LOC110509877 (LOC106563217)


Basic Information

Item Value
gene id LOC110509877
gene name LOC106563217
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 26504919 ~ 26532797 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591056.2
TCAAGAAGGTAACATTTTAGATTGAGTAGCCTGCAAGTTATATAGTTCCTCAAAAATGTCGATTGACTGACTAGCAAGGCTCGTTGTTAGTGTGGGTCCGAATAGTGAATAGCATTGCTTCATGGTTCAACTTCGGTCTCGGTGTAACTGTGCTGTGCATACATACGGCTGCATTTTCGACAGAGTTGCCCTGTAGCTCTCCACGCGCGCAAGTGACAAGAAAGAGATTTCAGCACTGGAGCTGTCCAAGCAATCTTTTTGACGGACTCGCATCACTCTTATCACCTATGCTATAGGTTATTTCGATCACATTTGCACTATAGATTTGTAAGTGAGGCTATTTGAGTGAGTGTCACGCATACATAAAATACCATTCAATGCATTGTGGTAAAGAAACACGAGTAAGCTAAACCCGCACATCGCCTACTTTTCATTCAATCGAAGCCTGGAAATGCTGGGTGGCCGTGCGTGAGGCACAAGAAAAAAGGAATTCTCAAGTCACGGTGGAGAGTTGTCCGATTTTTATCTCAGtcaTGGGAGTGCTCATGTCTAAGAAGCATCAGGTGGAGAAGGTGCAGAAATGCACCTCGGTCGTCTCCGCCTTTCAGGAAGGGGTAAAGGAACGCGCCCCATCCACAACAAACCAGGAGGAAGGATccaaagaggaaagagaggggccGACTGAAGCCTCGCCACCACCCAacctggaggagaaggaggagacagagcacagagaggcagacagcaaAGCGGGGCCCTCAGGGACCTCCCAGCAGGCTGCAACTCCAGCCCCCACCAAGGACGAGTGTAAGGTCAACCAGGAGGCCTGGAATAGGTTACGGGACGGGAAGGGGGTGGAGCCTGAGGATCTGGACAAGACCGGCCATCAGCTCACCCCAACTGCCTTTGTACGTCCCAAGAGAGATGCCAACGTTGACCAGCCTATGGAGATagcactgggacagagagagcagCCGGTGAACGATGAGatgtgtgaggtgtgtgaggtGTGGACGGCCGACGACCTGTTTCCCTGCAGGACCTGCACACGGGTCTTCCATGATGGCTGTCTGAGTGAAATGGGCTACCTGCGTCCCGAACTCCTGCAGGAGATGAGGGAGACAGCTCACACCGCGACAGGCTGGAGCTGTTACTACTgtGACAACGTGAACCTGCTCCTGACTGAAGAGGAGATGTACAGCCTGATGGAAACCTTCAAGCAGTGCAAGATCATCCCTGAGTCGTGCCTGGTGTCAGATGAGCTGCTGCAGTACCGACACTTTGTGTCCAAGCAACTGTTTGAGAAGGACCTCTCTgatgaacaggaggaggaggtgttggcCCAATTCGCTGCCCTGGACCCGGAGAAGAGGGGCCAGATCGAGTGGTCTGACTTCCTCTACCACGAGTCCCTGGAAGTGCTCAAGAAGTTCCGCACAGAGAACTCCTTGGTGCGGCTGTTGAGTGCTAAGGAGCGGGACCATGTGCGGTCAGTGTTCATGGGTTTGGACCTGGATAAAGACAGTGTGGTCACAGGAGCAGAGACCCGCTGGGCCCAGCAGTCCTGGTTTCAGAAGCTCAGCATGGAGTCCCAGTCCTGCAATGTGAGTATTAGCCATGTTGGCCCAATATCTGACAGCAGCCCAGCCAGCTCCAGCAGTGAGAGAAGCACTCAGAAAGATGACAGACCAGTGAGCTGGGATGACTTCCTGAGGGAGAGTGCCATCTACATCCTCGCTGCCCGGCCCAACAGCTCGGCAATGCATATCCGCCTGCCCCTATAGCCCCAGTGATCTCACCTTGCCTGGGCCGGGCCCCACCATAGAGAGAAGGCCACCCCTGGAAGTCCCTGTGTAGGACAGGTGGAGAGCCGGTACCTTTGCACTGTAGGGGAATACTGTACCACGCAGAGACTGGACAGAATAAGCCATCCACAGATCTCCTGCTTCACACCATAGATCAATGACCAACTAACACCAACAGTCAACGACCCACTGACAACAACAATCAATGACCTACAAGTACTTACTGAGGGTAAAATGATAAACAACCTGACAACACAAGCTGACAATCCACTGGTTATAGATACTCCTGAAACACAGGATAAAAAGCAACAGCCCATTTTCAACACAAGCCAACAATTCACTGATGCTTTGAAGACTCGGGGTATCCTGGTAGGCACACATTCCCCTAAACGATAACTACTATATATAGTCAATTTGTCATGCTACAGTCTTACAAACCTCTATATGATCAATTCAATTGGATTAGAAGGACAATGATAGGCTGTCTTATGCTATCACATATCCTGCTATTGGGTAAAGCATCATATTTGGATCAGCTTCTGTATTGTAACACTGTTTTGTATCACTTGGCATCATACTTGTTGATCATAAAATAGTATCTGTCATTTAGGGAGATTTTGAAGCCCCTTCAAATCTTGGTCAATGAGTGTATAGGACTGACCGTGCAACTGCTCCAGATCAGCACATGTACCAAACAGGAATAACAGCTATCCGCATACataatattatatattaagacatgccATACATACAAGTATAATGACATATTATTATGCATTAAAAAGCTGCATTTATTCCTGTACCCTCTAAGCTATTTTCAGTTTTTCCACTCACTTGTTCAAGATCCATATATTTTTGATGATTCTGATATTGTAATGGACACTAACCCAGTATCTGGCCTGTACATTCAGCCATAAGTACATTTTCTCTTGTAATGTAGTAGTCCAACCCCTGCGTATGTATGCTATGACAAAGTAGAATTATCTGCTGCTGCTGCCATTCCAATCTTGTATTTGAACACTGCCATTTAGATTTGTACGGCTTTGAGGATTATTTGTTGGAGTTTAAATCATGCATTGGAAAGTAATATCTCCTTAGGATGAAGGTTGAAGCCCACGCATTAGGCCTTCATGATACTTGCATAAGCATTGCTTCAGACCTGGCTTTGTGGACATAACAGTTTGCCTTAGTTAGGGTAACATGTTGATACCTTTTCCAAGGTGCTGCAGTATGTCATGTGTATGCTTATGTAATGAAGGTCCACTTGTCTGGTATCCTGGCCTGAAGTAGCTCATTACTTGAATCCTAAGAGGGTAAAGGCTTTGGAATTATGTGACAGTGCTGAAATAAATGAATGGCATTAACCCTCCTAAATCACTCTCTGTAC
>TU2480105
AGAACTCCTTGGTGCGGCTGTTGAGTGCTAAGGAGCGGGACCATGTGCGGTCAGTGTTCATGGGTTTGGACCTGGATAAAGACAGTGTGGTCACAGGAGCAGAGACCCGCTGGGCCCAGCAGTCCTGGTTTCAGAAGCTCAGCATGGAGTCCCAGTCCTGCAATGTGAGTATTAGCCATGTTGGCCCAATATCTGACAGCAGCCCAGCCAGCTCCAGCAGTGAGAGAAGCACTCAGAAAGATGACAGACCAGTGAGCTGGGATGACTTCCTGAGGGAGAGTGCCATCTACATCCTCGCTGCCCGGCCCAACAGCTCGGCAATGCATATCCGCCTGCCCCTATAGCCCCAGTGATCTCACCTTGCCTGGGCCGGGCCCCACCATAGAGAGAAGGCCACCCCTGGAAGTCCCTGTGTAGGACAGGTGGAGAGCCGGTACCTTTGCACTGTAGGGGAATACTGTACCACGCAGAGACTGGACAGAATAAGCCATCCACAGATCTCCTGCTTCACACCATAGATCAATGACCAACTAACACCAACAGTCAACGACCCACTGACAACAACAATCAATGACCTACAAGTACTTACTGAGGGTAAAATGATAAACAACCTGACAACACAAGCTGACAATCCACTGGTTATAGATACTCCTGAAACACAGGATAAAAAGCAACAGCCCATTTTCAACACAAGCCAACAATTCACTGATGCTTTGAAGACTCGGGGTATCCTGGTAGGCACACATTCCCCTAAACGATAACTACTATATATAGTCAATTTGTCATGCTACAGTCTTACAAACCTCTATATGATCAATTCAATTGGATTAGAAGGACAATGATAGGCTGTCTTATGCTATCACATATCCTGCTATTGGGTAAAGCATCATATTTGGATCAGCTTCTGTATTGTAACACTGTTTTGTATCACTTGGCATCATACTTGTTGATCATAAAATAGTATCTGTCATTTAGGGAGATTTTGAAGCCCCTTCAAATCTTGGTCAATGAGTGTATAGGACTGACCGTGCAACTGCTCCAGATCAGCACATGTACCAAACAGGAATAACAGCTATCCGCATACataatattatatattaagacatgccATACATACAAGTATAATGACATATTATTATGCATTAAAAAGCTGCATTTATTCCTGTACCCTCTAAGCTATTTTCAGTTTTTCCACTCACTTGTTCAAGATCCATATATTTTTGATGATTCTGATATTGTAATGGACACTAACCCAGTATCTGGCCTGTACATTCAGCCATAAGTACATTTTCTCTTGTAATGTAGTAGTCCAACCCCTGCGTATGTATGCTATGACAAAGTAGAATTATCTGCTGCTGCTGCCATTCCAATCTTGTATTTGAACACTGCCATTTAGATTTGTACGGCTTTGAGGATTATTTGTTGGAGTTTAAATCATGCATTGGAAAGTAATATCTCCTTAGGATGAAGGTTGAAGCCCACGCATTAGGCCTTCATGATACTTGCATAAGCATTGCTTCAGACCTGGCTTTGTGGACATAACAGTTTGCCTTAGTTAGGGTAACATGTTGATACCTTTTCCAAGGTGCTGCAGTATGTCATGTGTATGCTTATGTAATGAAGGTCCACTTGTCTGGTATCCTGGCCTGAAGTAGCTCATTACTTGAATCCTAAGAGGGTAAAGGCTTTGGAATTATGTGACAGTGCTGAAATAAATGAATGGCATTAACCCTCC

