~ 16799869 (-)
LOC110508646 LOC106599672 other upstream 5756136 17254319 ~ 17260420 (-)

Expression


Co-expression Network