Function

NR:

description
PHD finger protein 24-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591056.2 False 3192 mRNA 0.48 8 26504919 26532797
TU2480105 True 1735 TUCP 0.44 3 26528972 26532780

Neighbor

gene id symbol gene type direction distance location
LOC110509876 LOC106563358 coding upstream 40304 26463263 ~ 26464615 (+)
LOC110509874 LOC106563218 coding upstream 241016 26123905 ~ 26263903 (+)
LOC110509870 LOC106563360 coding upstream 933726 25567526 ~ 25571193 (+)
LOC110509866 LOC106563223 coding upstream 1302083 24944825 ~ 25202836 (+)
trnat-ugu-47 NA coding upstream 1359007 25145843 ~ 25145912 (+)
LOC110509878 LOC106563216 coding downstream 24007 26556804 ~ 26566726 (+)
LOC110509879 LOC106563215 coding downstream 36550 26569347 ~ 26699137 (+)
LOC110509881 LOC106563214 coding downstream 166976 26699773 ~ 26720454 (+)
LOC110509880 LOC106563212 coding downstream 187776 26720573 ~ 26730554 (+)
LOC110509887 LOC106563206 coding downstream 365153 26897950 ~ 26936831 (+)
G2169865 NA non-coding upstream 114284 26390387 ~ 26390635 (+)
G2169839 NA non-coding upstream 136558 26368119 ~ 26368361 (+)
G2169807 NA non-coding upstream 156743 26347971 ~ 26348176 (+)
G2169803 NA non-coding upstream 160246 26344429 ~ 26344673 (+)
G2169785 NA non-coding upstream 168903 26335779 ~ 26336016 (+)
G2169992 NA non-coding downstream 11699 26544496 ~ 26544798 (+)
G2170077 LOC106593572 non-coding downstream 12353 26545150 ~ 26545493 (+)
G2170078 NA non-coding downstream 13040 26545837 ~ 26546045 (+)
G2170111 NA non-coding downstream 46599 26579396 ~ 26579675 (+)
G2170112 NA non-coding downstream 47019 26579816 ~ 26580127 (+)
LOC110509859 LOC106563234 other upstream 1972765 24500361 ~ 24532163 (+)
LOC110509837 LOC106563250 other upstream 2713255 23785060 ~ 23793640 (+)
LOC110509345 LOC106563260 other upstream 2979588 23468400 ~ 23534217 (+)
G2170458 LOC106563185 other downstream 789308 27322105 ~ 27324765 (+)
gigyf1b LOC105024601 other downstream 1770408 28277874 ~ 28313151 (+)
LOC110509373 LOC106563396 other downstream 2146051 28678848 ~ 28681351 (+)
G2173098 NA other downstream 3026773 29559570 ~ 29559959 (+)
G2173114 NA other downstream 3052797 29585594 ~ 29587472 (+)

Expression


Co-expression Network